CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 118 | R118G | nonsyn | Aga | Gga | 15524 | 15524 | 1 | 27745-27747 | |
ORF7a | 118 | R118del | del | AGA | --- | 2554 | 2554 | 1 | 27745-27747 | |
ORF7a | 118 | R118I | nonsyn | aGa | aTa | 1085 | 1084 | 0.999078 | 27745-27747 | |
ORF7a | 118 | R118I | nonsyn | aGA | aTT | 1085 | 1 | 0.000921659 | 27745-27747 | |
ORF7a | 118 | R118K | nonsyn | aGa | aAa | 607 | 603 | 0.99341 | 27745-27747 | |
ORF7a | 118 | R118K | nonsyn | aGA | aAG | 607 | 4 | 0.00658979 | 27745-27747 | |
ORF7a | 118 | R118X | nonsyn | Aga | Tga | 482 | 482 | 1 | 27745-27747 | |
ORF7a | 118 | R118S | nonsyn | agA | agC | 365 | 281 | 0.769863 | 27745-27747 | |
ORF7a | 118 | R118S | nonsyn | agA | agT | 365 | 84 | 0.230137 | 27745-27747 | |
ORF7a | 118 | R118T | nonsyn | aGa | aCa | 134 | 133 | 0.992537 | 27745-27747 | |
ORF7a | 118 | R118T | nonsyn | aGA | aCT | 134 | 1 | 0.00746269 | 27745-27747 | |
ORF7a | 118 | R118del1 | del | aGa | a-a | 116 | 97 | 0.836207 | 27745-27747 | |
ORF7a | 118 | R118del1 | del | agA | ag- | 116 | 12 | 0.103448 | 27745-27747 | |
ORF7a | 118 | R118del1 | del | Aga | -ga | 116 | 6 | 0.0517241 | 27745-27747 | |
ORF7a | 118 | R118del1 | del | AgA | -gG | 116 | 1 | 0.00862069 | 27745-27747 | |
ORF7a | 118 | R118R | syn | agA | agG | 101 | 64 | 0.633663 | 27745-27747 | |
ORF7a | 118 | R118R | syn | Aga | Cga | 101 | 35 | 0.346535 | 27745-27747 | |
ORF7a | 118 | R118R | syn | AgA | CgC | 101 | 1 | 0.00990099 | 27745-27747 | |
ORF7a | 118 | R118R | syn | AgA | CgG | 101 | 1 | 0.00990099 | 27745-27747 | |
ORF7a | 118 | R118del2 | del | AGa | --a | 61 | 49 | 0.803279 | 27745-27747 | |
ORF7a | 118 | R118del2 | del | aGA | a-- | 61 | 6 | 0.0983607 | 27745-27747 | |
ORF7a | 118 | R118del2 | del | AGA | --G | 61 | 4 | 0.0655738 | 27745-27747 | |
ORF7a | 118 | R118del2 | del | AGA | --N | 61 | 2 | 0.0327869 | 27745-27747 | |
ORF7a | 118 | R118E | nonsyn | AGa | GAa | 4 | 4 | 1 | 27745-27747 | |
ORF7a | 118 | R118Q | nonsyn | AGA | CAG | 4 | 2 | 0.5 | 27745-27747 | |
ORF7a | 118 | R118Q | nonsyn | AGa | CAa | 4 | 2 | 0.5 | 27745-27747 | |
ORF7a | 118 | R118N | nonsyn | aGA | aAC | 2 | 2 | 1 | 27745-27747 | |
ORF7a | 118 | R118L | nonsyn | AGa | CTa | 2 | 1 | 0.5 | 27745-27747 | |
ORF7a | 118 | R118A | nonsyn | AGa | GCa | 2 | 1 | 0.5 | 27745-27747 | |
ORF7a | 118 | R118A | nonsyn | AGA | GCT | 2 | 1 | 0.5 | 27745-27747 | |
ORF7a | 118 | R118L | nonsyn | AGA | CTC | 2 | 1 | 0.5 | 27745-27747 | |
ORF7a | 118 | R118W | nonsyn | AgA | TgG | 1 | 1 | 1 | 27745-27747 | |
ORF7a | 118 | R118D | nonsyn | AGA | GAC | 1 | 1 | 1 | 27745-27747 | |
ORF7a | 118 | R118M | nonsyn | aGA | aTG | 1 | 1 | 1 | 27745-27747 | |
ORF7a | 118 | R118H | nonsyn | AGA | CAC | 1 | 1 | 1 | 27745-27747 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 118 | R118G | Aga | Gga | 15524 | 15524 | All | 0.002969 |
ORF7a | 118 | R118G | Aga | Gga | 7361 | 7361 | B.1.617.2 | 0.027717 |
ORF7a | 118 | R118G | Aga | Gga | 5184 | 5184 | AY.43 | 0.022968 |
ORF7a | 118 | R118del | AGA | --- | 2554 | 2554 | All | 0.000488 |
ORF7a | 118 | R118G | Aga | Gga | 1214 | 1214 | B.1.1.7 | 0.001087 |
ORF7a | 118 | R118I | aGa | aTa | 1084 | 1085 | All | 0.000207 |
ORF7a | 118 | R118I | aGA | aTT | 1 | 1085 | All | 0 |
ORF7a | 118 | R118del | AGA | --- | 1069 | 1069 | B.1.1.7 | 0.000957 |
ORF7a | 118 | R118K | aGa | aAa | 603 | 607 | All | 0.000115 |
ORF7a | 118 | R118K | aGA | aAG | 4 | 607 | All | 0.000001 |
ORF7a | 118 | R118X | Aga | Tga | 482 | 482 | All | 0.000092 |
ORF7a | 118 | R118X | Aga | Tga | 427 | 427 | AY.4 | 0.000665 |
ORF7a | 118 | R118del | AGA | --- | 390 | 390 | AY.4 | 0.000607 |
ORF7a | 118 | R118S | agA | agC | 281 | 365 | All | 0.000054 |
ORF7a | 118 | R118S | agA | agT | 84 | 365 | All | 0.000016 |
ORF7a | 118 | R118G | Aga | Gga | 315 | 315 | AY.44 | 0.001917 |
ORF7a | 118 | R118G | Aga | Gga | 240 | 240 | AY.39 | 0.005931 |
ORF7a | 118 | R118S | agA | agC | 236 | 236 | AY.103 | 0.001465 |
ORF7a | 118 | R118K | aGa | aAa | 226 | 226 | AY.102 | 0.005992 |
ORF7a | 118 | R118I | aGa | aTa | 209 | 210 | B.1.1.7 | 0.000187 |
ORF7a | 118 | R118I | aGA | aTT | 1 | 210 | B.1.1.7 | 0.000001 |
ORF7a | 118 | R118G | Aga | Gga | 199 | 199 | AY.4 | 0.00031 |
ORF7a | 118 | R118G | Aga | Gga | 183 | 183 | AY.102 | 0.004852 |
ORF7a | 118 | R118K | aGa | aAa | 172 | 173 | B.1.617.2 | 0.000648 |
ORF7a | 118 | R118K | aGA | aAG | 1 | 173 | B.1.617.2 | 0.000004 |
ORF7a | 118 | R118T | aGa | aCa | 133 | 134 | All | 0.000025 |
ORF7a | 118 | R118T | aGA | aCT | 1 | 134 | All | 0 |
ORF7a | 118 | R118I | aGa | aTa | 129 | 129 | B.1.1.50 | 0.087576 |
ORF7a | 118 | R118I | aGa | aTa | 126 | 126 | AY.4 | 0.000196 |
ORF7a | 118 | R118del1 | aGa | a-a | 97 | 116 | All | 0.000019 |
ORF7a | 118 | R118del1 | agA | ag- | 12 | 116 | All | 0.000002 |
ORF7a | 118 | R118del1 | Aga | -ga | 6 | 116 | All | 0.000001 |
ORF7a | 118 | R118del1 | AgA | -gG | 1 | 116 | All | 0 |
ORF7a | 118 | R118R | agA | agG | 64 | 101 | All | 0.000012 |
ORF7a | 118 | R118R | Aga | Cga | 35 | 101 | All | 0.000007 |
ORF7a | 118 | R118R | AgA | CgC | 1 | 101 | All | 0 |
ORF7a | 118 | R118R | AgA | CgG | 1 | 101 | All | 0 |
ORF7a | 118 | R118I | aGa | aTa | 94 | 94 | AY.26 | 0.002661 |
ORF7a | 118 | R118del | AGA | --- | 93 | 93 | AY.33 | 0.00621 |
ORF7a | 118 | R118G | Aga | Gga | 92 | 92 | AY.46 | 0.009575 |
ORF7a | 118 | R118del | AGA | --- | 74 | 74 | AY.25 | 0.000445 |
ORF7a | 118 | R118I | aGa | aTa | 74 | 74 | AY.25 | 0.000445 |
ORF7a | 118 | R118del | AGA | --- | 73 | 73 | AY.3 | 0.000726 |
ORF7a | 118 | R118del | AGA | --- | 64 | 64 | AY.29 | 0.00101 |
ORF7a | 118 | R118T | aGa | aCa | 64 | 64 | B.1.1.7 | 0.000057 |
ORF7a | 118 | R118del2 | AGa | --a | 49 | 61 | All | 0.000009 |
ORF7a | 118 | R118del2 | aGA | a-- | 6 | 61 | All | 0.000001 |
ORF7a | 118 | R118del2 | AGA | --G | 4 | 61 | All | 0.000001 |
ORF7a | 118 | R118del2 | AGA | --N | 2 | 61 | All | 0 |
ORF7a | 118 | R118G | Aga | Gga | 59 | 59 | AY.119 | 0.002083 |
ORF7a | 118 | R118del | AGA | --- | 56 | 56 | AY.46 | 0.005828 |
ORF7a | 118 | R118G | Aga | Gga | 55 | 55 | AY.5.3 | 0.018556 |
ORF7a | 118 | R118del | AGA | --- | 49 | 49 | B.1.617.2 | 0.000185 |
ORF7a | 118 | R118S | agA | agT | 40 | 47 | B.1.1.7 | 0.000036 |
ORF7a | 118 | R118S | agA | agC | 7 | 47 | B.1.1.7 | 0.000006 |
ORF7a | 118 | R118G | Aga | Gga | 46 | 46 | AY.32 | 0.024494 |
ORF7a | 118 | R118G | Aga | Gga | 42 | 42 | AY.33 | 0.002805 |
ORF7a | 118 | R118G | Aga | Gga | 41 | 41 | AY.103 | 0.000255 |
ORF7a | 118 | R118del | AGA | --- | 40 | 40 | AY.103 | 0.000248 |
ORF7a | 118 | R118I | aGa | aTa | 40 | 40 | B.1 | 0.000366 |
ORF7a | 118 | R118del | AGA | --- | 39 | 39 | AY.44 | 0.000237 |
ORF7a | 118 | R118G | Aga | Gga | 39 | 39 | AY.5.4 | 0.010791 |
ORF7a | 118 | R118T | aGa | aCa | 38 | 38 | B.1.177.81 | 0.007194 |
ORF7a | 118 | R118I | aGa | aTa | 38 | 38 | B.1.617.2 | 0.000143 |
ORF7a | 118 | R118I | aGa | aTa | 36 | 36 | AY.102 | 0.000955 |
ORF7a | 118 | R118G | Aga | Gga | 36 | 36 | AY.111 | 0.006593 |
ORF7a | 118 | R118del | AGA | --- | 35 | 35 | AY.42 | 0.001408 |
ORF7a | 118 | R118K | aGa | aAa | 35 | 35 | B.1.1.7 | 0.000031 |
ORF7a | 118 | R118del | AGA | --- | 34 | 34 | P.1 | 0.000536 |
ORF7a | 118 | R118G | Aga | Gga | 33 | 33 | AY.46.6 | 0.002383 |
ORF7a | 118 | R118del | AGA | --- | 33 | 33 | AY.74 | 0.003816 |
ORF7a | 118 | R118del | AGA | --- | 33 | 33 | B.1.2 | 0.000291 |
ORF7a | 118 | R118del1 | aGa | a-a | 32 | 32 | AY.102 | 0.000848 |
ORF7a | 118 | R118I | aGa | aTa | 31 | 31 | AY.43 | 0.000137 |
ORF7a | 118 | R118del | AGA | --- | 30 | 30 | AY.43 | 0.000133 |
ORF7a | 118 | R118K | aGa | aAa | 28 | 28 | AY.105 | 0.018006 |
ORF7a | 118 | R118del1 | aGa | a-a | 24 | 25 | B.1.1.7 | 0.000021 |
ORF7a | 118 | R118del1 | agA | ag- | 1 | 25 | B.1.1.7 | 0.000001 |
ORF7a | 118 | R118del1 | aGa | a-a | 25 | 25 | B.1.160.24 | 0.110619 |
ORF7a | 118 | R118del | AGA | --- | 23 | 23 | AY.26 | 0.000651 |
ORF7a | 118 | R118I | aGa | aTa | 23 | 23 | B.1.588 | 0.020928 |
ORF7a | 118 | R118I | aGa | aTa | 22 | 22 | AY.103 | 0.000137 |
ORF7a | 118 | R118del | AGA | --- | 21 | 21 | AY.53 | 0.006038 |
ORF7a | 118 | R118I | aGa | aTa | 21 | 21 | B.1.1 | 0.000381 |
ORF7a | 118 | R118S | agA | agC | 21 | 21 | B.1.177.65 | 0.013972 |
ORF7a | 118 | R118del2 | AGa | --a | 18 | 20 | B.1.1.7 | 0.000016 |
ORF7a | 118 | R118del2 | aGA | a-- | 2 | 20 | B.1.1.7 | 0.000002 |
ORF7a | 118 | R118G | Aga | Gga | 19 | 19 | AY.106 | 0.006363 |
ORF7a | 118 | R118K | aGa | aAa | 19 | 19 | AY.44 | 0.000116 |
ORF7a | 118 | R118I | aGa | aTa | 19 | 19 | B.1.438.1 | 0.002038 |
ORF7a | 118 | R118I | aGa | aTa | 18 | 18 | B.1.2 | 0.000158 |
ORF7a | 118 | R118R | Aga | Cga | 9 | 18 | B.1.617.2 | 0.000034 |
ORF7a | 118 | R118R | agA | agG | 9 | 18 | B.1.617.2 | 0.000034 |
ORF7a | 118 | R118G | Aga | Gga | 17 | 17 | AY.117 | 0.001437 |
ORF7a | 118 | R118del | AGA | --- | 17 | 17 | B.1.1 | 0.000308 |
ORF7a | 118 | R118G | Aga | Gga | 16 | 16 | AY.41 | 0.004703 |
ORF7a | 118 | R118G | Aga | Gga | 16 | 16 | AY.98 | 0.001264 |
ORF7a | 118 | R118I | aGa | aTa | 15 | 15 | AE.4 | 0.652174 |
ORF7a | 118 | R118G | Aga | Gga | 15 | 15 | AY.77 | 0.016911 |
ORF7a | 118 | R118G | Aga | Gga | 14 | 14 | AY.121 | 0.001894 |
ORF7a | 118 | R118K | aGa | aAa | 13 | 14 | AY.43 | 0.000058 |
ORF7a | 118 | R118K | aGA | aAG | 1 | 14 | AY.43 | 0.000004 |
ORF7a | 118 | R118G | Aga | Gga | 14 | 14 | AY.5 | 0.000289 |
ORF7a | 118 | R118del | AGA | --- | 14 | 14 | B.1.1.37 | 0.0027 |
ORF7a | 118 | R118del | AGA | --- | 14 | 14 | B.1.526 | 0.000329 |
ORF7a | 118 | R118G | Aga | Gga | 13 | 13 | AY.84 | 0.005687 |
ORF7a | 118 | R118I | aGa | aTa | 12 | 12 | AY.110 | 0.001352 |
ORF7a | 118 | R118G | Aga | Gga | 12 | 12 | AY.23 | 0.000837 |
ORF7a | 118 | R118del | AGA | --- | 12 | 12 | AY.39 | 0.000297 |
ORF7a | 118 | R118del2 | AGa | --a | 12 | 12 | AY.42 | 0.000483 |
ORF7a | 118 | R118G | Aga | Gga | 12 | 12 | AY.42 | 0.000483 |
ORF7a | 118 | R118G | Aga | Gga | 12 | 12 | AY.99 | 0.012592 |
ORF7a | 118 | R118del | AGA | --- | 12 | 12 | B.1 | 0.00011 |
ORF7a | 118 | R118del | AGA | --- | 12 | 12 | B.1.177 | 0.000158 |
ORF7a | 118 | R118del | AGA | --- | 11 | 11 | B.1.1.214 | 0.00061 |
ORF7a | 118 | R118del | AGA | --- | 10 | 10 | AY.102 | 0.000265 |
ORF7a | 118 | R118I | aGa | aTa | 10 | 10 | AY.37 | 0.003161 |
ORF7a | 118 | R118G | Aga | Gga | 10 | 10 | AY.45 | 0.001217 |
ORF7a | 118 | R118G | Aga | Gga | 10 | 10 | AY.46.1 | 0.010267 |
ORF7a | 118 | R118del | AGA | --- | 10 | 10 | AY.6 | 0.000411 |
ORF7a | 118 | R118K | aGa | aAa | 10 | 10 | AY.64 | 0.005952 |
ORF7a | 118 | R118G | Aga | Gga | 10 | 10 | AY.92 | 0.002873 |
ORF7a | 118 | R118X | Aga | Tga | 10 | 10 | B.1.177 | 0.000132 |
ORF7a | 118 | R118T | aGa | aCa | 10 | 10 | B.1.2 | 0.000088 |
ORF7a | 118 | R118del | AGA | --- | 10 | 10 | B.1.234 | 0.001319 |
ORF7a | 118 | R118del | AGA | --- | 9 | 9 | AY.113 | 0.001282 |
ORF7a | 118 | R118del | AGA | --- | 9 | 9 | AY.121 | 0.001218 |
ORF7a | 118 | R118R | agA | agG | 8 | 9 | AY.4 | 0.000012 |
ORF7a | 118 | R118R | Aga | Cga | 1 | 9 | AY.4 | 0.000002 |
ORF7a | 118 | R118I | aGa | aTa | 9 | 9 | AY.44 | 0.000055 |
ORF7a | 118 | R118K | aGa | aAa | 9 | 9 | AY.46 | 0.000937 |
ORF7a | 118 | R118G | Aga | Gga | 9 | 9 | AY.59 | 0.004767 |
ORF7a | 118 | R118del | AGA | --- | 9 | 9 | B.1.1.519 | 0.000357 |
ORF7a | 118 | R118X | Aga | Tga | 9 | 9 | B.1.1.7 | 0.000008 |
ORF7a | 118 | R118R | Aga | Cga | 9 | 9 | B.1.177.16 | 0.00598 |
ORF7a | 118 | R118I | aGa | aTa | 9 | 9 | B.1.221 | 0.000639 |
ORF7a | 118 | R118X | Aga | Tga | 9 | 9 | B.1.617.2 | 0.000034 |
ORF7a | 118 | R118del1 | aGa | a-a | 8 | 9 | B.1.617.2 | 0.00003 |
ORF7a | 118 | R118del1 | agA | ag- | 1 | 9 | B.1.617.2 | 0.000004 |
ORF7a | 118 | R118del | AGA | --- | 8 | 8 | AY.91 | 0.005844 |
ORF7a | 118 | R118G | Aga | Gga | 7 | 7 | AY.116 | 0.002007 |
ORF7a | 118 | R118del | AGA | --- | 7 | 7 | AY.120 | 0.00026 |
ORF7a | 118 | R118K | aGa | aAa | 7 | 7 | AY.4 | 0.000011 |
ORF7a | 118 | R118I | aGa | aTa | 7 | 7 | AY.99 | 0.007345 |
ORF7a | 118 | R118del | AGA | --- | 7 | 7 | B.1.258.17 | 0.000728 |
ORF7a | 118 | R118del | AGA | --- | 7 | 7 | B.1.628 | 0.002467 |
ORF7a | 118 | R118R | agA | agG | 3 | 6 | 0.166667 | |
ORF7a | 118 | R118R | Aga | Cga | 1 | 6 | 0.055556 | |
ORF7a | 118 | R118R | AgA | CgC | 1 | 6 | 0.055556 | |
ORF7a | 118 | R118R | AgA | CgG | 1 | 6 | 0.055556 | |
ORF7a | 118 | R118G | Aga | Gga | 6 | 6 | AY.114 | 0.001387 |
ORF7a | 118 | R118del | AGA | --- | 6 | 6 | AY.119 | 0.000212 |
ORF7a | 118 | R118S | agA | agT | 6 | 6 | AY.20 | 0.000233 |
ORF7a | 118 | R118K | aGa | aAa | 6 | 6 | AY.25 | 0.000036 |
ORF7a | 118 | R118S | agA | agT | 3 | 6 | AY.4 | 0.000005 |
ORF7a | 118 | R118S | agA | agC | 3 | 6 | AY.4 | 0.000005 |
ORF7a | 118 | R118S | agA | agT | 6 | 6 | AY.43 | 0.000027 |
ORF7a | 118 | R118X | Aga | Tga | 6 | 6 | AY.43 | 0.000027 |
ORF7a | 118 | R118G | Aga | Gga | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 118 | R118I | aGa | aTa | 6 | 6 | AY.9.1 | 0.000502 |
ORF7a | 118 | R118K | aGa | aAa | 6 | 6 | B.1 | 0.000055 |
ORF7a | 118 | R118K | aGa | aAa | 6 | 6 | B.1.160.24 | 0.026549 |
ORF7a | 118 | R118K | aGa | aAa | 6 | 6 | B.1.351 | 0.000178 |
ORF7a | 118 | R118del | AGA | --- | 6 | 6 | B.1.351 | 0.000178 |
ORF7a | 118 | R118del | AGA | --- | 6 | 6 | B.1.429 | 0.000141 |
ORF7a | 118 | R118T | aGa | aCa | 6 | 6 | B.1.617.2 | 0.000023 |
ORF7a | 118 | R118del | AGA | --- | 6 | 6 | D.2 | 0.00045 |
ORF7a | 118 | R118K | aGa | aAa | 6 | 6 | P.1 | 0.000095 |
ORF7a | 118 | R118G | Aga | Gga | 5 | 5 | AY.100 | 0.00023 |
ORF7a | 118 | R118G | Aga | Gga | 5 | 5 | AY.118 | 0.000313 |
ORF7a | 118 | R118R | agA | agG | 4 | 5 | AY.3 | 0.00004 |
ORF7a | 118 | R118R | Aga | Cga | 1 | 5 | AY.3 | 0.00001 |
ORF7a | 118 | R118G | Aga | Gga | 5 | 5 | AY.34.1 | 0.00255 |
ORF7a | 118 | R118del | AGA | --- | 5 | 5 | AY.4.2 | 0.000108 |
ORF7a | 118 | R118I | aGa | aTa | 5 | 5 | AY.42 | 0.000201 |
ORF7a | 118 | R118G | Aga | Gga | 5 | 5 | AY.67 | 0.002321 |
ORF7a | 118 | R118G | Aga | Gga | 5 | 5 | AY.89 | 0.02451 |
ORF7a | 118 | R118G | Aga | Gga | 5 | 5 | AY.95 | 0.003805 |
ORF7a | 118 | R118del | AGA | --- | 5 | 5 | B.1.1.318 | 0.001509 |
ORF7a | 118 | R118G | Aga | Gga | 5 | 5 | B.1.160 | 0.000156 |
ORF7a | 118 | R118del2 | AGa | --a | 5 | 5 | B.1.234 | 0.00066 |
ORF7a | 118 | R118I | aGa | aTa | 5 | 5 | B.1.36 | 0.00073 |
ORF7a | 118 | R118I | aGa | aTa | 5 | 5 | B.1.429 | 0.000118 |
ORF7a | 118 | R118del | AGA | --- | 5 | 5 | B.1.621 | 0.000443 |
ORF7a | 118 | R118I | aGa | aTa | 5 | 5 | P.1 | 0.000079 |
ORF7a | 118 | R118del | AGA | --- | 5 | 5 | P.2 | 0.000933 |
ORF7a | 118 | R118R | agA | agG | 4 | 4 | A.2 | 0.002647 |
ORF7a | 118 | R118E | AGa | GAa | 4 | 4 | All | 0.000001 |
ORF7a | 118 | R118Q | AGa | CAa | 2 | 4 | All | 0 |
ORF7a | 118 | R118Q | AGA | CAG | 2 | 4 | All | 0 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.10 | 0.00212 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 118 | R118del | AGA | --- | 4 | 4 | AY.114 | 0.000924 |
ORF7a | 118 | R118R | agA | agG | 4 | 4 | AY.119 | 0.000141 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | AY.120 | 0.000149 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | AY.121 | 0.000541 |
ORF7a | 118 | R118del | AGA | --- | 4 | 4 | AY.20 | 0.000155 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.25 | 0.000024 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.3 | 0.00004 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | AY.3 | 0.00004 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.4.3 | 0.003367 |
ORF7a | 118 | R118del | AGA | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF7a | 118 | R118K | aGa | aAa | 4 | 4 | AY.42 | 0.000161 |
ORF7a | 118 | R118del2 | AGA | --G | 3 | 4 | AY.44 | 0.000018 |
ORF7a | 118 | R118R | Aga | Cga | 3 | 4 | AY.44 | 0.000018 |
ORF7a | 118 | R118del2 | AGA | --N | 1 | 4 | AY.44 | 0.000006 |
ORF7a | 118 | R118R | agA | agG | 1 | 4 | AY.44 | 0.000006 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.46.2 | 0.002541 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.53 | 0.00115 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.58 | 0.00363 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.64 | 0.002381 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.68 | 0.001095 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | AY.75 | 0.000224 |
ORF7a | 118 | R118del | AGA | --- | 4 | 4 | AY.79 | 0.004843 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.86 | 0.00332 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | AY.9 | 0.00027 |
ORF7a | 118 | R118K | aGa | aAa | 4 | 4 | AY.98 | 0.000316 |
ORF7a | 118 | R118G | Aga | Gga | 4 | 4 | B.1 | 0.000037 |
ORF7a | 118 | R118S | agA | agT | 4 | 4 | B.1 | 0.000037 |
ORF7a | 118 | R118R | agA | agG | 2 | 4 | B.1.1 | 0.000036 |
ORF7a | 118 | R118R | Aga | Cga | 2 | 4 | B.1.1 | 0.000036 |
ORF7a | 118 | R118del | AGA | --- | 4 | 4 | B.1.1.284 | 0.00043 |
ORF7a | 118 | R118R | agA | agG | 3 | 4 | B.1.1.7 | 0.000003 |
ORF7a | 118 | R118R | Aga | Cga | 1 | 4 | B.1.1.7 | 0.000001 |
ORF7a | 118 | R118K | aGa | aAa | 4 | 4 | B.1.177 | 0.000053 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.177 | 0.000053 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.177.66 | 0.166667 |
ORF7a | 118 | R118del | AGA | --- | 4 | 4 | B.1.177.7 | 0.000659 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.526 | 0.000094 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.582 | 0.001963 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF7a | 118 | R118S | agA | agT | 4 | 4 | B.1.617.2 | 0.000015 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | C.37 | 0.000464 |
ORF7a | 118 | R118del | AGA | --- | 4 | 4 | N.7 | 0.117647 |
ORF7a | 118 | R118del | AGA | --- | 4 | 4 | P.1.14 | 0.000191 |
ORF7a | 118 | R118del | AGA | --- | 4 | 4 | R.1 | 0.00036 |
ORF7a | 118 | R118R | agA | agG | 3 | 3 | AY.102 | 0.00008 |
ORF7a | 118 | R118K | aGa | aAa | 3 | 3 | AY.120 | 0.000112 |
ORF7a | 118 | R118G | Aga | Gga | 3 | 3 | AY.14 | 0.000264 |
ORF7a | 118 | R118G | Aga | Gga | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 118 | R118del1 | agA | ag- | 2 | 3 | AY.44 | 0.000012 |
ORF7a | 118 | R118del1 | aGa | a-a | 1 | 3 | AY.44 | 0.000006 |
ORF7a | 118 | R118R | agA | agG | 3 | 3 | AY.5 | 0.000062 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | AY.7.2 | 0.001678 |
ORF7a | 118 | R118G | Aga | Gga | 3 | 3 | AY.72 | 0.004082 |
ORF7a | 118 | R118T | aGa | aCa | 3 | 3 | B.1 | 0.000027 |
ORF7a | 118 | R118G | Aga | Gga | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 118 | R118G | Aga | Gga | 3 | 3 | B.1.1.171 | 0.011029 |
ORF7a | 118 | R118del1 | Aga | -ga | 3 | 3 | B.1.1.214 | 0.000166 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | B.1.1.58 | 0.016129 |
ORF7a | 118 | R118I | aGa | aTa | 3 | 3 | B.1.177.3 | 0.022901 |
ORF7a | 118 | R118K | aGa | aAa | 3 | 3 | B.1.2 | 0.000026 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | B.1.258 | 0.0002 |
ORF7a | 118 | R118G | Aga | Gga | 3 | 3 | B.1.351 | 0.000089 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | B.1.351.2 | 0.000908 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | B.1.36 | 0.000438 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | B.1.389 | 0.003006 |
ORF7a | 118 | R118I | aGa | aTa | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 118 | R118S | agA | agT | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | B.1.575 | 0.00091 |
ORF7a | 118 | R118I | aGa | aTa | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | C.37 | 0.000348 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF7a | 118 | R118I | aGa | aTa | 3 | 3 | Q.3 | 0.000435 |
ORF7a | 118 | R118del | AGA | --- | 3 | 3 | Q.8 | 0.000495 |
ORF7a | 118 | R118S | agA | agC | 3 | 3 | R.1 | 0.00027 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 2 | 0.055556 | |
ORF7a | 118 | R118K | aGA | aAG | 1 | 2 | 0.055556 | |
ORF7a | 118 | R118Q | AGa | CAa | 1 | 2 | 0.055556 | |
ORF7a | 118 | R118Q | AGA | CAG | 1 | 2 | 0.055556 | |
ORF7a | 118 | R118N | aGA | aAC | 2 | 2 | All | 0 |
ORF7a | 118 | R118L | AGA | CTC | 1 | 2 | All | 0 |
ORF7a | 118 | R118A | AGa | GCa | 1 | 2 | All | 0 |
ORF7a | 118 | R118A | AGA | GCT | 1 | 2 | All | 0 |
ORF7a | 118 | R118L | AGa | CTa | 1 | 2 | All | 0 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 118 | R118X | Aga | Tga | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 118 | R118S | agA | agT | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.105 | 0.001286 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.110 | 0.000225 |
ORF7a | 118 | R118S | agA | agT | 2 | 2 | AY.111 | 0.000366 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | AY.116 | 0.000574 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 118 | R118K | aGa | aAa | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.19 | 0.002281 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | AY.23 | 0.000139 |
ORF7a | 118 | R118S | agA | agT | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 118 | R118del1 | aGa | a-a | 2 | 2 | AY.29 | 0.000032 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 118 | R118R | Aga | Cga | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 118 | R118K | aGa | aAa | 2 | 2 | AY.39 | 0.000049 |
ORF7a | 118 | R118T | aGa | aCa | 2 | 2 | AY.39.1 | 0.000079 |
ORF7a | 118 | R118del2 | AGa | --a | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 118 | R118X | Aga | Tga | 2 | 2 | AY.4.4 | 0.000818 |
ORF7a | 118 | R118S | agA | agT | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 118 | R118del1 | aGa | a-a | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 118 | R118S | agA | agC | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | AY.46.5 | 0.000397 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.52 | 0.001629 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.56 | 0.00321 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.61 | 0.00021 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.61 | 0.00021 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.87 | 0.001665 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 118 | R118S | agA | agT | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 118 | R118R | agA | agG | 2 | 2 | B.1 | 0.000018 |
ORF7a | 118 | R118del2 | aGA | a-- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7a | 118 | R118S | agA | agC | 2 | 2 | B.1.1.153 | 0.002191 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.1.155 | 0.142857 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 118 | R118A | AGA | GCT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 118 | R118A | AGa | GCa | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 118 | R118R | Aga | Cga | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 118 | R118del1 | aGa | a-a | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 118 | R118S | agA | agC | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.177.23 | 0.006472 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.177.57 | 0.000562 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 118 | R118del1 | agA | ag- | 2 | 2 | B.1.2 | 0.000018 |
ORF7a | 118 | R118R | agA | agG | 2 | 2 | B.1.2 | 0.000018 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.232 | 0.001075 |
ORF7a | 118 | R118K | aGa | aAa | 2 | 2 | B.1.234 | 0.000264 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.351 | 0.000059 |
ORF7a | 118 | R118R | agA | agG | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 118 | R118X | Aga | Tga | 2 | 2 | B.1.404 | 0.002604 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF7a | 118 | R118R | agA | agG | 2 | 2 | B.1.438.1 | 0.000215 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.456 | 0.006536 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.565 | 0.001621 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.612 | 0.005305 |
ORF7a | 118 | R118del | AGA | --- | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 118 | R118del1 | agA | ag- | 2 | 2 | B.1.627 | 0.00404 |
ORF7a | 118 | R118S | agA | agT | 2 | 2 | P.1 | 0.000032 |
ORF7a | 118 | R118G | Aga | Gga | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 118 | R118R | agA | agG | 2 | 2 | P.3 | 0.00319 |
ORF7a | 118 | R118N | aGA | aAC | 1 | 1 | 0.055556 | |
ORF7a | 118 | R118H | AGA | CAC | 1 | 1 | 0.055556 | |
ORF7a | 118 | R118S | agA | agC | 1 | 1 | 0.055556 | |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | A | 0.000387 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | A.2.4 | 0.003367 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | A.23 | 0.010526 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AE.8 | 0.000489 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AH.3 | 0.003802 |
ORF7a | 118 | R118W | AgA | TgG | 1 | 1 | All | 0 |
ORF7a | 118 | R118H | AGA | CAC | 1 | 1 | All | 0 |
ORF7a | 118 | R118M | aGA | aTG | 1 | 1 | All | 0 |
ORF7a | 118 | R118D | AGA | GAC | 1 | 1 | All | 0 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AU.1 | 0.001266 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.1 | 0.000396 |
ORF7a | 118 | R118del1 | agA | ag- | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 118 | R118Q | AGA | CAG | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 118 | R118del1 | agA | ag- | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 118 | R118del1 | aGa | a-a | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 118 | R118E | AGa | GAa | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF7a | 118 | R118del1 | Aga | -ga | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.19 | 0.00114 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.21 | 0.001898 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 118 | R118del1 | Aga | -ga | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 118 | R118del1 | AgA | -gG | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 118 | R118S | agA | agT | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 118 | R118R | Aga | Cga | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | AY.41 | 0.000294 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 118 | R118S | agA | agC | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 118 | R118S | agA | agC | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 118 | R118T | aGA | aCT | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.77 | 0.001127 |
ORF7a | 118 | R118del2 | AGA | --G | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.87 | 0.000833 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | AY.97 | 0.001701 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B | 0.000128 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | B.1 | 0.000009 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | B.1.1.225 | 0.007194 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | B.1.1.234 | 0.012048 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.1.280 | 0.003086 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.1.291 | 0.000742 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.302 | 0.002075 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.308 | 0.011765 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.1.331 | 0.011628 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.1.337 | 0.003597 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.1.411 | 0.014706 |
ORF7a | 118 | R118L | AGA | CTC | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.1.437 | 0.010417 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7a | 118 | R118M | aGA | aTG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 118 | R118L | AGa | CTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 118 | R118E | AGa | GAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 118 | R118S | agA | agT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.162 | 0.005025 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 118 | R118S | agA | agC | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.177.46 | 0.000918 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.177.80 | 0.001912 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.189 | 0.004292 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 118 | R118E | AGa | GAa | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 118 | R118S | agA | agT | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 118 | R118del1 | Aga | -ga | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.223 | 0.002778 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.23 | 0.006061 |
ORF7a | 118 | R118R | Aga | Cga | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 118 | R118Q | AGa | CAa | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.235 | 0.002519 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.346 | 0.001311 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 118 | R118del1 | agA | ag- | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | B.1.396 | 0.000706 |
ORF7a | 118 | R118D | AGA | GAC | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 118 | R118del2 | AGA | --N | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 118 | R118S | agA | agT | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 118 | R118R | Aga | Cga | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.432 | 0.011236 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.438 | 0.006536 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.503 | 0.002488 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.527 | 0.003704 |
ORF7a | 118 | R118R | Aga | Cga | 1 | 1 | B.1.558 | 0.004566 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.567 | 0.003333 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.575.1 | 0.002439 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.1.606 | 0.006024 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 118 | R118W | AgA | TgG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 118 | R118E | AGa | GAa | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 118 | R118del2 | aGA | a-- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 118 | R118N | aGA | aAC | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | B.12 | 0.00641 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | B.40 | 0.000364 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | B.6.6 | 0.000889 |
ORF7a | 118 | R118S | agA | agT | 1 | 1 | C.16 | 0.00106 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | C.37 | 0.000116 |
ORF7a | 118 | R118S | agA | agC | 1 | 1 | C.37 | 0.000116 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | C.37 | 0.000116 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | C.37.1 | 0.002618 |
ORF7a | 118 | R118K | aGA | aAG | 1 | 1 | C.39 | 0.018868 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | D.2 | 0.000075 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | D.2 | 0.000075 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | N.5 | 0.001767 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | P.1 | 0.000016 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | P.1 | 0.000016 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | P.1 | 0.000016 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | P.1 | 0.000016 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 118 | R118K | aGa | aAa | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 118 | R118S | agA | agT | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF7a | 118 | R118del2 | aGA | a-- | 1 | 1 | P.2 | 0.000187 |
ORF7a | 118 | R118G | Aga | Gga | 1 | 1 | P.2 | 0.000187 |
ORF7a | 118 | R118R | agA | agG | 1 | 1 | P.4 | 0.003802 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | P.7 | 0.004367 |
ORF7a | 118 | R118del | AGA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 118 | R118T | aGa | aCa | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 118 | R118X | Aga | Tga | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 118 | R118del2 | AGa | --a | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 118 | R118del1 | agA | ag- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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