CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 116 | L116F | nonsyn | Ctc | Ttc | 75715 | 75670 | 0.999406 | 27739-27741 | |
ORF7a | 116 | L116F | nonsyn | CtC | TtT | 75715 | 45 | 0.000594334 | 27739-27741 | |
ORF7a | 116 | L116L | syn | ctC | ctT | 8400 | 8130 | 0.967857 | 27739-27741 | |
ORF7a | 116 | L116L | syn | ctC | ctA | 8400 | 215 | 0.0255952 | 27739-27741 | |
ORF7a | 116 | L116L | syn | ctC | ctG | 8400 | 48 | 0.00571429 | 27739-27741 | |
ORF7a | 116 | L116L | syn | CtC | TtA | 8400 | 7 | 0.000833333 | 27739-27741 | |
ORF7a | 116 | L116del | del | CTC | --- | 3224 | 3224 | 1 | 27739-27741 | |
ORF7a | 116 | L116P | nonsyn | cTc | cCc | 228 | 226 | 0.991228 | 27739-27741 | |
ORF7a | 116 | L116P | nonsyn | cTC | cCT | 228 | 2 | 0.00877193 | 27739-27741 | |
ORF7a | 116 | L116del1 | del | ctC | ct- | 186 | 144 | 0.774194 | 27739-27741 | |
ORF7a | 116 | L116del1 | del | Ctc | -tc | 186 | 36 | 0.193548 | 27739-27741 | |
ORF7a | 116 | L116del1 | del | cTc | c-c | 186 | 3 | 0.016129 | 27739-27741 | |
ORF7a | 116 | L116del1 | del | CtC | -tT | 186 | 2 | 0.0107527 | 27739-27741 | |
ORF7a | 116 | L116del1 | del | CtC | -tN | 186 | 1 | 0.00537634 | 27739-27741 | |
ORF7a | 116 | L116I | nonsyn | Ctc | Atc | 149 | 146 | 0.979866 | 27739-27741 | |
ORF7a | 116 | L116I | nonsyn | CtC | AtT | 149 | 3 | 0.0201342 | 27739-27741 | |
ORF7a | 116 | L116H | nonsyn | cTc | cAc | 97 | 97 | 1 | 27739-27741 | |
ORF7a | 116 | L116del2 | del | CTc | --c | 86 | 77 | 0.895349 | 27739-27741 | |
ORF7a | 116 | L116del2 | del | cTC | c-- | 86 | 6 | 0.0697674 | 27739-27741 | |
ORF7a | 116 | L116del2 | del | CTC | --N | 86 | 2 | 0.0232558 | 27739-27741 | |
ORF7a | 116 | L116del2 | del | CTC | --T | 86 | 1 | 0.0116279 | 27739-27741 | |
ORF7a | 116 | L116R | nonsyn | cTc | cGc | 55 | 53 | 0.963636 | 27739-27741 | |
ORF7a | 116 | L116R | nonsyn | cTC | cGT | 55 | 1 | 0.0181818 | 27739-27741 | |
ORF7a | 116 | L116R | nonsyn | cTC | cGA | 55 | 1 | 0.0181818 | 27739-27741 | |
ORF7a | 116 | L116V | nonsyn | Ctc | Gtc | 45 | 45 | 1 | 27739-27741 | |
ORF7a | 116 | L116S | nonsyn | CTc | TCc | 5 | 4 | 0.8 | 27739-27741 | |
ORF7a | 116 | L116S | nonsyn | CTc | AGc | 5 | 1 | 0.2 | 27739-27741 | |
ORF7a | 116 | L116Q | nonsyn | cTC | cAA | 4 | 4 | 1 | 27739-27741 | |
ORF7a | 116 | L116N | nonsyn | CTc | AAc | 3 | 3 | 1 | 27739-27741 | |
ORF7a | 116 | L116T | nonsyn | CTc | ACc | 2 | 2 | 1 | 27739-27741 | |
ORF7a | 116 | L116Y | nonsyn | CTc | TAc | 1 | 1 | 1 | 27739-27741 | |
ORF7a | 116 | L116A | nonsyn | CTC | GCA | 1 | 1 | 1 | 27739-27741 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 116 | L116F | Ctc | Ttc | 75670 | 75715 | All | 0.014473 |
ORF7a | 116 | L116F | CtC | TtT | 45 | 75715 | All | 0.000009 |
ORF7a | 116 | L116F | Ctc | Ttc | 17865 | 17875 | B.1.617.2 | 0.067269 |
ORF7a | 116 | L116F | CtC | TtT | 10 | 17875 | B.1.617.2 | 0.000038 |
ORF7a | 116 | L116F | Ctc | Ttc | 12445 | 12456 | B.1.526 | 0.292514 |
ORF7a | 116 | L116F | CtC | TtT | 11 | 12456 | B.1.526 | 0.000259 |
ORF7a | 116 | L116F | Ctc | Ttc | 10720 | 10722 | AY.14 | 0.943496 |
ORF7a | 116 | L116F | CtC | TtT | 2 | 10722 | AY.14 | 0.000176 |
ORF7a | 116 | L116F | Ctc | Ttc | 9244 | 9253 | AY.54 | 0.881388 |
ORF7a | 116 | L116F | CtC | TtT | 9 | 9253 | AY.54 | 0.000858 |
ORF7a | 116 | L116L | ctC | ctT | 8130 | 8400 | All | 0.001555 |
ORF7a | 116 | L116L | ctC | ctA | 215 | 8400 | All | 0.000041 |
ORF7a | 116 | L116L | ctC | ctG | 48 | 8400 | All | 0.000009 |
ORF7a | 116 | L116L | CtC | TtA | 7 | 8400 | All | 0.000001 |
ORF7a | 116 | L116F | Ctc | Ttc | 5248 | 5249 | AY.13 | 0.844816 |
ORF7a | 116 | L116F | CtC | TtT | 1 | 5249 | AY.13 | 0.000161 |
ORF7a | 116 | L116del | CTC | --- | 3224 | 3224 | All | 0.000617 |
ORF7a | 116 | L116F | Ctc | Ttc | 3045 | 3045 | AY.53 | 0.875503 |
ORF7a | 116 | L116L | ctC | ctT | 2566 | 2598 | B.1.1.7 | 0.002297 |
ORF7a | 116 | L116L | ctC | ctA | 18 | 2598 | B.1.1.7 | 0.000016 |
ORF7a | 116 | L116L | ctC | ctG | 13 | 2598 | B.1.1.7 | 0.000012 |
ORF7a | 116 | L116L | CtC | TtA | 1 | 2598 | B.1.1.7 | 0.000001 |
ORF7a | 116 | L116F | Ctc | Ttc | 2392 | 2394 | AY.30 | 0.946577 |
ORF7a | 116 | L116F | CtC | TtT | 2 | 2394 | AY.30 | 0.000791 |
ORF7a | 116 | L116F | Ctc | Ttc | 2165 | 2166 | AY.16 | 0.821944 |
ORF7a | 116 | L116F | CtC | TtT | 1 | 2166 | AY.16 | 0.00038 |
ORF7a | 116 | L116F | Ctc | Ttc | 1603 | 1604 | AY.8 | 0.971515 |
ORF7a | 116 | L116F | CtC | TtT | 1 | 1604 | AY.8 | 0.000606 |
ORF7a | 116 | L116F | Ctc | Ttc | 1163 | 1163 | AY.50 | 0.929656 |
ORF7a | 116 | L116del | CTC | --- | 1110 | 1110 | B.1.1.7 | 0.000994 |
ORF7a | 116 | L116F | Ctc | Ttc | 1022 | 1022 | AY.51 | 0.929091 |
ORF7a | 116 | L116F | Ctc | Ttc | 780 | 781 | B.1.1.7 | 0.000698 |
ORF7a | 116 | L116F | CtC | TtT | 1 | 781 | B.1.1.7 | 0.000001 |
ORF7a | 116 | L116F | Ctc | Ttc | 743 | 743 | AY.40 | 0.71649 |
ORF7a | 116 | L116F | Ctc | Ttc | 701 | 701 | AY.52 | 0.570847 |
ORF7a | 116 | L116L | ctC | ctT | 392 | 539 | AY.4 | 0.00061 |
ORF7a | 116 | L116L | ctC | ctA | 147 | 539 | AY.4 | 0.000229 |
ORF7a | 116 | L116L | ctC | ctT | 473 | 478 | B.1.2 | 0.004165 |
ORF7a | 116 | L116L | ctC | ctA | 5 | 478 | B.1.2 | 0.000044 |
ORF7a | 116 | L116F | Ctc | Ttc | 473 | 473 | AY.16.1 | 0.222274 |
ORF7a | 116 | L116F | Ctc | Ttc | 440 | 441 | AY.15 | 0.977778 |
ORF7a | 116 | L116F | CtC | TtT | 1 | 441 | AY.15 | 0.002222 |
ORF7a | 116 | L116del | CTC | --- | 420 | 420 | AY.4 | 0.000654 |
ORF7a | 116 | L116F | Ctc | Ttc | 383 | 383 | AY.44 | 0.002331 |
ORF7a | 116 | L116L | ctC | ctT | 357 | 367 | B.1.617.2 | 0.001344 |
ORF7a | 116 | L116L | ctC | ctA | 9 | 367 | B.1.617.2 | 0.000034 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 367 | B.1.617.2 | 0.000004 |
ORF7a | 116 | L116F | Ctc | Ttc | 311 | 311 | AY.43 | 0.001378 |
ORF7a | 116 | L116L | ctC | ctT | 294 | 300 | AY.44 | 0.00179 |
ORF7a | 116 | L116L | ctC | ctG | 4 | 300 | AY.44 | 0.000024 |
ORF7a | 116 | L116L | CtC | TtA | 1 | 300 | AY.44 | 0.000006 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 300 | AY.44 | 0.000006 |
ORF7a | 116 | L116L | ctC | ctT | 279 | 290 | B.1 | 0.002556 |
ORF7a | 116 | L116L | ctC | ctG | 6 | 290 | B.1 | 0.000055 |
ORF7a | 116 | L116L | ctC | ctA | 5 | 290 | B.1 | 0.000046 |
ORF7a | 116 | L116F | Ctc | Ttc | 251 | 251 | AY.19 | 0.286203 |
ORF7a | 116 | L116L | ctC | ctT | 238 | 238 | AY.103 | 0.001478 |
ORF7a | 116 | L116P | cTc | cCc | 226 | 228 | All | 0.000043 |
ORF7a | 116 | L116P | cTC | cCT | 2 | 228 | All | 0 |
ORF7a | 116 | L116F | Ctc | Ttc | 223 | 225 | AY.26 | 0.006313 |
ORF7a | 116 | L116F | CtC | TtT | 2 | 225 | AY.26 | 0.000057 |
ORF7a | 116 | L116F | Ctc | Ttc | 224 | 224 | AY.49 | 0.715655 |
ORF7a | 116 | L116L | ctC | ctT | 223 | 224 | B.1.177 | 0.002936 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 224 | B.1.177 | 0.000013 |
ORF7a | 116 | L116F | Ctc | Ttc | 198 | 198 | AY.3 | 0.001969 |
ORF7a | 116 | L116F | Ctc | Ttc | 197 | 197 | AY.4 | 0.000307 |
ORF7a | 116 | L116del1 | ctC | ct- | 144 | 186 | All | 0.000028 |
ORF7a | 116 | L116del1 | Ctc | -tc | 36 | 186 | All | 0.000007 |
ORF7a | 116 | L116del1 | cTc | c-c | 3 | 186 | All | 0.000001 |
ORF7a | 116 | L116del1 | CtC | -tT | 2 | 186 | All | 0 |
ORF7a | 116 | L116del1 | CtC | -tN | 1 | 186 | All | 0 |
ORF7a | 116 | L116del | CTC | --- | 183 | 183 | AY.83 | 0.315517 |
ORF7a | 116 | L116L | ctC | ctT | 172 | 173 | AY.3 | 0.001711 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 173 | AY.3 | 0.00001 |
ORF7a | 116 | L116F | Ctc | Ttc | 170 | 170 | AY.48 | 0.07907 |
ORF7a | 116 | L116F | Ctc | Ttc | 169 | 169 | B.1 | 0.001548 |
ORF7a | 116 | L116L | ctC | ctT | 157 | 158 | AY.43 | 0.000696 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 158 | AY.43 | 0.000004 |
ORF7a | 116 | L116del | CTC | --- | 152 | 152 | AY.25 | 0.000914 |
ORF7a | 116 | L116I | Ctc | Atc | 146 | 149 | All | 0.000028 |
ORF7a | 116 | L116I | CtC | AtT | 3 | 149 | All | 0.000001 |
ORF7a | 116 | L116L | ctC | ctT | 143 | 145 | P.1 | 0.002253 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 145 | P.1 | 0.000016 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 145 | P.1 | 0.000016 |
ORF7a | 116 | L116F | Ctc | Ttc | 140 | 140 | B.1.160 | 0.004366 |
ORF7a | 116 | L116L | ctC | ctT | 129 | 135 | AY.25 | 0.000776 |
ORF7a | 116 | L116L | ctC | ctA | 5 | 135 | AY.25 | 0.00003 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 135 | AY.25 | 0.000006 |
ORF7a | 116 | L116F | Ctc | Ttc | 133 | 133 | AY.38 | 0.0664 |
ORF7a | 116 | L116L | ctC | ctT | 127 | 130 | B.1.596 | 0.011067 |
ORF7a | 116 | L116L | ctC | ctG | 3 | 130 | B.1.596 | 0.000261 |
ORF7a | 116 | L116L | ctC | ctT | 127 | 127 | B.1.177.56 | 0.08478 |
ORF7a | 116 | L116F | Ctc | Ttc | 126 | 126 | AY.29 | 0.001987 |
ORF7a | 116 | L116L | ctC | ctT | 121 | 121 | B.1.1.50 | 0.082145 |
ORF7a | 116 | L116F | Ctc | Ttc | 119 | 119 | AY.62 | 0.051852 |
ORF7a | 116 | L116F | Ctc | Ttc | 117 | 118 | B.1.2 | 0.00103 |
ORF7a | 116 | L116F | CtC | TtT | 1 | 118 | B.1.2 | 0.000009 |
ORF7a | 116 | L116F | Ctc | Ttc | 107 | 107 | B.1.1.317 | 0.044051 |
ORF7a | 116 | L116L | ctC | ctT | 106 | 106 | B.1.221 | 0.007529 |
ORF7a | 116 | L116F | Ctc | Ttc | 98 | 98 | AY.18 | 0.989899 |
ORF7a | 116 | L116del | CTC | --- | 98 | 98 | AY.33 | 0.006544 |
ORF7a | 116 | L116H | cTc | cAc | 97 | 97 | All | 0.000019 |
ORF7a | 116 | L116F | Ctc | Ttc | 95 | 95 | AY.98 | 0.007505 |
ORF7a | 116 | L116del | CTC | --- | 95 | 95 | B.1.617.2 | 0.000358 |
ORF7a | 116 | L116F | Ctc | Ttc | 89 | 89 | AY.55 | 0.081651 |
ORF7a | 116 | L116L | ctC | ctT | 89 | 89 | B.1.526 | 0.002092 |
ORF7a | 116 | L116F | Ctc | Ttc | 87 | 87 | AY.17 | 0.713115 |
ORF7a | 116 | L116del2 | CTc | --c | 77 | 86 | All | 0.000015 |
ORF7a | 116 | L116del2 | cTC | c-- | 6 | 86 | All | 0.000001 |
ORF7a | 116 | L116del2 | CTC | --N | 2 | 86 | All | 0 |
ORF7a | 116 | L116del2 | CTC | --T | 1 | 86 | All | 0 |
ORF7a | 116 | L116L | ctC | ctT | 85 | 86 | AY.20 | 0.003304 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 86 | AY.20 | 0.000039 |
ORF7a | 116 | L116H | cTc | cAc | 83 | 83 | B.1.1.7 | 0.000074 |
ORF7a | 116 | L116F | Ctc | Ttc | 82 | 82 | AY.25 | 0.000493 |
ORF7a | 116 | L116F | Ctc | Ttc | 82 | 82 | AY.67 | 0.038069 |
ORF7a | 116 | L116del1 | ctC | ct- | 63 | 81 | B.1.1.7 | 0.000056 |
ORF7a | 116 | L116del1 | Ctc | -tc | 18 | 81 | B.1.1.7 | 0.000016 |
ORF7a | 116 | L116F | Ctc | Ttc | 79 | 79 | B.1.177 | 0.00104 |
ORF7a | 116 | L116L | ctC | ctT | 78 | 78 | AY.47 | 0.002426 |
ORF7a | 116 | L116F | Ctc | Ttc | 77 | 77 | AY.75 | 0.004314 |
ORF7a | 116 | L116del | CTC | --- | 76 | 76 | AY.3 | 0.000756 |
ORF7a | 116 | L116L | ctC | ctT | 73 | 75 | B.1.1 | 0.001324 |
ORF7a | 116 | L116L | ctC | ctG | 2 | 75 | B.1.1 | 0.000036 |
ORF7a | 116 | L116F | Ctc | Ttc | 70 | 70 | AY.102 | 0.001856 |
ORF7a | 116 | L116F | Ctc | Ttc | 66 | 66 | AY.103 | 0.00041 |
ORF7a | 116 | L116del1 | ctC | ct- | 61 | 63 | AY.4 | 0.000095 |
ORF7a | 116 | L116del1 | Ctc | -tc | 2 | 63 | AY.4 | 0.000003 |
ORF7a | 116 | L116L | ctC | ctT | 63 | 63 | B.1.177.81 | 0.011927 |
ORF7a | 116 | L116del | CTC | --- | 62 | 62 | AY.29 | 0.000978 |
ORF7a | 116 | L116L | ctC | ctT | 56 | 59 | AY.26 | 0.001585 |
ORF7a | 116 | L116L | ctC | ctG | 3 | 59 | AY.26 | 0.000085 |
ORF7a | 116 | L116L | ctC | ctT | 58 | 58 | B.1.1.231 | 0.179567 |
ORF7a | 116 | L116del | CTC | --- | 56 | 56 | AY.46 | 0.005828 |
ORF7a | 116 | L116R | cTc | cGc | 53 | 55 | All | 0.00001 |
ORF7a | 116 | L116R | cTC | cGT | 1 | 55 | All | 0 |
ORF7a | 116 | L116R | cTC | cGA | 1 | 55 | All | 0 |
ORF7a | 116 | L116L | ctC | ctT | 55 | 55 | AY.113 | 0.007831 |
ORF7a | 116 | L116del | CTC | --- | 55 | 55 | AY.44 | 0.000335 |
ORF7a | 116 | L116L | ctC | ctT | 53 | 55 | B.1.243 | 0.003688 |
ORF7a | 116 | L116L | ctC | ctA | 2 | 55 | B.1.243 | 0.000139 |
ORF7a | 116 | L116del | CTC | --- | 52 | 52 | AY.26 | 0.001472 |
ORF7a | 116 | L116F | Ctc | Ttc | 52 | 52 | AY.31 | 0.962963 |
ORF7a | 116 | L116F | Ctc | Ttc | 52 | 52 | AY.61 | 0.005448 |
ORF7a | 116 | L116F | Ctc | Ttc | 50 | 50 | AY.64 | 0.029762 |
ORF7a | 116 | L116del | CTC | --- | 49 | 49 | AY.103 | 0.000304 |
ORF7a | 116 | L116del | CTC | --- | 48 | 48 | AY.42 | 0.001931 |
ORF7a | 116 | L116L | ctC | ctT | 47 | 47 | AY.3.1 | 0.004007 |
ORF7a | 116 | L116F | Ctc | Ttc | 47 | 47 | AY.56 | 0.075441 |
ORF7a | 116 | L116L | ctC | ctT | 47 | 47 | B.1.1.519 | 0.001866 |
ORF7a | 116 | L116V | Ctc | Gtc | 45 | 45 | All | 0.000009 |
ORF7a | 116 | L116F | Ctc | Ttc | 45 | 45 | AY.105 | 0.028939 |
ORF7a | 116 | L116del | CTC | --- | 44 | 44 | AY.43 | 0.000195 |
ORF7a | 116 | L116L | ctC | ctT | 42 | 42 | AY.4.2 | 0.000911 |
ORF7a | 116 | L116L | ctC | ctT | 42 | 42 | B.1.429 | 0.000988 |
ORF7a | 116 | L116del | CTC | --- | 41 | 41 | B.1.2 | 0.000361 |
ORF7a | 116 | L116L | ctC | ctT | 41 | 41 | B.1.637 | 0.002996 |
ORF7a | 116 | L116del | CTC | --- | 41 | 41 | P.1 | 0.000646 |
ORF7a | 116 | L116F | Ctc | Ttc | 40 | 40 | AY.119 | 0.001412 |
ORF7a | 116 | L116F | Ctc | Ttc | 39 | 39 | AY.10 | 0.020668 |
ORF7a | 116 | L116F | Ctc | Ttc | 39 | 39 | AY.4.3 | 0.032828 |
ORF7a | 116 | L116P | cTc | cCc | 38 | 38 | AY.4 | 0.000059 |
ORF7a | 116 | L116F | Ctc | Ttc | 38 | 38 | B.1.1 | 0.000689 |
ORF7a | 116 | L116L | ctC | ctT | 37 | 37 | AY.5 | 0.000764 |
ORF7a | 116 | L116F | Ctc | Ttc | 36 | 36 | P.1 | 0.000567 |
ORF7a | 116 | L116F | Ctc | Ttc | 35 | 35 | AY.33 | 0.002337 |
ORF7a | 116 | L116F | Ctc | Ttc | 35 | 35 | AY.46 | 0.003643 |
ORF7a | 116 | L116L | ctC | ctT | 35 | 35 | B.1.1.51 | 0.060137 |
ORF7a | 116 | L116L | ctC | ctT | 35 | 35 | B.1.427 | 0.001767 |
ORF7a | 116 | L116del | CTC | --- | 34 | 34 | AY.74 | 0.003932 |
ORF7a | 116 | L116F | Ctc | Ttc | 34 | 34 | AY.75.1 | 0.006131 |
ORF7a | 116 | L116F | Ctc | Ttc | 33 | 33 | AY.117 | 0.002789 |
ORF7a | 116 | L116F | Ctc | Ttc | 33 | 33 | AY.85 | 0.014097 |
ORF7a | 116 | L116L | ctC | ctT | 32 | 32 | AY.39.1 | 0.001268 |
ORF7a | 116 | L116L | ctC | ctT | 32 | 32 | B.1.36.16 | 0.045584 |
ORF7a | 116 | L116F | Ctc | Ttc | 32 | 32 | B.1.429 | 0.000753 |
ORF7a | 116 | L116F | Ctc | Ttc | 31 | 31 | AE.3 | 1 |
ORF7a | 116 | L116L | ctC | ctT | 31 | 31 | B.1.1.434 | 0.010805 |
ORF7a | 116 | L116F | Ctc | Ttc | 31 | 31 | B.1.621 | 0.002744 |
ORF7a | 116 | L116F | Ctc | Ttc | 30 | 30 | AY.47 | 0.000933 |
ORF7a | 116 | L116F | Ctc | Ttc | 30 | 30 | AY.59 | 0.01589 |
ORF7a | 116 | L116F | Ctc | Ttc | 30 | 30 | AY.7.1 | 0.003381 |
ORF7a | 116 | L116del | CTC | --- | 30 | 30 | B.1 | 0.000275 |
ORF7a | 116 | L116L | ctC | ctT | 27 | 29 | AY.117 | 0.002282 |
ORF7a | 116 | L116L | ctC | ctA | 2 | 29 | AY.117 | 0.000169 |
ORF7a | 116 | L116F | Ctc | Ttc | 29 | 29 | AY.37 | 0.009166 |
ORF7a | 116 | L116F | Ctc | Ttc | 29 | 29 | AY.42 | 0.001167 |
ORF7a | 116 | L116F | Ctc | Ttc | 29 | 29 | AY.70 | 0.006047 |
ORF7a | 116 | L116F | Ctc | Ttc | 29 | 29 | AY.9.2 | 0.001065 |
ORF7a | 116 | L116L | ctC | ctT | 29 | 29 | N.10 | 0.852941 |
ORF7a | 116 | L116L | ctC | ctT | 27 | 28 | AY.102 | 0.000716 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 28 | AY.102 | 0.000027 |
ORF7a | 116 | L116L | ctC | ctT | 27 | 27 | AY.29 | 0.000426 |
ORF7a | 116 | L116F | Ctc | Ttc | 26 | 26 | AY.39 | 0.000642 |
ORF7a | 116 | L116F | Ctc | Ttc | 26 | 26 | AY.45 | 0.003164 |
ORF7a | 116 | L116del | CTC | --- | 26 | 26 | AY.7 | 0.005096 |
ORF7a | 116 | L116L | ctC | ctT | 26 | 26 | AY.9.2 | 0.000955 |
ORF7a | 116 | L116P | cTc | cCc | 24 | 25 | AY.103 | 0.000149 |
ORF7a | 116 | L116P | cTC | cCT | 1 | 25 | AY.103 | 0.000006 |
ORF7a | 116 | L116F | Ctc | Ttc | 25 | 25 | AY.99.2 | 0.002304 |
ORF7a | 116 | L116R | cTc | cGc | 24 | 25 | B.1.1.7 | 0.000021 |
ORF7a | 116 | L116R | cTC | cGT | 1 | 25 | B.1.1.7 | 0.000001 |
ORF7a | 116 | L116L | ctC | ctT | 25 | 25 | B.1.551 | 0.032258 |
ORF7a | 116 | L116L | ctC | ctT | 24 | 24 | B.1.1.222 | 0.004896 |
ORF7a | 116 | L116F | Ctc | Ttc | 23 | 23 | AY.86 | 0.019087 |
ORF7a | 116 | L116I | Ctc | Atc | 23 | 23 | B.1.1.7 | 0.000021 |
ORF7a | 116 | L116L | ctC | ctT | 23 | 23 | P.1.14 | 0.001099 |
ORF7a | 116 | L116F | Ctc | Ttc | 22 | 22 | B.1.214 | 0.080586 |
ORF7a | 116 | L116P | cTc | cCc | 22 | 22 | B.1.628 | 0.007752 |
ORF7a | 116 | L116del | CTC | --- | 21 | 21 | AY.53 | 0.006038 |
ORF7a | 116 | L116F | Ctc | Ttc | 21 | 21 | AY.58 | 0.019056 |
ORF7a | 116 | L116I | Ctc | Atc | 21 | 21 | B.1.160 | 0.000655 |
ORF7a | 116 | L116F | Ctc | Ttc | 20 | 21 | B.1.596 | 0.001743 |
ORF7a | 116 | L116F | CtC | TtT | 1 | 21 | B.1.596 | 0.000087 |
ORF7a | 116 | L116L | ctC | ctT | 21 | 21 | C.37 | 0.002437 |
ORF7a | 116 | L116del | CTC | --- | 20 | 20 | B.1.177 | 0.000263 |
ORF7a | 116 | L116L | ctC | ctT | 20 | 20 | B.1.234 | 0.002639 |
ORF7a | 116 | L116del | CTC | --- | 20 | 20 | B.1.370 | 0.16 |
ORF7a | 116 | L116L | ctC | ctT | 20 | 20 | P.1.15 | 0.004647 |
ORF7a | 116 | L116del | CTC | --- | 19 | 19 | AY.39 | 0.00047 |
ORF7a | 116 | L116del | CTC | --- | 19 | 19 | B.1.1.519 | 0.000755 |
ORF7a | 116 | L116L | ctC | ctT | 19 | 19 | B.1.177.21 | 0.001453 |
ORF7a | 116 | L116L | ctC | ctT | 19 | 19 | P.2 | 0.003546 |
ORF7a | 116 | L116del | CTC | --- | 18 | 18 | AY.102 | 0.000477 |
ORF7a | 116 | L116F | Ctc | Ttc | 18 | 18 | AY.35 | 0.004195 |
ORF7a | 116 | L116F | Ctc | Ttc | 18 | 18 | AY.5.4 | 0.004981 |
ORF7a | 116 | L116F | Ctc | Ttc | 18 | 18 | AY.78 | 0.027735 |
ORF7a | 116 | L116F | Ctc | Ttc | 18 | 18 | AY.98.1 | 0.000872 |
ORF7a | 116 | L116L | ctC | ctT | 18 | 18 | B.1.311 | 0.004942 |
ORF7a | 116 | L116L | ctC | ctT | 17 | 17 | AY.33 | 0.001135 |
ORF7a | 116 | L116F | Ctc | Ttc | 17 | 17 | AY.68 | 0.004654 |
ORF7a | 116 | L116F | Ctc | Ttc | 17 | 17 | AY.92 | 0.004884 |
ORF7a | 116 | L116del | CTC | --- | 17 | 17 | B.1.1 | 0.000308 |
ORF7a | 116 | L116del | CTC | --- | 17 | 17 | B.1.1.214 | 0.000943 |
ORF7a | 116 | L116del | CTC | --- | 17 | 17 | B.1.526 | 0.0004 |
ORF7a | 116 | L116F | Ctc | Ttc | 16 | 16 | AY.110 | 0.001803 |
ORF7a | 116 | L116del | CTC | --- | 16 | 16 | AY.113 | 0.002278 |
ORF7a | 116 | L116P | cTc | cCc | 16 | 16 | AY.20 | 0.000622 |
ORF7a | 116 | L116L | ctC | ctT | 16 | 16 | AY.23 | 0.001116 |
ORF7a | 116 | L116V | Ctc | Gtc | 16 | 16 | AY.26 | 0.000453 |
ORF7a | 116 | L116L | ctC | ctT | 14 | 16 | AY.39 | 0.000346 |
ORF7a | 116 | L116L | ctC | ctG | 2 | 16 | AY.39 | 0.000049 |
ORF7a | 116 | L116F | Ctc | Ttc | 16 | 16 | AY.73 | 0.010645 |
ORF7a | 116 | L116L | ctC | ctT | 16 | 16 | B.1.36.29 | 0.008277 |
ORF7a | 116 | L116L | ctC | ctT | 14 | 15 | AY.100 | 0.000644 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 15 | AY.100 | 0.000046 |
ORF7a | 116 | L116L | ctC | ctT | 15 | 15 | AY.119 | 0.00053 |
ORF7a | 116 | L116F | Ctc | Ttc | 15 | 15 | AZ.1 | 0.01301 |
ORF7a | 116 | L116del | CTC | --- | 15 | 15 | B.1.234 | 0.001979 |
ORF7a | 116 | L116L | ctC | ctT | 14 | 15 | B.1.351 | 0.000416 |
ORF7a | 116 | L116F | Ctc | Ttc | 14 | 15 | B.1.351 | 0.000416 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 15 | B.1.351 | 0.00003 |
ORF7a | 116 | L116F | CtC | TtT | 1 | 15 | B.1.351 | 0.00003 |
ORF7a | 116 | L116F | Ctc | Ttc | 14 | 14 | AY.20 | 0.000544 |
ORF7a | 116 | L116F | Ctc | Ttc | 14 | 14 | AY.9 | 0.000946 |
ORF7a | 116 | L116del | CTC | --- | 14 | 14 | B.1.1.37 | 0.0027 |
ORF7a | 116 | L116L | ctC | ctT | 14 | 14 | B.1.1.397 | 0.031532 |
ORF7a | 116 | L116L | ctC | ctT | 14 | 14 | B.1.550 | 0.191781 |
ORF7a | 116 | L116L | ctC | ctT | 11 | 14 | B.1.561 | 0.004367 |
ORF7a | 116 | L116L | ctC | ctA | 3 | 14 | B.1.561 | 0.001191 |
ORF7a | 116 | L116L | ctC | ctT | 14 | 14 | B.1.617.1 | 0.001806 |
ORF7a | 116 | L116del | CTC | --- | 13 | 13 | AY.121 | 0.001759 |
ORF7a | 116 | L116F | Ctc | Ttc | 13 | 13 | AY.23 | 0.000907 |
ORF7a | 116 | L116F | Ctc | Ttc | 13 | 13 | AY.24 | 0.005603 |
ORF7a | 116 | L116F | Ctc | Ttc | 13 | 13 | AY.28 | 0.024575 |
ORF7a | 116 | L116F | Ctc | Ttc | 13 | 13 | AY.41 | 0.003821 |
ORF7a | 116 | L116L | ctC | ctT | 11 | 13 | AY.42 | 0.000443 |
ORF7a | 116 | L116L | ctC | ctG | 2 | 13 | AY.42 | 0.00008 |
ORF7a | 116 | L116I | Ctc | Atc | 13 | 13 | AY.44 | 0.000079 |
ORF7a | 116 | L116L | ctC | ctT | 13 | 13 | AY.45 | 0.001582 |
ORF7a | 116 | L116L | ctC | ctT | 13 | 13 | AY.61 | 0.001362 |
ORF7a | 116 | L116F | Ctc | Ttc | 13 | 13 | AY.69 | 0.002427 |
ORF7a | 116 | L116F | Ctc | Ttc | 13 | 13 | AY.79 | 0.015738 |
ORF7a | 116 | L116L | ctC | ctT | 13 | 13 | AY.98 | 0.001027 |
ORF7a | 116 | L116L | ctC | ctT | 13 | 13 | B.1.111 | 0.015276 |
ORF7a | 116 | L116L | ctC | ctT | 13 | 13 | B.1.160.27 | 0.19697 |
ORF7a | 116 | L116F | Ctc | Ttc | 13 | 13 | B.1.311 | 0.003569 |
ORF7a | 116 | L116P | cTc | cCc | 13 | 13 | B.1.617.2 | 0.000049 |
ORF7a | 116 | L116del2 | CTc | --c | 13 | 13 | P.1 | 0.000205 |
ORF7a | 116 | L116L | ctC | ctT | 13 | 13 | Q.8 | 0.002144 |
ORF7a | 116 | L116P | cTc | cCc | 12 | 12 | AY.113 | 0.001709 |
ORF7a | 116 | L116L | ctC | ctT | 11 | 12 | AY.120 | 0.000409 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 12 | AY.120 | 0.000037 |
ORF7a | 116 | L116F | Ctc | Ttc | 12 | 12 | AY.21 | 0.02277 |
ORF7a | 116 | L116P | cTc | cCc | 11 | 12 | AY.3 | 0.000109 |
ORF7a | 116 | L116P | cTC | cCT | 1 | 12 | AY.3 | 0.00001 |
ORF7a | 116 | L116L | ctC | ctT | 12 | 12 | AY.35 | 0.002797 |
ORF7a | 116 | L116L | ctC | ctT | 12 | 12 | AY.36 | 0.001779 |
ORF7a | 116 | L116P | cTc | cCc | 12 | 12 | B.1.351 | 0.000357 |
ORF7a | 116 | L116L | ctC | ctT | 12 | 12 | B.1.36 | 0.001751 |
ORF7a | 116 | L116L | ctC | ctT | 12 | 12 | B.1.516 | 0.023483 |
ORF7a | 116 | L116del2 | CTc | --c | 12 | 12 | B.1.617.2 | 0.000045 |
ORF7a | 116 | L116I | Ctc | Atc | 12 | 12 | B.1.617.2 | 0.000045 |
ORF7a | 116 | L116F | Ctc | Ttc | 11 | 11 | AY.100 | 0.000506 |
ORF7a | 116 | L116F | Ctc | Ttc | 11 | 11 | AY.39.1 | 0.000436 |
ORF7a | 116 | L116F | Ctc | Ttc | 11 | 11 | AY.4.2 | 0.000239 |
ORF7a | 116 | L116F | Ctc | Ttc | 11 | 11 | B.1.1.369 | 0.004909 |
ORF7a | 116 | L116F | Ctc | Ttc | 11 | 11 | B.1.377 | 0.050228 |
ORF7a | 116 | L116L | ctC | ctT | 11 | 11 | C.34 | 0.407407 |
ORF7a | 116 | L116del | CTC | --- | 10 | 10 | AY.119 | 0.000353 |
ORF7a | 116 | L116del2 | CTc | --c | 10 | 10 | AY.4 | 0.000016 |
ORF7a | 116 | L116del | CTC | --- | 10 | 10 | AY.6 | 0.000411 |
ORF7a | 116 | L116F | Ctc | Ttc | 10 | 10 | AY.9.1 | 0.000837 |
ORF7a | 116 | L116F | Ctc | Ttc | 10 | 10 | B.1.1.519 | 0.000397 |
ORF7a | 116 | L116L | ctC | ctT | 10 | 10 | B.1.525 | 0.001132 |
ORF7a | 116 | L116L | ctC | ctT | 10 | 10 | P.1.4 | 0.009766 |
ORF7a | 116 | L116L | ctC | ctT | 9 | 9 | AY.2 | 0.003205 |
ORF7a | 116 | L116F | Ctc | Ttc | 9 | 9 | AY.65 | 0.004797 |
ORF7a | 116 | L116L | ctC | ctT | 9 | 9 | AY.74 | 0.001041 |
ORF7a | 116 | L116F | Ctc | Ttc | 9 | 9 | AY.77 | 0.010147 |
ORF7a | 116 | L116F | Ctc | Ttc | 9 | 9 | AZ.2 | 0.007389 |
ORF7a | 116 | L116L | ctC | ctT | 9 | 9 | B.1.1.28 | 0.002801 |
ORF7a | 116 | L116P | cTc | cCc | 9 | 9 | B.1.1.284 | 0.000967 |
ORF7a | 116 | L116L | ctC | ctT | 8 | 9 | B.1.258 | 0.000532 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 9 | B.1.258 | 0.000067 |
ORF7a | 116 | L116F | Ctc | Ttc | 9 | 9 | B.1.36 | 0.001313 |
ORF7a | 116 | L116F | Ctc | Ttc | 9 | 9 | B.1.437 | 0.1875 |
ORF7a | 116 | L116F | Ctc | Ttc | 9 | 9 | B.1.617.1 | 0.001161 |
ORF7a | 116 | L116F | Ctc | Ttc | 8 | 8 | AY.114 | 0.001849 |
ORF7a | 116 | L116del | CTC | --- | 8 | 8 | AY.120 | 0.000297 |
ORF7a | 116 | L116F | Ctc | Ttc | 8 | 8 | AY.120 | 0.000297 |
ORF7a | 116 | L116P | cTc | cCc | 8 | 8 | AY.25 | 0.000048 |
ORF7a | 116 | L116F | Ctc | Ttc | 8 | 8 | AY.46.2 | 0.005083 |
ORF7a | 116 | L116L | ctC | ctT | 8 | 8 | AY.46.6 | 0.000578 |
ORF7a | 116 | L116L | ctC | ctT | 8 | 8 | AY.75.1 | 0.001442 |
ORF7a | 116 | L116F | Ctc | Ttc | 8 | 8 | AY.84 | 0.0035 |
ORF7a | 116 | L116del | CTC | --- | 8 | 8 | AY.91 | 0.005844 |
ORF7a | 116 | L116L | ctC | ctT | 8 | 8 | B.1.1.33 | 0.003367 |
ORF7a | 116 | L116P | cTc | cCc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF7a | 116 | L116L | ctC | ctT | 8 | 8 | B.1.177.35 | 0.005529 |
ORF7a | 116 | L116del | CTC | --- | 8 | 8 | B.1.351 | 0.000238 |
ORF7a | 116 | L116L | ctC | ctT | 8 | 8 | B.1.438.1 | 0.000858 |
ORF7a | 116 | L116L | ctC | ctT | 8 | 8 | B.1.621 | 0.000708 |
ORF7a | 116 | L116L | ctC | ctT | 7 | 8 | D.2 | 0.000525 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 8 | D.2 | 0.000075 |
ORF7a | 116 | L116I | Ctc | Atc | 8 | 8 | P.1.10 | 0.002156 |
ORF7a | 116 | L116F | Ctc | Ttc | 7 | 7 | A.1 | 0.001973 |
ORF7a | 116 | L116F | Ctc | Ttc | 7 | 7 | AY.106 | 0.002344 |
ORF7a | 116 | L116F | Ctc | Ttc | 7 | 7 | AY.121 | 0.000947 |
ORF7a | 116 | L116I | Ctc | Atc | 7 | 7 | AY.43 | 0.000031 |
ORF7a | 116 | L116F | Ctc | Ttc | 7 | 7 | AY.71 | 0.003325 |
ORF7a | 116 | L116F | Ctc | Ttc | 7 | 7 | AY.93 | 0.001912 |
ORF7a | 116 | L116L | ctC | ctT | 7 | 7 | AY.95 | 0.005327 |
ORF7a | 116 | L116del | CTC | --- | 7 | 7 | B.1.1.284 | 0.000752 |
ORF7a | 116 | L116L | ctC | ctT | 7 | 7 | B.1.1.305 | 0.027027 |
ORF7a | 116 | L116L | ctC | ctT | 7 | 7 | B.1.1.306 | 0.003069 |
ORF7a | 116 | L116L | ctC | ctT | 7 | 7 | B.1.1.37 | 0.00135 |
ORF7a | 116 | L116del2 | CTc | --c | 6 | 7 | B.1.1.7 | 0.000005 |
ORF7a | 116 | L116del2 | cTC | c-- | 1 | 7 | B.1.1.7 | 0.000001 |
ORF7a | 116 | L116F | Ctc | Ttc | 7 | 7 | B.1.243 | 0.000487 |
ORF7a | 116 | L116L | ctC | ctT | 7 | 7 | B.1.466.2 | 0.002739 |
ORF7a | 116 | L116L | ctC | ctT | 7 | 7 | B.1.499 | 0.007353 |
ORF7a | 116 | L116F | Ctc | Ttc | 7 | 7 | B.1.635 | 0.122807 |
ORF7a | 116 | L116del | CTC | --- | 6 | 6 | AY.20 | 0.000233 |
ORF7a | 116 | L116V | Ctc | Gtc | 6 | 6 | AY.25 | 0.000036 |
ORF7a | 116 | L116I | Ctc | Atc | 6 | 6 | AY.25 | 0.000036 |
ORF7a | 116 | L116P | cTc | cCc | 6 | 6 | AY.29 | 0.000095 |
ORF7a | 116 | L116L | ctC | ctT | 6 | 6 | AY.29.1 | 0.001323 |
ORF7a | 116 | L116I | CtC | AtT | 3 | 6 | AY.4 | 0.000005 |
ORF7a | 116 | L116I | Ctc | Atc | 3 | 6 | AY.4 | 0.000005 |
ORF7a | 116 | L116L | ctC | ctT | 6 | 6 | AY.46 | 0.000624 |
ORF7a | 116 | L116F | Ctc | Ttc | 6 | 6 | AY.60 | 0.005629 |
ORF7a | 116 | L116F | Ctc | Ttc | 6 | 6 | AY.7.2 | 0.003356 |
ORF7a | 116 | L116L | ctC | ctT | 5 | 6 | AY.75 | 0.00028 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 6 | AY.75 | 0.000056 |
ORF7a | 116 | L116R | cTc | cGc | 6 | 6 | AY.84 | 0.002625 |
ORF7a | 116 | L116F | Ctc | Ttc | 6 | 6 | AY.88 | 0.005305 |
ORF7a | 116 | L116L | ctC | ctT | 6 | 6 | AY.9 | 0.000406 |
ORF7a | 116 | L116L | ctC | ctT | 6 | 6 | B.1.1.284 | 0.000644 |
ORF7a | 116 | L116L | ctC | ctT | 6 | 6 | B.1.160 | 0.000187 |
ORF7a | 116 | L116L | ctC | ctT | 6 | 6 | B.1.160.17 | 0.010204 |
ORF7a | 116 | L116L | ctC | ctT | 6 | 6 | B.1.177.7 | 0.000989 |
ORF7a | 116 | L116P | cTc | cCc | 6 | 6 | B.1.2 | 0.000053 |
ORF7a | 116 | L116F | Ctc | Ttc | 6 | 6 | B.1.221.4 | 0.025 |
ORF7a | 116 | L116L | ctC | ctT | 6 | 6 | B.1.258.22 | 0.016 |
ORF7a | 116 | L116del | CTC | --- | 6 | 6 | B.1.429 | 0.000141 |
ORF7a | 116 | L116F | Ctc | Ttc | 6 | 6 | B.1.623 | 0.003219 |
ORF7a | 116 | L116L | ctC | ctT | 6 | 6 | C.26 | 0.044118 |
ORF7a | 116 | L116del | CTC | --- | 6 | 6 | C.37 | 0.000696 |
ORF7a | 116 | L116del | CTC | --- | 6 | 6 | D.2 | 0.00045 |
ORF7a | 116 | L116F | Ctc | Ttc | 6 | 6 | P.1.14 | 0.000287 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | A | 0.001935 |
ORF7a | 116 | L116S | CTc | TCc | 4 | 5 | All | 0.000001 |
ORF7a | 116 | L116S | CTc | AGc | 1 | 5 | All | 0 |
ORF7a | 116 | L116L | ctC | ctT | 5 | 5 | AY.110 | 0.000563 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | AY.116 | 0.001434 |
ORF7a | 116 | L116del | CTC | --- | 5 | 5 | AY.4.2 | 0.000108 |
ORF7a | 116 | L116del1 | ctC | ct- | 4 | 5 | AY.43 | 0.000018 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 5 | AY.43 | 0.000004 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | AY.46.4 | 0.000823 |
ORF7a | 116 | L116del | CTC | --- | 5 | 5 | AY.46.6 | 0.000361 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | AY.5 | 0.000103 |
ORF7a | 116 | L116del2 | CTc | --c | 5 | 5 | AY.54 | 0.000477 |
ORF7a | 116 | L116L | ctC | ctG | 2 | 5 | AY.6 | 0.000082 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 5 | AY.6 | 0.000082 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 5 | AY.6 | 0.000041 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | AY.74 | 0.000578 |
ORF7a | 116 | L116del | CTC | --- | 5 | 5 | AY.79 | 0.006053 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | AY.87 | 0.004163 |
ORF7a | 116 | L116L | ctC | ctT | 5 | 5 | AY.99.2 | 0.000461 |
ORF7a | 116 | L116R | cTc | cGc | 5 | 5 | B.1 | 0.000046 |
ORF7a | 116 | L116I | Ctc | Atc | 5 | 5 | B.1.1 | 0.000091 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | B.1.1.1 | 0.001633 |
ORF7a | 116 | L116L | ctC | ctT | 5 | 5 | B.1.1.157 | 0.004566 |
ORF7a | 116 | L116L | ctC | ctT | 5 | 5 | B.1.1.176 | 0.002197 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | B.1.1.312 | 0.00956 |
ORF7a | 116 | L116del | CTC | --- | 5 | 5 | B.1.1.318 | 0.001509 |
ORF7a | 116 | L116L | ctC | ctT | 5 | 5 | B.1.1.349 | 0.051546 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | B.1.177.73 | 0.002831 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | B.1.258 | 0.000333 |
ORF7a | 116 | L116del | CTC | --- | 5 | 5 | B.1.258.17 | 0.00052 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | B.1.258.17 | 0.00052 |
ORF7a | 116 | L116L | ctC | ctA | 3 | 5 | B.1.258.17 | 0.000312 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 5 | B.1.258.17 | 0.000208 |
ORF7a | 116 | L116L | ctC | ctT | 5 | 5 | B.1.575 | 0.001517 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | B.1.618 | 0.020161 |
ORF7a | 116 | L116del | CTC | --- | 5 | 5 | B.1.621 | 0.000443 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | C.37 | 0.00058 |
ORF7a | 116 | L116del | CTC | --- | 5 | 5 | P.1.7 | 0.001596 |
ORF7a | 116 | L116del | CTC | --- | 5 | 5 | P.2 | 0.000933 |
ORF7a | 116 | L116F | Ctc | Ttc | 5 | 5 | P.2 | 0.000933 |
ORF7a | 116 | L116L | ctC | ctT | 4 | 4 | A.1 | 0.001127 |
ORF7a | 116 | L116Q | cTC | cAA | 4 | 4 | All | 0.000001 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.1 | 0.001583 |
ORF7a | 116 | L116L | ctC | ctT | 4 | 4 | AY.10 | 0.00212 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.101 | 0.001962 |
ORF7a | 116 | L116I | Ctc | Atc | 4 | 4 | AY.103 | 0.000025 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | AY.114 | 0.000924 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | AY.118 | 0.000251 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.12 | 0.001264 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | AY.120.1 | 0.001284 |
ORF7a | 116 | L116del2 | CTc | --c | 4 | 4 | AY.14 | 0.000352 |
ORF7a | 116 | L116del2 | CTc | --c | 4 | 4 | AY.20 | 0.000155 |
ORF7a | 116 | L116del2 | cTC | c-- | 3 | 4 | AY.25 | 0.000018 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 4 | AY.25 | 0.000006 |
ORF7a | 116 | L116I | Ctc | Atc | 4 | 4 | AY.3 | 0.00004 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.32 | 0.00213 |
ORF7a | 116 | L116L | ctC | ctT | 4 | 4 | AY.32 | 0.00213 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.34 | 0.000388 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF7a | 116 | L116P | cTc | cCc | 4 | 4 | AY.45 | 0.000487 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.46.6 | 0.000289 |
ORF7a | 116 | L116V | Ctc | Gtc | 4 | 4 | AY.53 | 0.00115 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.72 | 0.005442 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | AY.75 | 0.000224 |
ORF7a | 116 | L116del2 | CTc | --c | 4 | 4 | AY.8 | 0.002424 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | AY.81 | 0.007968 |
ORF7a | 116 | L116P | cTc | cCc | 4 | 4 | B.1 | 0.000037 |
ORF7a | 116 | L116L | ctC | ctT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | B.1.160 | 0.000125 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | B.1.177.7 | 0.000659 |
ORF7a | 116 | L116L | ctC | ctT | 4 | 4 | B.1.232 | 0.002149 |
ORF7a | 116 | L116F | Ctc | Ttc | 4 | 4 | B.1.234 | 0.000528 |
ORF7a | 116 | L116L | ctC | ctT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF7a | 116 | L116L | ctC | ctT | 4 | 4 | B.1.369 | 0.001141 |
ORF7a | 116 | L116del1 | ctC | ct- | 2 | 4 | B.1.617.2 | 0.000008 |
ORF7a | 116 | L116del1 | CtC | -tT | 1 | 4 | B.1.617.2 | 0.000004 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 4 | B.1.617.2 | 0.000004 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | B.1.628 | 0.001409 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | N.7 | 0.117647 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | P.1.14 | 0.000191 |
ORF7a | 116 | L116L | ctC | ctT | 4 | 4 | P.1.17 | 0.000647 |
ORF7a | 116 | L116L | ctC | ctT | 4 | 4 | Q.4 | 0.001819 |
ORF7a | 116 | L116del | CTC | --- | 4 | 4 | Q.8 | 0.00066 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | A.2.5 | 0.001497 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | A.2.5 | 0.001497 |
ORF7a | 116 | L116I | Ctc | Atc | 3 | 3 | A.2.5 | 0.001497 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | A.23.1 | 0.002113 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | A.23.1 | 0.002113 |
ORF7a | 116 | L116N | CTc | AAc | 3 | 3 | All | 0.000001 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | AY.104 | 0.005952 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | AY.105 | 0.001929 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | AY.107 | 0.001398 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | AY.108 | 0.003308 |
ORF7a | 116 | L116I | Ctc | Atc | 3 | 3 | AY.116.1 | 0.000934 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 116 | L116del1 | ctC | ct- | 2 | 3 | AY.25 | 0.000012 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 3 | AY.25 | 0.000006 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | AY.38 | 0.001498 |
ORF7a | 116 | L116V | Ctc | Gtc | 3 | 3 | AY.39 | 0.000074 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | AY.47 | 0.000093 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | AY.5 | 0.000062 |
ORF7a | 116 | L116P | cTc | cCc | 3 | 3 | AY.5 | 0.000062 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | AY.59 | 0.001589 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | AY.6 | 0.000123 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | AY.7.2 | 0.001678 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | AY.85 | 0.001282 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | AY.94 | 0.001328 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | AY.95 | 0.002283 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | AY.99.1 | 0.004658 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B | 0.000383 |
ORF7a | 116 | L116I | Ctc | Atc | 3 | 3 | B.1 | 0.000027 |
ORF7a | 116 | L116P | cTc | cCc | 3 | 3 | B.1.1.1 | 0.00098 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.1.222 | 0.000612 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.1.284 | 0.000322 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.1.329 | 0.011538 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.1.344 | 0.032258 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.1.432 | 0.003797 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | B.1.1.58 | 0.016129 |
ORF7a | 116 | L116del1 | Ctc | -tc | 2 | 3 | B.1.13 | 0.004751 |
ORF7a | 116 | L116del1 | CtC | -tN | 1 | 3 | B.1.13 | 0.002375 |
ORF7a | 116 | L116I | Ctc | Atc | 3 | 3 | B.1.177 | 0.00004 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.177.17 | 0.002463 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.177.57 | 0.000843 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.177.6 | 0.00293 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | B.1.221 | 0.000213 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.240 | 0.000647 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.258.14 | 0.002941 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.326 | 0.022727 |
ORF7a | 116 | L116I | Ctc | Atc | 3 | 3 | B.1.332 | 0.01049 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | B.1.351.2 | 0.000908 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | B.1.36 | 0.000438 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.36.1 | 0.003421 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.36.31 | 0.005254 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.361 | 0.003866 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.375 | 0.002459 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.375 | 0.002459 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | B.1.389 | 0.003006 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.399 | 0.005803 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.420 | 0.03125 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.466.2 | 0.001174 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.525 | 0.000339 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.565 | 0.002431 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | B.1.575 | 0.00091 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | B.1.619.1 | 0.001924 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 116 | L116del1 | ctC | ct- | 3 | 3 | B.1.628 | 0.001057 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | B.1.634 | 0.010274 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | P.1.12 | 0.001452 |
ORF7a | 116 | L116L | ctC | ctT | 3 | 3 | P.1.12 | 0.001452 |
ORF7a | 116 | L116F | Ctc | Ttc | 3 | 3 | P.1.15 | 0.000697 |
ORF7a | 116 | L116del | CTC | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF7a | 116 | L116del2 | CTC | --N | 2 | 3 | Q.3 | 0.00029 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 3 | Q.3 | 0.000145 |
ORF7a | 116 | L116I | Ctc | Atc | 2 | 2 | 0.111111 | |
ORF7a | 116 | L116H | cTc | cAc | 2 | 2 | 0.111111 | |
ORF7a | 116 | L116N | CTc | AAc | 2 | 2 | 0.111111 | |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 2 | 0.055556 | |
ORF7a | 116 | L116F | CtC | TtT | 1 | 2 | 0.055556 | |
ORF7a | 116 | L116del2 | CTc | --c | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 116 | L116P | cTc | cCc | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | AA.5 | 0.032258 |
ORF7a | 116 | L116L | ctC | ctA | 2 | 2 | AE.1 | 0.022727 |
ORF7a | 116 | L116P | cTc | cCc | 2 | 2 | AE.8 | 0.000978 |
ORF7a | 116 | L116T | CTc | ACc | 2 | 2 | All | 0 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | AY.1 | 0.000791 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 116 | L116I | Ctc | Atc | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.109 | 0.001479 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.111 | 0.000366 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.116 | 0.000574 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 116 | L116I | Ctc | Atc | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 116 | L116R | cTc | cGc | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.120.1 | 0.000642 |
ORF7a | 116 | L116S | CTc | TCc | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 116 | L116L | CtC | TtA | 2 | 2 | AY.16 | 0.000759 |
ORF7a | 116 | L116del2 | CTc | --c | 2 | 2 | AY.16.1 | 0.00094 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.22 | 0.004184 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.23 | 0.000139 |
ORF7a | 116 | L116H | cTc | cAc | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 116 | L116del2 | CTc | --c | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 116 | L116P | cTc | cCc | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 116 | L116V | Ctc | Gtc | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 116 | L116R | cTc | cGc | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.3.1 | 0.000171 |
ORF7a | 116 | L116del1 | ctC | ct- | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 116 | L116I | Ctc | Atc | 2 | 2 | AY.39.1 | 0.000079 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | AY.4.5 | 0.000215 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.46.1 | 0.002053 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.46.5 | 0.000397 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.5.3 | 0.000675 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | AY.5.4 | 0.000553 |
ORF7a | 116 | L116I | Ctc | Atc | 2 | 2 | AY.57 | 0.001312 |
ORF7a | 116 | L116P | cTc | cCc | 2 | 2 | AY.61 | 0.00021 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.63 | 0.000774 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | AY.67 | 0.000929 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | AY.69 | 0.000373 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.7 | 0.000392 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.72 | 0.002721 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.80 | 0.002257 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | AY.86 | 0.00166 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 116 | L116H | cTc | cAc | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | AY.91 | 0.001461 |
ORF7a | 116 | L116R | cTc | cGc | 2 | 2 | AY.92 | 0.000575 |
ORF7a | 116 | L116P | cTc | cCc | 2 | 2 | AY.98 | 0.000158 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B | 0.000256 |
ORF7a | 116 | L116P | cTc | cCc | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.1.155 | 0.142857 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.1.176 | 0.000879 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.232 | 0.00363 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.1.263 | 0.003115 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.1.28 | 0.000622 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.322 | 0.017544 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.1.370 | 0.025316 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.41 | 0.012658 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.1.8 | 0.007168 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.127 | 0.004396 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.160.16 | 0.001859 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.177.24 | 0.002591 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.177.4 | 0.000422 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.177.57 | 0.000562 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.177.77 | 0.001452 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.240 | 0.000431 |
ORF7a | 116 | L116V | Ctc | Gtc | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.3 | 0.005236 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.320 | 0.002491 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.320 | 0.002491 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.324 | 0.00321 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.36.8 | 0.002 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.422 | 0.001625 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.466.1 | 0.014388 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.469 | 0.00722 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.517 | 0.000854 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.561 | 0.000794 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.564 | 0.000852 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.589 | 0.015152 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.595 | 0.000522 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.612 | 0.005305 |
ORF7a | 116 | L116del1 | Ctc | -tc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 116 | L116R | cTc | cGc | 2 | 2 | B.1.617.3 | 0.00597 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 2 | B.6.6 | 0.000889 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 2 | B.6.6 | 0.000889 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | D.2 | 0.00015 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | P.1.10 | 0.000539 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | P.1.17 | 0.000324 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | P.1.7 | 0.000639 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | Q.1 | 0.000253 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | Q.8 | 0.00033 |
ORF7a | 116 | L116L | ctC | ctT | 2 | 2 | R.1 | 0.00018 |
ORF7a | 116 | L116del | CTC | --- | 2 | 2 | R.1 | 0.00018 |
ORF7a | 116 | L116F | Ctc | Ttc | 2 | 2 | R.1 | 0.00018 |
ORF7a | 116 | L116del1 | ctC | ct- | 2 | 2 | R.1 | 0.00018 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | 0.055556 | |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | A | 0.000387 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | A | 0.000387 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | A.1 | 0.000282 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 116 | L116Y | CTc | TAc | 1 | 1 | A.1 | 0.000282 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | A.2.4 | 0.003367 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | A.2.4 | 0.003367 |
ORF7a | 116 | L116S | CTc | AGc | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | A.21 | 0.00277 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | A.23 | 0.010526 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | A.28 | 0.002646 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AB.1 | 0.008197 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AD.2 | 0.000219 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AE.1 | 0.011364 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 1 | AE.8 | 0.000489 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AH.3 | 0.003802 |
ORF7a | 116 | L116A | CTC | GCA | 1 | 1 | All | 0 |
ORF7a | 116 | L116Y | CTc | TAc | 1 | 1 | All | 0 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AU.1 | 0.001266 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.10 | 0.00053 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 116 | L116del1 | ctC | ct- | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 116 | L116H | cTc | cAc | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 116 | L116del2 | cTC | c-- | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 116 | L116Q | cTC | cAA | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 1 | AY.106 | 0.000335 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.11 | 0.001339 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | AY.11 | 0.001339 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.120.2 | 0.001285 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 116 | L116L | CtC | TtA | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 116 | L116del1 | ctC | ct- | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.21 | 0.001898 |
ORF7a | 116 | L116S | CTc | TCc | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 1 | AY.28 | 0.00189 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | AY.35 | 0.000233 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 116 | L116del1 | cTc | c-c | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.39.2 | 0.001541 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 116 | L116H | cTc | cAc | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.4.4 | 0.000409 |
ORF7a | 116 | L116del1 | cTc | c-c | 1 | 1 | AY.4.4 | 0.000409 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 116 | L116del2 | cTC | c-- | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 116 | L116H | cTc | cAc | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 116 | L116S | CTc | TCc | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.46.3 | 0.000934 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.48 | 0.000465 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.49 | 0.003195 |
ORF7a | 116 | L116del1 | ctC | ct- | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.63 | 0.000387 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.64 | 0.000595 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 116 | L116del1 | CtC | -tT | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | AY.72 | 0.001361 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.76 | 0.004831 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.82 | 0.001357 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.82 | 0.001357 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.83 | 0.001724 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.87 | 0.000833 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 116 | L116H | cTc | cAc | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 116 | L116Q | cTC | cAA | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.90 | 0.000684 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.90 | 0.000684 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.92 | 0.000287 |
ORF7a | 116 | L116del1 | cTc | c-c | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AY.96 | 0.002075 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | AY.97 | 0.001701 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 116 | L116L | CtC | TtA | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B | 0.000128 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | B.1 | 0.000009 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.1.121 | 0.002427 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.13 | 0.035714 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.134 | 0.011364 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.168 | 0.026316 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF7a | 116 | L116del1 | ctC | ct- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.219 | 0.005 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.1.273 | 0.006757 |
ORF7a | 116 | L116del1 | ctC | ct- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.1.280 | 0.003086 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF7a | 116 | L116N | CTc | AAc | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.1.331 | 0.011628 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | B.1.1.388 | 0.045455 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.1.411 | 0.014706 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.1.437 | 0.010417 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.1.448 | 0.002033 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.1.45 | 0.014085 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.453 | 0.008475 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.110 | 0.004525 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.111 | 0.001175 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.118 | 0.006711 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.126 | 0.001276 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.128 | 0.000635 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.128 | 0.000635 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.143 | 0.021277 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.147 | 0.000756 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.147 | 0.000756 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.157 | 0.002985 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.160.22 | 0.006757 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 116 | L116H | cTc | cAc | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.177.16 | 0.000664 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | B.1.177.53 | 0.002392 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.177.53 | 0.002392 |
ORF7a | 116 | L116A | CTC | GCA | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.177.80 | 0.001912 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 1 | B.1.177.85 | 0.005435 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.184 | 0.058824 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.195 | 0.005025 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 116 | L116T | CTc | ACc | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 116 | L116H | cTc | cAc | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 116 | L116Q | cTC | cAA | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 116 | L116del2 | CTc | --c | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.203 | 0.0625 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.210 | 0.002132 |
ORF7a | 116 | L116del2 | CTC | --T | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.22 | 0.001318 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.232 | 0.000537 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.232 | 0.000537 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.235 | 0.002519 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.237 | 0.004975 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.258.10 | 0.011364 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.258.24 | 0.010753 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.267 | 0.018519 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.279 | 0.000514 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 1 | B.1.306 | 0.005714 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.329 | 0.000608 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.346 | 0.001311 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.346 | 0.001311 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.36.27 | 0.000763 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.361 | 0.001289 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.367 | 0.000792 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.367 | 0.000792 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | B.1.367 | 0.000792 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.391 | 0.001127 |
ORF7a | 116 | L116H | cTc | cAc | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 116 | L116L | ctC | ctA | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 116 | L116Q | cTC | cAA | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.404 | 0.001302 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.415.1 | 0.007576 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.425 | 0.002994 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.426 | 0.001009 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.428 | 0.00102 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF7a | 116 | L116T | CTc | ACc | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.432 | 0.011236 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.462 | 0.007246 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.493 | 0.025641 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.503 | 0.002488 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.509 | 0.000866 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 116 | L116del1 | Ctc | -tc | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.527 | 0.003704 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.530 | 0.007143 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.530 | 0.007143 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.540 | 0.009709 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.544 | 0.006024 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.558 | 0.004566 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.580 | 0.004065 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.588 | 0.00091 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.590 | 0.004545 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.597 | 0.00463 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.606 | 0.006024 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.612 | 0.002653 |
ORF7a | 116 | L116L | ctC | ctG | 1 | 1 | B.1.612 | 0.002653 |
ORF7a | 116 | L116R | cTC | cGA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 116 | L116L | CtC | TtA | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.618 | 0.004032 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.619 | 0.000871 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.619.1 | 0.000641 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 116 | L116V | Ctc | Gtc | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.76 | 0.011364 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.8 | 0.001972 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.1.93 | 0.000934 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.1.93 | 0.000934 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | B.12 | 0.00641 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.3.1 | 0.001658 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.33 | 0.021277 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.4 | 0.002208 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | B.56 | 0.028571 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | C.1 | 0.002392 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | C.1.1 | 0.076923 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | C.2 | 0.016129 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | C.30 | 0.001727 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | C.36 | 0.000911 |
ORF7a | 116 | L116H | cTc | cAc | 1 | 1 | C.36 | 0.000911 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 116 | L116R | cTc | cGc | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | C.40 | 0.027778 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | C.7 | 0.034483 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | C.9 | 0.030303 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | D.2 | 0.000075 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | N.5 | 0.001767 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | N.6 | 0.007092 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | P.1 | 0.000016 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | P.1.17.1 | 0.000875 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | P.1.2 | 0.001156 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | P.1.5 | 0.076923 |
ORF7a | 116 | L116P | cTc | cCc | 1 | 1 | P.1.6 | 0.001946 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | P.1.7 | 0.000319 |
ORF7a | 116 | L116I | Ctc | Atc | 1 | 1 | P.2 | 0.000187 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | P.3 | 0.001595 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 116 | L116del | CTC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | Q.2 | 0.000613 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | Q.7 | 0.001111 |
ORF7a | 116 | L116L | ctC | ctT | 1 | 1 | Q.7 | 0.001111 |
ORF7a | 116 | L116F | Ctc | Ttc | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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