CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 110 | I110T | nonsyn | aTa | aCa | 3276 | 3275 | 0.999695 | 27721-27723 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 110 | I110T | aTa | aCa | 3275 | 3276 | All | 0.000626 |
ORF7a | 110 | I110T | aTa | aCa | 2412 | 2412 | AY.4 | 0.003754 |
ORF7a | 110 | I110T | aTa | aCa | 92 | 92 | B.1.1.7 | 0.000082 |
ORF7a | 110 | I110T | aTa | aCa | 87 | 87 | B.1.258.17 | 0.009046 |
ORF7a | 110 | I110T | aTa | aCa | 83 | 83 | B.1.617.2 | 0.000313 |
ORF7a | 110 | I110T | aTa | aCa | 63 | 63 | B.1.1.226 | 0.366279 |
ORF7a | 110 | I110T | aTa | aCa | 55 | 55 | AY.46.4 | 0.009048 |
ORF7a | 110 | I110T | aTa | aCa | 49 | 49 | C.35 | 0.037926 |
ORF7a | 110 | I110T | aTa | aCa | 42 | 42 | AY.43 | 0.000186 |
ORF7a | 110 | I110T | aTa | aCa | 33 | 33 | P.1 | 0.00052 |
ORF7a | 110 | I110T | aTa | aCa | 27 | 27 | B.1.1.222 | 0.005508 |
ORF7a | 110 | I110T | aTa | aCa | 21 | 21 | AY.100 | 0.000966 |
ORF7a | 110 | I110T | aTa | aCa | 20 | 20 | B.1 | 0.000183 |
ORF7a | 110 | I110T | aTa | aCa | 20 | 20 | B.1.1.519 | 0.000794 |
ORF7a | 110 | I110T | aTa | aCa | 18 | 18 | AY.102 | 0.000477 |
ORF7a | 110 | I110T | aTa | aCa | 13 | 13 | AY.3 | 0.000129 |
ORF7a | 110 | I110T | aTa | aCa | 13 | 13 | B.1.2 | 0.000114 |
ORF7a | 110 | I110T | aTa | aCa | 11 | 11 | AY.44 | 0.000067 |
ORF7a | 110 | I110T | aTa | aCa | 10 | 10 | AY.25 | 0.00006 |
ORF7a | 110 | I110T | aTa | aCa | 10 | 10 | AY.9.2 | 0.000367 |
ORF7a | 110 | I110T | aTa | aCa | 9 | 9 | B.1.177 | 0.000119 |
ORF7a | 110 | I110T | aTa | aCa | 8 | 8 | AY.103 | 0.00005 |
ORF7a | 110 | I110T | aTa | aCa | 8 | 8 | AY.99.1 | 0.012422 |
ORF7a | 110 | I110T | aTa | aCa | 7 | 7 | AY.42 | 0.000282 |
ORF7a | 110 | I110T | aTa | aCa | 6 | 6 | B.1.429 | 0.000141 |
ORF7a | 110 | I110T | aTa | aCa | 6 | 6 | B.1.617.1 | 0.000774 |
ORF7a | 110 | I110T | aTa | aCa | 6 | 6 | B.1.637 | 0.000438 |
ORF7a | 110 | I110T | aTa | aCa | 5 | 5 | AY.20 | 0.000194 |
ORF7a | 110 | I110T | aTa | aCa | 5 | 5 | AY.33 | 0.000334 |
ORF7a | 110 | I110T | aTa | aCa | 5 | 5 | AY.47 | 0.000156 |
ORF7a | 110 | I110T | aTa | aCa | 5 | 5 | AY.5 | 0.000103 |
ORF7a | 110 | I110T | aTa | aCa | 5 | 5 | B.1.351 | 0.000149 |
ORF7a | 110 | I110T | aTa | aCa | 4 | 4 | A.1 | 0.001127 |
ORF7a | 110 | I110T | aTa | aCa | 4 | 4 | AY.121 | 0.000541 |
ORF7a | 110 | I110T | aTa | aCa | 4 | 4 | AY.4.3 | 0.003367 |
ORF7a | 110 | I110T | aTa | aCa | 4 | 4 | B.1.1 | 0.000073 |
ORF7a | 110 | I110T | aTa | aCa | 4 | 4 | B.1.526 | 0.000094 |
ORF7a | 110 | I110T | aTa | aCa | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 110 | I110T | aTa | aCa | 3 | 3 | AY.120 | 0.000112 |
ORF7a | 110 | I110T | aTa | aCa | 3 | 3 | AY.29 | 0.000047 |
ORF7a | 110 | I110T | aTa | aCa | 3 | 3 | AY.39.1 | 0.000119 |
ORF7a | 110 | I110T | aTa | aCa | 3 | 3 | B.1.1.214 | 0.000166 |
ORF7a | 110 | I110T | aTa | aCa | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 110 | I110T | aTa | aCa | 3 | 3 | B.1.177.60 | 0.000655 |
ORF7a | 110 | I110T | aTa | aCa | 3 | 3 | B.1.36.29 | 0.001552 |
ORF7a | 110 | I110T | aTa | aCa | 3 | 3 | C.37 | 0.000348 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | AY.62 | 0.000871 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | AY.69 | 0.000373 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | AY.77 | 0.002255 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | B.1.1.397 | 0.004505 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | B.1.160.8 | 0.002577 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | B.1.36.22 | 0.002415 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | B.1.36.31 | 0.003503 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | B.1.361 | 0.002577 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7a | 110 | I110T | aTa | aCa | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AM.4 | 0.003571 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.46.1 | 0.001027 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.48 | 0.000465 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B | 0.000128 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.1.279 | 0.001121 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.1.303 | 0.002762 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.1.349 | 0.010309 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.1.517 | 0.006803 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.111 | 0.001175 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.177.69 | 0.001484 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.210 | 0.002132 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.298 | 0.002114 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.335 | 0.010309 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.413 | 0.004255 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.448 | 0.002625 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.523 | 0.002451 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | B.40 | 0.000364 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | D.2 | 0.000075 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 110 | I110T | aTa | aCa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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