CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 116 & Codon = ctT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	116	L116L		syn	ctC	ctT	8400	8130	0.967857	27739-27741

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	116	L116L	ctC	ctT	8130	8400	All	0.001555
ORF7a	116	L116L	ctC	ctT	2566	2598	B.1.1.7	0.002297
ORF7a	116	L116L	ctC	ctT	392	539	AY.4	0.00061
ORF7a	116	L116L	ctC	ctT	473	478	B.1.2	0.004165
ORF7a	116	L116L	ctC	ctT	357	367	B.1.617.2	0.001344
ORF7a	116	L116L	ctC	ctT	294	300	AY.44	0.00179
ORF7a	116	L116L	ctC	ctT	279	290	B.1	0.002556
ORF7a	116	L116L	ctC	ctT	238	238	AY.103	0.001478
ORF7a	116	L116L	ctC	ctT	223	224	B.1.177	0.002936
ORF7a	116	L116L	ctC	ctT	172	173	AY.3	0.001711
ORF7a	116	L116L	ctC	ctT	157	158	AY.43	0.000696
ORF7a	116	L116L	ctC	ctT	143	145	P.1	0.002253
ORF7a	116	L116L	ctC	ctT	129	135	AY.25	0.000776
ORF7a	116	L116L	ctC	ctT	127	130	B.1.596	0.011067
ORF7a	116	L116L	ctC	ctT	127	127	B.1.177.56	0.08478
ORF7a	116	L116L	ctC	ctT	121	121	B.1.1.50	0.082145
ORF7a	116	L116L	ctC	ctT	106	106	B.1.221	0.007529
ORF7a	116	L116L	ctC	ctT	89	89	B.1.526	0.002092
ORF7a	116	L116L	ctC	ctT	85	86	AY.20	0.003304
ORF7a	116	L116L	ctC	ctT	78	78	AY.47	0.002426
ORF7a	116	L116L	ctC	ctT	73	75	B.1.1	0.001324
ORF7a	116	L116L	ctC	ctT	63	63	B.1.177.81	0.011927
ORF7a	116	L116L	ctC	ctT	56	59	AY.26	0.001585
ORF7a	116	L116L	ctC	ctT	58	58	B.1.1.231	0.179567
ORF7a	116	L116L	ctC	ctT	55	55	AY.113	0.007831
ORF7a	116	L116L	ctC	ctT	53	55	B.1.243	0.003688
ORF7a	116	L116L	ctC	ctT	47	47	AY.3.1	0.004007
ORF7a	116	L116L	ctC	ctT	47	47	B.1.1.519	0.001866
ORF7a	116	L116L	ctC	ctT	42	42	AY.4.2	0.000911
ORF7a	116	L116L	ctC	ctT	42	42	B.1.429	0.000988
ORF7a	116	L116L	ctC	ctT	41	41	B.1.637	0.002996
ORF7a	116	L116L	ctC	ctT	37	37	AY.5	0.000764
ORF7a	116	L116L	ctC	ctT	35	35	B.1.1.51	0.060137
ORF7a	116	L116L	ctC	ctT	35	35	B.1.427	0.001767
ORF7a	116	L116L	ctC	ctT	32	32	AY.39.1	0.001268
ORF7a	116	L116L	ctC	ctT	32	32	B.1.36.16	0.045584
ORF7a	116	L116L	ctC	ctT	31	31	B.1.1.434	0.010805
ORF7a	116	L116L	ctC	ctT	27	29	AY.117	0.002282
ORF7a	116	L116L	ctC	ctT	29	29	N.10	0.852941
ORF7a	116	L116L	ctC	ctT	27	28	AY.102	0.000716
ORF7a	116	L116L	ctC	ctT	27	27	AY.29	0.000426
ORF7a	116	L116L	ctC	ctT	26	26	AY.9.2	0.000955
ORF7a	116	L116L	ctC	ctT	25	25	B.1.551	0.032258
ORF7a	116	L116L	ctC	ctT	24	24	B.1.1.222	0.004896
ORF7a	116	L116L	ctC	ctT	23	23	P.1.14	0.001099
ORF7a	116	L116L	ctC	ctT	21	21	C.37	0.002437
ORF7a	116	L116L	ctC	ctT	20	20	B.1.234	0.002639
ORF7a	116	L116L	ctC	ctT	20	20	P.1.15	0.004647
ORF7a	116	L116L	ctC	ctT	19	19	B.1.177.21	0.001453
ORF7a	116	L116L	ctC	ctT	19	19	P.2	0.003546
ORF7a	116	L116L	ctC	ctT	18	18	B.1.311	0.004942
ORF7a	116	L116L	ctC	ctT	17	17	AY.33	0.001135
ORF7a	116	L116L	ctC	ctT	16	16	AY.23	0.001116
ORF7a	116	L116L	ctC	ctT	14	16	AY.39	0.000346
ORF7a	116	L116L	ctC	ctT	16	16	B.1.36.29	0.008277
ORF7a	116	L116L	ctC	ctT	14	15	AY.100	0.000644
ORF7a	116	L116L	ctC	ctT	15	15	AY.119	0.00053
ORF7a	116	L116L	ctC	ctT	14	15	B.1.351	0.000416
ORF7a	116	L116L	ctC	ctT	14	14	B.1.1.397	0.031532
ORF7a	116	L116L	ctC	ctT	14	14	B.1.550	0.191781
ORF7a	116	L116L	ctC	ctT	11	14	B.1.561	0.004367
ORF7a	116	L116L	ctC	ctT	14	14	B.1.617.1	0.001806
ORF7a	116	L116L	ctC	ctT	11	13	AY.42	0.000443
ORF7a	116	L116L	ctC	ctT	13	13	AY.45	0.001582
ORF7a	116	L116L	ctC	ctT	13	13	AY.61	0.001362
ORF7a	116	L116L	ctC	ctT	13	13	AY.98	0.001027
ORF7a	116	L116L	ctC	ctT	13	13	B.1.111	0.015276
ORF7a	116	L116L	ctC	ctT	13	13	B.1.160.27	0.19697
ORF7a	116	L116L	ctC	ctT	13	13	Q.8	0.002144
ORF7a	116	L116L	ctC	ctT	11	12	AY.120	0.000409
ORF7a	116	L116L	ctC	ctT	12	12	AY.35	0.002797
ORF7a	116	L116L	ctC	ctT	12	12	AY.36	0.001779
ORF7a	116	L116L	ctC	ctT	12	12	B.1.36	0.001751
ORF7a	116	L116L	ctC	ctT	12	12	B.1.516	0.023483
ORF7a	116	L116L	ctC	ctT	11	11	C.34	0.407407
ORF7a	116	L116L	ctC	ctT	10	10	B.1.525	0.001132
ORF7a	116	L116L	ctC	ctT	10	10	P.1.4	0.009766
ORF7a	116	L116L	ctC	ctT	9	9	AY.2	0.003205
ORF7a	116	L116L	ctC	ctT	9	9	AY.74	0.001041
ORF7a	116	L116L	ctC	ctT	9	9	B.1.1.28	0.002801
ORF7a	116	L116L	ctC	ctT	8	9	B.1.258	0.000532
ORF7a	116	L116L	ctC	ctT	8	8	AY.46.6	0.000578
ORF7a	116	L116L	ctC	ctT	8	8	AY.75.1	0.001442
ORF7a	116	L116L	ctC	ctT	8	8	B.1.1.33	0.003367
ORF7a	116	L116L	ctC	ctT	8	8	B.1.177.35	0.005529
ORF7a	116	L116L	ctC	ctT	8	8	B.1.438.1	0.000858
ORF7a	116	L116L	ctC	ctT	8	8	B.1.621	0.000708
ORF7a	116	L116L	ctC	ctT	7	8	D.2	0.000525
ORF7a	116	L116L	ctC	ctT	7	7	AY.95	0.005327
ORF7a	116	L116L	ctC	ctT	7	7	B.1.1.305	0.027027
ORF7a	116	L116L	ctC	ctT	7	7	B.1.1.306	0.003069
ORF7a	116	L116L	ctC	ctT	7	7	B.1.1.37	0.00135
ORF7a	116	L116L	ctC	ctT	7	7	B.1.466.2	0.002739
ORF7a	116	L116L	ctC	ctT	7	7	B.1.499	0.007353
ORF7a	116	L116L	ctC	ctT	6	6	AY.29.1	0.001323
ORF7a	116	L116L	ctC	ctT	6	6	AY.46	0.000624
ORF7a	116	L116L	ctC	ctT	5	6	AY.75	0.00028
ORF7a	116	L116L	ctC	ctT	6	6	AY.9	0.000406
ORF7a	116	L116L	ctC	ctT	6	6	B.1.1.284	0.000644
ORF7a	116	L116L	ctC	ctT	6	6	B.1.160	0.000187
ORF7a	116	L116L	ctC	ctT	6	6	B.1.160.17	0.010204
ORF7a	116	L116L	ctC	ctT	6	6	B.1.177.7	0.000989
ORF7a	116	L116L	ctC	ctT	6	6	B.1.258.22	0.016
ORF7a	116	L116L	ctC	ctT	6	6	C.26	0.044118
ORF7a	116	L116L	ctC	ctT	5	5	AY.110	0.000563
ORF7a	116	L116L	ctC	ctT	2	5	AY.6	0.000082
ORF7a	116	L116L	ctC	ctT	5	5	AY.99.2	0.000461
ORF7a	116	L116L	ctC	ctT	5	5	B.1.1.157	0.004566
ORF7a	116	L116L	ctC	ctT	5	5	B.1.1.176	0.002197
ORF7a	116	L116L	ctC	ctT	5	5	B.1.1.349	0.051546
ORF7a	116	L116L	ctC	ctT	2	5	B.1.258.17	0.000208
ORF7a	116	L116L	ctC	ctT	5	5	B.1.575	0.001517
ORF7a	116	L116L	ctC	ctT	4	4	A.1	0.001127
ORF7a	116	L116L	ctC	ctT	4	4	AY.10	0.00212
ORF7a	116	L116L	ctC	ctT	4	4	AY.32	0.00213
ORF7a	116	L116L	ctC	ctT	4	4	B.1.1.318	0.001207
ORF7a	116	L116L	ctC	ctT	4	4	B.1.232	0.002149
ORF7a	116	L116L	ctC	ctT	4	4	B.1.351.2	0.00121
ORF7a	116	L116L	ctC	ctT	4	4	B.1.369	0.001141
ORF7a	116	L116L	ctC	ctT	4	4	P.1.17	0.000647
ORF7a	116	L116L	ctC	ctT	4	4	Q.4	0.001819
ORF7a	116	L116L	ctC	ctT	3	3	A.2.5	0.001497
ORF7a	116	L116L	ctC	ctT	3	3	A.23.1	0.002113
ORF7a	116	L116L	ctC	ctT	3	3	AY.107	0.001398
ORF7a	116	L116L	ctC	ctT	3	3	AY.108	0.003308
ORF7a	116	L116L	ctC	ctT	3	3	AY.118	0.000188
ORF7a	116	L116L	ctC	ctT	3	3	AY.27	0.000194
ORF7a	116	L116L	ctC	ctT	3	3	AY.38	0.001498
ORF7a	116	L116L	ctC	ctT	3	3	AY.59	0.001589
ORF7a	116	L116L	ctC	ctT	3	3	AY.85	0.001282
ORF7a	116	L116L	ctC	ctT	3	3	B	0.000383
ORF7a	116	L116L	ctC	ctT	3	3	B.1.1.216	0.002671
ORF7a	116	L116L	ctC	ctT	3	3	B.1.1.317	0.001235
ORF7a	116	L116L	ctC	ctT	3	3	B.1.1.329	0.011538
ORF7a	116	L116L	ctC	ctT	3	3	B.1.1.344	0.032258
ORF7a	116	L116L	ctC	ctT	3	3	B.1.1.348	0.002389
ORF7a	116	L116L	ctC	ctT	3	3	B.1.1.432	0.003797
ORF7a	116	L116L	ctC	ctT	3	3	B.1.177.17	0.002463
ORF7a	116	L116L	ctC	ctT	3	3	B.1.177.6	0.00293
ORF7a	116	L116L	ctC	ctT	3	3	B.1.177.73	0.001699
ORF7a	116	L116L	ctC	ctT	3	3	B.1.240	0.000647
ORF7a	116	L116L	ctC	ctT	3	3	B.1.258.14	0.002941
ORF7a	116	L116L	ctC	ctT	3	3	B.1.326	0.022727
ORF7a	116	L116L	ctC	ctT	3	3	B.1.36.1	0.003421
ORF7a	116	L116L	ctC	ctT	3	3	B.1.36.18	0.001261
ORF7a	116	L116L	ctC	ctT	3	3	B.1.375	0.002459
ORF7a	116	L116L	ctC	ctT	3	3	B.1.399	0.005803
ORF7a	116	L116L	ctC	ctT	3	3	B.1.420	0.03125
ORF7a	116	L116L	ctC	ctT	3	3	B.1.619.1	0.001924
ORF7a	116	L116L	ctC	ctT	3	3	P.1.12	0.001452
ORF7a	116	L116L	ctC	ctT	2	2	AA.5	0.032258
ORF7a	116	L116L	ctC	ctT	2	2	AY.1	0.000791
ORF7a	116	L116L	ctC	ctT	2	2	AY.4.5	0.000215
ORF7a	116	L116L	ctC	ctT	2	2	AY.46.4	0.000329
ORF7a	116	L116L	ctC	ctT	2	2	AY.5.4	0.000553
ORF7a	116	L116L	ctC	ctT	2	2	AY.67	0.000929
ORF7a	116	L116L	ctC	ctT	2	2	AY.69	0.000373
ORF7a	116	L116L	ctC	ctT	2	2	AY.86	0.00166
ORF7a	116	L116L	ctC	ctT	2	2	AY.98.1	0.000097
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.1	0.000653
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.189	0.003026
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.214	0.000111
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.232	0.00363
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.25	0.001137
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.322	0.017544
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.41	0.012658
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.416	0.00181
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.448	0.004065
ORF7a	116	L116L	ctC	ctT	2	2	B.1.1.8	0.007168
ORF7a	116	L116L	ctC	ctT	2	2	B.1.127	0.004396
ORF7a	116	L116L	ctC	ctT	2	2	B.1.177.12	0.000303
ORF7a	116	L116L	ctC	ctT	2	2	B.1.177.24	0.002591
ORF7a	116	L116L	ctC	ctT	2	2	B.1.177.57	0.000562
ORF7a	116	L116L	ctC	ctT	2	2	B.1.3	0.005236
ORF7a	116	L116L	ctC	ctT	2	2	B.1.320	0.002491
ORF7a	116	L116L	ctC	ctT	2	2	B.1.324	0.00321
ORF7a	116	L116L	ctC	ctT	2	2	B.1.351.3	0.001753
ORF7a	116	L116L	ctC	ctT	2	2	B.1.422	0.001625
ORF7a	116	L116L	ctC	ctT	2	2	B.1.466.1	0.014388
ORF7a	116	L116L	ctC	ctT	2	2	B.1.469	0.00722
ORF7a	116	L116L	ctC	ctT	2	2	B.1.517	0.000854
ORF7a	116	L116L	ctC	ctT	2	2	B.1.564	0.000852
ORF7a	116	L116L	ctC	ctT	2	2	B.1.595	0.000522
ORF7a	116	L116L	ctC	ctT	2	2	B.1.621.1	0.001012
ORF7a	116	L116L	ctC	ctT	1	2	B.6.6	0.000889
ORF7a	116	L116L	ctC	ctT	2	2	Q.1	0.000253
ORF7a	116	L116L	ctC	ctT	2	2	R.1	0.00018
ORF7a	116	L116L	ctC	ctT	1	1		0.055556
ORF7a	116	L116L	ctC	ctT	1	1	A.2.4	0.003367
ORF7a	116	L116L	ctC	ctT	1	1	A.21	0.00277
ORF7a	116	L116L	ctC	ctT	1	1	AB.1	0.008197
ORF7a	116	L116L	ctC	ctT	1	1	AD.2	0.000219
ORF7a	116	L116L	ctC	ctT	1	1	AY.104	0.001984
ORF7a	116	L116L	ctC	ctT	1	1	AY.105	0.000643
ORF7a	116	L116L	ctC	ctT	1	1	AY.111	0.000183
ORF7a	116	L116L	ctC	ctT	1	1	AY.116	0.000287
ORF7a	116	L116L	ctC	ctT	1	1	AY.21	0.001898
ORF7a	116	L116L	ctC	ctT	1	1	AY.39.2	0.001541
ORF7a	116	L116L	ctC	ctT	1	1	AY.4.2.1	0.000149
ORF7a	116	L116L	ctC	ctT	1	1	AY.4.4	0.000409
ORF7a	116	L116L	ctC	ctT	1	1	AY.46.1	0.001027
ORF7a	116	L116L	ctC	ctT	1	1	AY.46.3	0.000934
ORF7a	116	L116L	ctC	ctT	1	1	AY.46.5	0.000198
ORF7a	116	L116L	ctC	ctT	1	1	AY.48	0.000465
ORF7a	116	L116L	ctC	ctT	1	1	AY.53	0.000288
ORF7a	116	L116L	ctC	ctT	1	1	AY.58	0.000907
ORF7a	116	L116L	ctC	ctT	1	1	AY.62	0.000436
ORF7a	116	L116L	ctC	ctT	1	1	AY.63	0.000387
ORF7a	116	L116L	ctC	ctT	1	1	AY.64	0.000595
ORF7a	116	L116L	ctC	ctT	1	1	AY.7	0.000196
ORF7a	116	L116L	ctC	ctT	1	1	AY.7.1	0.000113
ORF7a	116	L116L	ctC	ctT	1	1	AY.70	0.000209
ORF7a	116	L116L	ctC	ctT	1	1	AY.79	0.001211
ORF7a	116	L116L	ctC	ctT	1	1	AY.82	0.001357
ORF7a	116	L116L	ctC	ctT	1	1	AY.90	0.000684
ORF7a	116	L116L	ctC	ctT	1	1	AY.92	0.000287
ORF7a	116	L116L	ctC	ctT	1	1	AY.96	0.002075
ORF7a	116	L116L	ctC	ctT	1	1	AZ.2	0.000821
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.13	0.035714
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.134	0.011364
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.168	0.026316
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.198	0.001468
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.219	0.005
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.221	0.010101
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.291	0.000742
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.307	0.002532
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.368	0.003086
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.374	0.002375
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.377	0.001381
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.411	0.014706
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.453	0.008475
ORF7a	116	L116L	ctC	ctT	1	1	B.1.1.486	0.001577
ORF7a	116	L116L	ctC	ctT	1	1	B.1.110	0.004525
ORF7a	116	L116L	ctC	ctT	1	1	B.1.115	0.021739
ORF7a	116	L116L	ctC	ctT	1	1	B.1.118	0.006711
ORF7a	116	L116L	ctC	ctT	1	1	B.1.126	0.001276
ORF7a	116	L116L	ctC	ctT	1	1	B.1.128	0.000635
ORF7a	116	L116L	ctC	ctT	1	1	B.1.147	0.000756
ORF7a	116	L116L	ctC	ctT	1	1	B.1.160.16	0.000929
ORF7a	116	L116L	ctC	ctT	1	1	B.1.160.22	0.006757
ORF7a	116	L116L	ctC	ctT	1	1	B.1.177.4	0.000211
ORF7a	116	L116L	ctC	ctT	1	1	B.1.177.44	0.000519
ORF7a	116	L116L	ctC	ctT	1	1	B.1.177.50	0.004695
ORF7a	116	L116L	ctC	ctT	1	1	B.1.203	0.0625
ORF7a	116	L116L	ctC	ctT	1	1	B.1.22	0.001318
ORF7a	116	L116L	ctC	ctT	1	1	B.1.258.24	0.010753
ORF7a	116	L116L	ctC	ctT	1	1	B.1.258.7	0.001912
ORF7a	116	L116L	ctC	ctT	1	1	B.1.267	0.018519
ORF7a	116	L116L	ctC	ctT	1	1	B.1.329	0.000608
ORF7a	116	L116L	ctC	ctT	1	1	B.1.346	0.001311
ORF7a	116	L116L	ctC	ctT	1	1	B.1.36.19	0.009259
ORF7a	116	L116L	ctC	ctT	1	1	B.1.36.21	0.00216
ORF7a	116	L116L	ctC	ctT	1	1	B.1.36.31	0.001751
ORF7a	116	L116L	ctC	ctT	1	1	B.1.36.8	0.001
ORF7a	116	L116L	ctC	ctT	1	1	B.1.361	0.001289
ORF7a	116	L116L	ctC	ctT	1	1	B.1.367	0.000792
ORF7a	116	L116L	ctC	ctT	1	1	B.1.391	0.001127
ORF7a	116	L116L	ctC	ctT	1	1	B.1.404	0.001302
ORF7a	116	L116L	ctC	ctT	1	1	B.1.415.1	0.007576
ORF7a	116	L116L	ctC	ctT	1	1	B.1.416	0.001269
ORF7a	116	L116L	ctC	ctT	1	1	B.1.416.1	0.001563
ORF7a	116	L116L	ctC	ctT	1	1	B.1.425	0.002994
ORF7a	116	L116L	ctC	ctT	1	1	B.1.428	0.00102
ORF7a	116	L116L	ctC	ctT	1	1	B.1.432	0.011236
ORF7a	116	L116L	ctC	ctT	1	1	B.1.462	0.007246
ORF7a	116	L116L	ctC	ctT	1	1	B.1.470	0.001404
ORF7a	116	L116L	ctC	ctT	1	1	B.1.493	0.025641
ORF7a	116	L116L	ctC	ctT	1	1	B.1.530	0.007143
ORF7a	116	L116L	ctC	ctT	1	1	B.1.540	0.009709
ORF7a	116	L116L	ctC	ctT	1	1	B.1.558	0.004566
ORF7a	116	L116L	ctC	ctT	1	1	B.1.568	0.001111
ORF7a	116	L116L	ctC	ctT	1	1	B.1.575.1	0.002439
ORF7a	116	L116L	ctC	ctT	1	1	B.1.576	0.000907
ORF7a	116	L116L	ctC	ctT	1	1	B.1.597	0.00463
ORF7a	116	L116L	ctC	ctT	1	1	B.1.606	0.006024
ORF7a	116	L116L	ctC	ctT	1	1	B.1.618	0.004032
ORF7a	116	L116L	ctC	ctT	1	1	B.1.619	0.000871
ORF7a	116	L116L	ctC	ctT	1	1	B.1.623	0.000536
ORF7a	116	L116L	ctC	ctT	1	1	B.1.76	0.011364
ORF7a	116	L116L	ctC	ctT	1	1	B.1.8	0.001972
ORF7a	116	L116L	ctC	ctT	1	1	B.1.93	0.000934
ORF7a	116	L116L	ctC	ctT	1	1	B.3.1	0.001658
ORF7a	116	L116L	ctC	ctT	1	1	B.4	0.002208
ORF7a	116	L116L	ctC	ctT	1	1	B.40	0.000364
ORF7a	116	L116L	ctC	ctT	1	1	C.1.1	0.076923
ORF7a	116	L116L	ctC	ctT	1	1	C.2	0.016129
ORF7a	116	L116L	ctC	ctT	1	1	C.36	0.000911
ORF7a	116	L116L	ctC	ctT	1	1	C.36.3	0.000567
ORF7a	116	L116L	ctC	ctT	1	1	C.40	0.027778
ORF7a	116	L116L	ctC	ctT	1	1	C.7	0.034483
ORF7a	116	L116L	ctC	ctT	1	1	C.9	0.030303
ORF7a	116	L116L	ctC	ctT	1	1	N.6	0.007092
ORF7a	116	L116L	ctC	ctT	1	1	P.1.10	0.000269
ORF7a	116	L116L	ctC	ctT	1	1	P.1.16	0.000374
ORF7a	116	L116L	ctC	ctT	1	1	P.1.5	0.076923
ORF7a	116	L116L	ctC	ctT	1	1	P.1.7	0.000319
ORF7a	116	L116L	ctC	ctT	1	1	P.3	0.001595
ORF7a	116	L116L	ctC	ctT	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.