CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 110

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a110I110deldelATA---44384438127721-27723
ORF7a110I110TnonsynaTaaCa327632750.99969527721-27723
ORF7a110I110TnonsynaTAaCC327610.0003052527721-27723
ORF7a110I110del1delAta-ta131613030.99012227721-27723
ORF7a110I110del1delatAat-131690.0068389127721-27723
ORF7a110I110del1delAtA-tN131620.0015197627721-27723
ORF7a110I110del1delATA-NN131610.00075987827721-27723
ORF7a110I110del1delAtA-tG131610.00075987827721-27723
ORF7a110I110VnonsynAtaGta9719700.9989727721-27723
ORF7a110I110VnonsynAtAGtT97110.0010298727721-27723
ORF7a110I110IsynatAatT4123890.94417527721-27723
ORF7a110I110IsynatAatC412230.055825227721-27723
ORF7a110I110LnonsynAtaTta82670.81707327721-27723
ORF7a110I110LnonsynAtaCta82110.13414627721-27723
ORF7a110I110LnonsynAtACtC8240.048780527721-27723
ORF7a110I110MnonsynatAatG5555127721-27723
ORF7a110I110del2delaTAa--25130.5227721-27723
ORF7a110I110del2delATa--a25110.4427721-27723
ORF7a110I110del2delATA--N2510.0427721-27723
ORF7a110I110KnonsynaTaaAa1010127721-27723
ORF7a110I110RnonsynaTaaGa66127721-27723
ORF7a110I110FnonsynAtATtT33127721-27723
ORF7a110I110NnonsynaTAaAC320.66666727721-27723
ORF7a110I110NnonsynaTAaAT310.33333327721-27723
ORF7a110I110DnonsynATAGAT22127721-27723
ORF7a110I110AnonsynATaGCa22127721-27723
ORF7a110I110HnonsynATACAC22127721-27723
ORF7a110I110QnonsynATaCAa22127721-27723
ORF7a110I110XnonsynATaTAa22127721-27723
ORF7a110I110SnonsynATATCG11127721-27723
ORF7a110I110YnonsynATATAT11127721-27723
ORF7a110I110GnonsynATAGGT11127721-27723

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a110I110delATA---44384438All0.000849
ORF7a110I110TaTaaCa32753276All0.000626
ORF7a110I110TaTAaCC13276All0
ORF7a110I110TaTaaCa24122412AY.40.003754
ORF7a110I110del1Ata-ta13031316All0.000249
ORF7a110I110del1atAat-91316All0.000002
ORF7a110I110del1AtA-tN21316All0
ORF7a110I110del1AtA-tG11316All0
ORF7a110I110del1ATA-NN11316All0
ORF7a110I110delATA---12601260B.1.1.70.001128
ORF7a110I110VAtaGta970971All0.000186
ORF7a110I110VAtAGtT1971All0
ORF7a110I110delATA---511511AY.40.000795
ORF7a110I110IatAatT389412All0.000074
ORF7a110I110IatAatC23412All0.000004
ORF7a110I110del1Ata-ta394394AY.40.000613
ORF7a110I110IatAatT344344AY.1010.16871
ORF7a110I110VAtaGta314314B.1.6250.738824
ORF7a110I110delATA---269269AY.250.001618
ORF7a110I110delATA---183183AY.830.315517
ORF7a110I110VAtaGta169169AY.440.001029
ORF7a110I110delATA---156156B.1.617.20.000587
ORF7a110I110del1Ata-ta126126B.1.1.70.000113
ORF7a110I110VAtaGta115115AY.30.001144
ORF7a110I110delATA---111111AY.440.000676
ORF7a110I110delATA---109109AY.1030.000677
ORF7a110I110delATA---105105AY.30.001044
ORF7a110I110delATA---104104AY.290.00164
ORF7a110I110delATA---103103AY.330.006878
ORF7a110I110TaTaaCa9292B.1.1.70.000082
ORF7a110I110TaTaaCa8787B.1.258.170.009046
ORF7a110I110delATA---8484AY.430.000372
ORF7a110I110TaTaaCa8383B.1.617.20.000313
ORF7a110I110LAtaTta6782All0.000013
ORF7a110I110LAtaCta1182All0.000002
ORF7a110I110LAtACtC482All0.000001
ORF7a110I110del1Ata-ta8282AY.1030.000509
ORF7a110I110del1Ata-ta8080B.1.617.20.000301
ORF7a110I110delATA---7676B.1.36.180.031933
ORF7a110I110del1Ata-ta7072AY.250.000421
ORF7a110I110del1AtA-tN172AY.250.000006
ORF7a110I110del1atAat-172AY.250.000006
ORF7a110I110delATA---6767AY.60.002756
ORF7a110I110TaTaaCa6363B.1.1.2260.366279
ORF7a110I110del1Ata-ta6262AY.440.000377
ORF7a110I110delATA---6161P.10.000961
ORF7a110I110delATA---5959AY.260.00167
ORF7a110I110VAtaGta5959AY.40.000092
ORF7a110I110delATA---5858AY.460.006037
ORF7a110I110MatAatG5555All0.000011
ORF7a110I110TaTaaCa5555AY.46.40.009048
ORF7a110I110delATA---5252AY.420.002092
ORF7a110I110delATA---5252B.1.1.5190.002065
ORF7a110I110TaTaaCa4949C.350.037926
ORF7a110I110delATA---4646B.10.000421
ORF7a110I110delATA---4444B.1.20.000387
ORF7a110I110TaTaaCa4242AY.430.000186
ORF7a110I110del1Ata-ta3838AY.50.000785
ORF7a110I110VAtaGta3838B.1.1.70.000034
ORF7a110I110delATA---3838B.1.1770.0005
ORF7a110I110delATA---3737B.1.5260.00087
ORF7a110I110delATA---3434AY.740.003932
ORF7a110I110del1Ata-ta3333AY.430.000146
ORF7a110I110TaTaaCa3333P.10.00052
ORF7a110I110delATA---3232AY.70.006272
ORF7a110I110delATA---2929AY.390.000717
ORF7a110I110VAtaGta2929B.1.617.20.000109
ORF7a110I110TaTaaCa2727B.1.1.2220.005508
ORF7a110I110del2aTAa--1325All0.000002
ORF7a110I110del2ATa--a1125All0.000002
ORF7a110I110del2ATA--N125All0
ORF7a110I110delATA---2424AY.1020.000636
ORF7a110I110delATA---2424B.1.10.000435
ORF7a110I110MatAatG2323B.1.1.70.000021
ORF7a110I110del1Ata-ta2223B.1.5260.000517
ORF7a110I110del1AtA-tG123B.1.5260.000024
ORF7a110I110del1Ata-ta2122AY.30.000209
ORF7a110I110del1ATA-NN122AY.30.00001
ORF7a110I110del2ATa--a1122B.1.1.70.00001
ORF7a110I110del2aTAa--1122B.1.1.70.00001
ORF7a110I110TaTaaCa2121AY.1000.000966
ORF7a110I110delATA---2121AY.530.006038
ORF7a110I110VAtaGta2121B.10.000192
ORF7a110I110del1Ata-ta2121B.1.20.000185
ORF7a110I110TaTaaCa2020B.10.000183
ORF7a110I110TaTaaCa2020B.1.1.5190.000794
ORF7a110I110delATA---2020B.1.3700.16
ORF7a110I110VAtaGta1919AY.430.000084
ORF7a110I110delATA---1919B.1.1.2140.001054
ORF7a110I110VAtaGta1919B.1.36.360.011439
ORF7a110I110TaTaaCa1818AY.1020.000477
ORF7a110I110delATA---1818AY.1130.002563
ORF7a110I110del1Ata-ta1818AY.4.20.00039
ORF7a110I110del1Ata-ta1818AY.4.40.007365
ORF7a110I110del1Ata-ta1717AY.46.50.003373
ORF7a110I110delATA---1717AY.470.000529
ORF7a110I110del1Ata-ta1717AY.98.10.000823
ORF7a110I110delATA---1717B.1.4270.000858
ORF7a110I110delATA---1616AY.90.001082
ORF7a110I110VAtaGta1515AY.1030.000093
ORF7a110I110VAtaGta1515B.1.1.3330.016146
ORF7a110I110delATA---1515B.1.2340.001979
ORF7a110I110delATA---1414AY.1180.000877
ORF7a110I110delATA---1414AY.1210.001894
ORF7a110I110del1Ata-ta1414AY.470.000435
ORF7a110I110delATA---1414B.1.1.370.0027
ORF7a110I110del1Ata-ta1313AY.1130.001851
ORF7a110I110TaTaaCa1313AY.30.000129
ORF7a110I110delATA---1313AY.46.60.000939
ORF7a110I110delATA---1313AY.50.000268
ORF7a110I110delATA---1313AY.750.000728
ORF7a110I110LAtaTta1013B.1.1.70.000009
ORF7a110I110LAtaCta313B.1.1.70.000003
ORF7a110I110TaTaaCa1313B.1.20.000114
ORF7a110I110delATA---1212AY.140.001056
ORF7a110I110del1Ata-ta1212AY.390.000297
ORF7a110I110delATA---1212B.1.3510.000357
ORF7a110I110MatAatG1111AY.1030.000068
ORF7a110I110delATA---1111AY.1200.000409
ORF7a110I110del1Ata-ta1111AY.1200.000409
ORF7a110I110VAtaGta1111AY.390.000272
ORF7a110I110TaTaaCa1111AY.440.000067
ORF7a110I110delATA---1111D.20.000825
ORF7a110I110KaTaaAa1010All0.000002
ORF7a110I110delATA---1010AY.1190.000353
ORF7a110I110TaTaaCa1010AY.250.00006
ORF7a110I110VAtaGta1010AY.250.00006
ORF7a110I110del1Ata-ta1010AY.460.001041
ORF7a110I110TaTaaCa1010AY.9.20.000367
ORF7a110I110delATA---1010B.1.4290.000235
ORF7a110I110del1Ata-ta1010P.10.000158
ORF7a110I110del1Ata-ta99AY.1190.000318
ORF7a110I110del1Ata-ta99AY.260.000255
ORF7a110I110VAtaGta99AY.290.000142
ORF7a110I110delATA---99AY.540.000858
ORF7a110I110TaTaaCa99B.1.1770.000119
ORF7a110I110del1Ata-ta88AY.1020.000212
ORF7a110I110TaTaaCa88AY.1030.00005
ORF7a110I110delATA---88AY.1050.005145
ORF7a110I110delATA---88AY.1170.000676
ORF7a110I110del1Ata-ta78AY.120.10.002247
ORF7a110I110del1atAat-18AY.120.10.000321
ORF7a110I110VAtaGta88AY.230.000558
ORF7a110I110delATA---88AY.4.20.000174
ORF7a110I110VAtaGta88AY.46.60.000578
ORF7a110I110delATA---88AY.7.20.004474
ORF7a110I110delATA---88AY.910.005844
ORF7a110I110TaTaaCa88AY.99.10.012422
ORF7a110I110LAtaTta88B.10.000073
ORF7a110I110delATA---88B.1.1.2840.000859
ORF7a110I110delATA---88B.1.1600.00025
ORF7a110I110delATA---88B.1.6210.000708
ORF7a110I110del1Ata-ta77AY.290.00011
ORF7a110I110LAtaTta77AY.39.10.000277
ORF7a110I110TaTaaCa77AY.420.000282
ORF7a110I110VAtaGta77B.1.5750.002124
ORF7a110I110IatAatT77B.1.617.20.000026
ORF7a110I110del1Ata-ta77B.1.6370.000512
ORF7a110I110LAtaCta260.111111
ORF7a110I110LAtaTta260.111111
ORF7a110I110LAtACtC260.111111
ORF7a110I110RaTaaGa66All0.000001
ORF7a110I110VAtaGta66AY.100.00318
ORF7a110I110del1Ata-ta66AY.200.000233
ORF7a110I110IatAatT66AY.40.000009
ORF7a110I110TaTaaCa66B.1.4290.000141
ORF7a110I110TaTaaCa66B.1.617.10.000774
ORF7a110I110TaTaaCa66B.1.6370.000438
ORF7a110I110delATA---66C.370.000696
ORF7a110I110IatAatT350.166667
ORF7a110I110IatAatC250.111111
ORF7a110I110delATA---55AY.1000.00023
ORF7a110I110TaTaaCa55AY.200.000194
ORF7a110I110del1Ata-ta55AY.3.10.000426
ORF7a110I110delATA---55AY.3.10.000426
ORF7a110I110TaTaaCa55AY.330.000334
ORF7a110I110del1Ata-ta55AY.39.10.000198
ORF7a110I110delATA---55AY.450.000608
ORF7a110I110TaTaaCa55AY.470.000156
ORF7a110I110TaTaaCa55AY.50.000103
ORF7a110I110delATA---55AY.700.001043
ORF7a110I110delATA---55AY.790.006053
ORF7a110I110delATA---55AY.98.10.000242
ORF7a110I110delATA---55B.1.1.3180.001509
ORF7a110I110del1Ata-ta55B.1.1.3730.119048
ORF7a110I110VAtaGta55B.1.1280.003177
ORF7a110I110delATA---55B.1.2430.000348
ORF7a110I110VAtaGta55B.1.2580.000333
ORF7a110I110delATA---55B.1.258.170.00052
ORF7a110I110TaTaaCa55B.1.3510.000149
ORF7a110I110delATA---55P.1.70.001596
ORF7a110I110delATA---55P.20.000933
ORF7a110I110TaTaaCa44A.10.001127
ORF7a110I110delATA---44AY.1160.001147
ORF7a110I110del1Ata-ta44AY.1180.000251
ORF7a110I110delATA---44AY.120.10.001284
ORF7a110I110TaTaaCa44AY.1210.000541
ORF7a110I110delATA---44AY.230.000279
ORF7a110I110del1Ata-ta44AY.23.10.001669
ORF7a110I110delATA---44AY.270.000259
ORF7a110I110del1Ata-ta44AY.350.000932
ORF7a110I110LAtaTta44AY.40.000006
ORF7a110I110TaTaaCa44AY.4.30.003367
ORF7a110I110delATA---44AY.4.50.00043
ORF7a110I110IatAatT24AY.430.000009
ORF7a110I110IatAatC24AY.430.000009
ORF7a110I110LAtaTta44AY.440.000024
ORF7a110I110del1Ata-ta44AY.46.60.000289
ORF7a110I110VAtaGta44AY.60.000165
ORF7a110I110del1Ata-ta34AY.60.000123
ORF7a110I110del1AtA-tN14AY.60.000041
ORF7a110I110delATA---44AY.600.003752
ORF7a110I110delATA---44AY.80.002424
ORF7a110I110delATA---44AY.9.10.000335
ORF7a110I110del1Ata-ta44AY.920.001149
ORF7a110I110del1Ata-ta44AY.99.20.000369
ORF7a110I110del1Ata-ta44B.10.000037
ORF7a110I110TaTaaCa44B.1.10.000073
ORF7a110I110IatAatC24B.1.10.000036
ORF7a110I110IatAatT24B.1.10.000036
ORF7a110I110del1Ata-ta44B.1.1770.000053
ORF7a110I110VAtaGta44B.1.1770.000053
ORF7a110I110delATA---44B.1.177.70.000659
ORF7a110I110del1Ata-ta44B.1.2340.000528
ORF7a110I110del1Ata-ta44B.1.5250.000453
ORF7a110I110TaTaaCa44B.1.5260.000094
ORF7a110I110delATA---44B.1.5750.001214
ORF7a110I110delATA---44B.1.5950.001044
ORF7a110I110delATA---44B.1.5960.000349
ORF7a110I110delATA---44B.1.621.10.002023
ORF7a110I110delATA---44B.1.6280.001409
ORF7a110I110VAtaGta44C.36.3.10.01087
ORF7a110I110delATA---44N.70.117647
ORF7a110I110VAtaGta44P.10.000063
ORF7a110I110delATA---44P.1.140.000191
ORF7a110I110delATA---44P.1.150.000929
ORF7a110I110delATA---44Q.80.00066
ORF7a110I110KaTaaAa330.166667
ORF7a110I110NaTAaAC230.111111
ORF7a110I110NaTAaAT130.055556
ORF7a110I110FAtATtT33All0.000001
ORF7a110I110NaTAaAC23All0
ORF7a110I110NaTAaAT13All0
ORF7a110I110del1Ata-ta33AY.1000.000138
ORF7a110I110VAtaGta33AY.1020.00008
ORF7a110I110del1Ata-ta33AY.1050.001929
ORF7a110I110del1Ata-ta33AY.1140.000693
ORF7a110I110TaTaaCa33AY.1180.000188
ORF7a110I110TaTaaCa33AY.1200.000112
ORF7a110I110delATA---33AY.130.000483
ORF7a110I110delATA---33AY.200.000117
ORF7a110I110delATA---33AY.240.001293
ORF7a110I110TaTaaCa33AY.290.000047
ORF7a110I110LAtaTta33AY.30.00003
ORF7a110I110delATA---33AY.360.000445
ORF7a110I110TaTaaCa33AY.39.10.000119
ORF7a110I110del1Ata-ta33AY.4.2.10.000447
ORF7a110I110del1Ata-ta33AY.420.000121
ORF7a110I110MatAatG33AY.430.000013
ORF7a110I110LAtaTta23AY.430.000009
ORF7a110I110LAtaCta13AY.430.000004
ORF7a110I110del1Ata-ta33AY.450.000365
ORF7a110I110VAtaGta33AY.450.000365
ORF7a110I110VAtaGta33AY.46.40.000494
ORF7a110I110VAtaGta33AY.470.000093
ORF7a110I110delATA---33AY.5.30.001012
ORF7a110I110delATA---33AY.580.002722
ORF7a110I110delATA---33AY.690.00056
ORF7a110I110delATA---33AY.720.004082
ORF7a110I110delATA---33AY.75.10.000541
ORF7a110I110del1Ata-ta33AY.90.000203
ORF7a110I110delATA---33AY.99.20.000276
ORF7a110I110IatAatT23B.10.000018
ORF7a110I110IatAatC13B.10.000009
ORF7a110I110del1atAat-33B.1.1.10.00098
ORF7a110I110del1Ata-ta33B.1.1.2140.000166
ORF7a110I110TaTaaCa33B.1.1.2140.000166
ORF7a110I110TaTaaCa33B.1.1.250.001706
ORF7a110I110IatAatC33B.1.1.3110.001074
ORF7a110I110delATA---33B.1.1.580.016129
ORF7a110I110RaTaaGa33B.1.1.70.000003
ORF7a110I110IatAatT23B.1.1.70.000002
ORF7a110I110IatAatC13B.1.1.70.000001
ORF7a110I110del1Ata-ta33B.1.110.30.002155
ORF7a110I110delATA---33B.1.130.007126
ORF7a110I110TaTaaCa33B.1.177.600.000655
ORF7a110I110IatAatT33B.1.2060.002447
ORF7a110I110del1Ata-ta33B.1.2430.000209
ORF7a110I110delATA---33B.1.351.20.000908
ORF7a110I110delATA---33B.1.360.000438
ORF7a110I110TaTaaCa33B.1.36.290.001552
ORF7a110I110delATA---33B.1.3890.003006
ORF7a110I110VAtaGta33B.1.438.10.000322
ORF7a110I110delATA---33B.1.5250.000339
ORF7a110I110LAtaTta33B.1.5960.000261
ORF7a110I110delATA---33B.1.617.10.000387
ORF7a110I110VAtaGta33B.1.6210.000266
ORF7a110I110del1Ata-ta33B.1.6210.000266
ORF7a110I110delATA---33B.1.6260.017143
ORF7a110I110TaTaaCa33C.370.000348
ORF7a110I110del1Ata-ta33D.20.000225
ORF7a110I110del1atAat-33P.1.140.000143
ORF7a110I110delATA---33Q.30.000435
ORF7a110I110delATA---33R.10.00027
ORF7a110I110FAtATtT220.111111
ORF7a110I110QATaCAa220.111111
ORF7a110I110delATA---220.111111
ORF7a110I110HATACAC220.111111
ORF7a110I110delATA---22A.2.50.000998
ORF7a110I110delATA---22A.280.005291
ORF7a110I110del1Ata-ta22A.290.010638
ORF7a110I110XATaTAa22All0
ORF7a110I110AATaGCa22All0
ORF7a110I110DATAGAT22All0
ORF7a110I110QATaCAa22All0
ORF7a110I110HATACAC22All0
ORF7a110I110LAtaTta22AY.1020.000053
ORF7a110I110IatAatT22AY.1060.00067
ORF7a110I110delATA---22AY.1080.002205
ORF7a110I110VAtaGta22AY.1090.001479
ORF7a110I110del1Ata-ta22AY.1100.000225
ORF7a110I110delATA---22AY.1100.000225
ORF7a110I110LAtaTta22AY.1180.000125
ORF7a110I110TaTaaCa22AY.1190.000071
ORF7a110I110delATA---22AY.120.000632
ORF7a110I110del1Ata-ta22AY.140.000176
ORF7a110I110delATA---22AY.16.10.00094
ORF7a110I110LAtaTta22AY.250.000012
ORF7a110I110IatAatC22AY.250.000012
ORF7a110I110RaTaaGa22AY.250.000012
ORF7a110I110delATA---22AY.300.000791
ORF7a110I110del1Ata-ta22AY.330.000134
ORF7a110I110delATA---22AY.340.000194
ORF7a110I110del1Ata-ta22AY.340.000194
ORF7a110I110delATA---22AY.380.000999
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ORF7a110I110TaTaaCa22AY.770.002255
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ORF7a110I110TaTaaCa11B.1.1.2790.001121
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ORF7a110I110TaTaaCa11B.1.1.3030.002762
ORF7a110I110LAtaTta11B.1.1.3110.000358
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ORF7a110I110TaTaaCa11B.1.1.3180.000302
ORF7a110I110delATA---11B.1.1.3310.011628
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ORF7a110I110del1Ata-ta11B.1.1.3590.027778
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ORF7a110I110KaTaaAa11B.1.1.3770.001381
ORF7a110I110del1Ata-ta11B.1.1.430.014925
ORF7a110I110delATA---11B.1.1.4340.000349
ORF7a110I110delATA---11B.1.1.4370.010417
ORF7a110I110delATA---11B.1.1.4480.002033
ORF7a110I110VAtaGta11B.1.1.5070.008696
ORF7a110I110TaTaaCa11B.1.1.5170.006803
ORF7a110I110VAtaGta11B.1.1.5190.00004
ORF7a110I110TaTaaCa11B.1.1.5260.003546
ORF7a110I110delATA---11B.1.1.5280.004808
ORF7a110I110delATA---11B.1.1.630.000386
ORF7a110I110KaTaaAa11B.1.1.70.000001
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ORF7a110I110LAtaTta11B.1.1.700.000341
ORF7a110I110VAtaGta11B.1.1050.009615
ORF7a110I110TaTaaCa11B.1.1110.001175
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ORF7a110I110TaTaaCa11B.1.1600.000031
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ORF7a110I110del1Ata-ta11B.1.177.210.000076
ORF7a110I110LAtaTta11B.1.177.230.003236
ORF7a110I110delATA---11B.1.177.440.000519
ORF7a110I110delATA---11B.1.177.500.004695
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ORF7a110I110TaTaaCa11B.1.177.690.001484
ORF7a110I110delATA---11B.1.177.800.001912
ORF7a110I110delATA---11B.1.177.830.001481
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ORF7a110I110LAtaTta11B.1.20.000009
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ORF7a110I110TaTaaCa11B.1.2340.000132
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ORF7a110I110IatAatT11B.1.258.170.000104
ORF7a110I110delATA---11B.1.2650.001271
ORF7a110I110TaTaaCa11B.1.2980.002114
ORF7a110I110delATA---11B.1.3060.005714
ORF7a110I110IatAatT11B.1.3320.003497
ORF7a110I110TaTaaCa11B.1.3350.010309
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ORF7a110I110LAtaCta11B.1.5260.000024
ORF7a110I110VAtaGta11B.1.5260.000024
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ORF7a110I110TaTaaCa11P.1.120.000484
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