CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 110

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	110	I110del		del	ATA	---	4438	4438	1	27721-27723
ORF7a	110	I110T		nonsyn	aTa	aCa	3276	3275	0.999695	27721-27723
ORF7a	110	I110T		nonsyn	aTA	aCC	3276	1	0.00030525	27721-27723
ORF7a	110	I110del1		del	Ata	-ta	1316	1303	0.990122	27721-27723
ORF7a	110	I110del1		del	atA	at-	1316	9	0.00683891	27721-27723
ORF7a	110	I110del1		del	AtA	-tN	1316	2	0.00151976	27721-27723
ORF7a	110	I110del1		del	ATA	-NN	1316	1	0.000759878	27721-27723
ORF7a	110	I110del1		del	AtA	-tG	1316	1	0.000759878	27721-27723
ORF7a	110	I110V		nonsyn	Ata	Gta	971	970	0.99897	27721-27723
ORF7a	110	I110V		nonsyn	AtA	GtT	971	1	0.00102987	27721-27723
ORF7a	110	I110I		syn	atA	atT	412	389	0.944175	27721-27723
ORF7a	110	I110I		syn	atA	atC	412	23	0.0558252	27721-27723
ORF7a	110	I110L		nonsyn	Ata	Tta	82	67	0.817073	27721-27723
ORF7a	110	I110L		nonsyn	Ata	Cta	82	11	0.134146	27721-27723
ORF7a	110	I110L		nonsyn	AtA	CtC	82	4	0.0487805	27721-27723
ORF7a	110	I110M		nonsyn	atA	atG	55	55	1	27721-27723
ORF7a	110	I110del2		del	aTA	a--	25	13	0.52	27721-27723
ORF7a	110	I110del2		del	ATa	--a	25	11	0.44	27721-27723
ORF7a	110	I110del2		del	ATA	--N	25	1	0.04	27721-27723
ORF7a	110	I110K		nonsyn	aTa	aAa	10	10	1	27721-27723
ORF7a	110	I110R		nonsyn	aTa	aGa	6	6	1	27721-27723
ORF7a	110	I110F		nonsyn	AtA	TtT	3	3	1	27721-27723
ORF7a	110	I110N		nonsyn	aTA	aAC	3	2	0.666667	27721-27723
ORF7a	110	I110N		nonsyn	aTA	aAT	3	1	0.333333	27721-27723
ORF7a	110	I110D		nonsyn	ATA	GAT	2	2	1	27721-27723
ORF7a	110	I110A		nonsyn	ATa	GCa	2	2	1	27721-27723
ORF7a	110	I110H		nonsyn	ATA	CAC	2	2	1	27721-27723
ORF7a	110	I110Q		nonsyn	ATa	CAa	2	2	1	27721-27723
ORF7a	110	I110X		nonsyn	ATa	TAa	2	2	1	27721-27723
ORF7a	110	I110S		nonsyn	ATA	TCG	1	1	1	27721-27723
ORF7a	110	I110Y		nonsyn	ATA	TAT	1	1	1	27721-27723
ORF7a	110	I110G		nonsyn	ATA	GGT	1	1	1	27721-27723

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	110	I110del	ATA	---	4438	4438	All	0.000849
ORF7a	110	I110T	aTa	aCa	3275	3276	All	0.000626
ORF7a	110	I110T	aTA	aCC	1	3276	All	0
ORF7a	110	I110T	aTa	aCa	2412	2412	AY.4	0.003754
ORF7a	110	I110del1	Ata	-ta	1303	1316	All	0.000249
ORF7a	110	I110del1	atA	at-	9	1316	All	0.000002
ORF7a	110	I110del1	AtA	-tN	2	1316	All	0
ORF7a	110	I110del1	AtA	-tG	1	1316	All	0
ORF7a	110	I110del1	ATA	-NN	1	1316	All	0
ORF7a	110	I110del	ATA	---	1260	1260	B.1.1.7	0.001128
ORF7a	110	I110V	Ata	Gta	970	971	All	0.000186
ORF7a	110	I110V	AtA	GtT	1	971	All	0
ORF7a	110	I110del	ATA	---	511	511	AY.4	0.000795
ORF7a	110	I110I	atA	atT	389	412	All	0.000074
ORF7a	110	I110I	atA	atC	23	412	All	0.000004
ORF7a	110	I110del1	Ata	-ta	394	394	AY.4	0.000613
ORF7a	110	I110I	atA	atT	344	344	AY.101	0.16871
ORF7a	110	I110V	Ata	Gta	314	314	B.1.625	0.738824
ORF7a	110	I110del	ATA	---	269	269	AY.25	0.001618
ORF7a	110	I110del	ATA	---	183	183	AY.83	0.315517
ORF7a	110	I110V	Ata	Gta	169	169	AY.44	0.001029
ORF7a	110	I110del	ATA	---	156	156	B.1.617.2	0.000587
ORF7a	110	I110del1	Ata	-ta	126	126	B.1.1.7	0.000113
ORF7a	110	I110V	Ata	Gta	115	115	AY.3	0.001144
ORF7a	110	I110del	ATA	---	111	111	AY.44	0.000676
ORF7a	110	I110del	ATA	---	109	109	AY.103	0.000677
ORF7a	110	I110del	ATA	---	105	105	AY.3	0.001044
ORF7a	110	I110del	ATA	---	104	104	AY.29	0.00164
ORF7a	110	I110del	ATA	---	103	103	AY.33	0.006878
ORF7a	110	I110T	aTa	aCa	92	92	B.1.1.7	0.000082
ORF7a	110	I110T	aTa	aCa	87	87	B.1.258.17	0.009046
ORF7a	110	I110del	ATA	---	84	84	AY.43	0.000372
ORF7a	110	I110T	aTa	aCa	83	83	B.1.617.2	0.000313
ORF7a	110	I110L	Ata	Tta	67	82	All	0.000013
ORF7a	110	I110L	Ata	Cta	11	82	All	0.000002
ORF7a	110	I110L	AtA	CtC	4	82	All	0.000001
ORF7a	110	I110del1	Ata	-ta	82	82	AY.103	0.000509
ORF7a	110	I110del1	Ata	-ta	80	80	B.1.617.2	0.000301
ORF7a	110	I110del	ATA	---	76	76	B.1.36.18	0.031933
ORF7a	110	I110del1	Ata	-ta	70	72	AY.25	0.000421
ORF7a	110	I110del1	AtA	-tN	1	72	AY.25	0.000006
ORF7a	110	I110del1	atA	at-	1	72	AY.25	0.000006
ORF7a	110	I110del	ATA	---	67	67	AY.6	0.002756
ORF7a	110	I110T	aTa	aCa	63	63	B.1.1.226	0.366279
ORF7a	110	I110del1	Ata	-ta	62	62	AY.44	0.000377
ORF7a	110	I110del	ATA	---	61	61	P.1	0.000961
ORF7a	110	I110del	ATA	---	59	59	AY.26	0.00167
ORF7a	110	I110V	Ata	Gta	59	59	AY.4	0.000092
ORF7a	110	I110del	ATA	---	58	58	AY.46	0.006037
ORF7a	110	I110M	atA	atG	55	55	All	0.000011
ORF7a	110	I110T	aTa	aCa	55	55	AY.46.4	0.009048
ORF7a	110	I110del	ATA	---	52	52	AY.42	0.002092
ORF7a	110	I110del	ATA	---	52	52	B.1.1.519	0.002065
ORF7a	110	I110T	aTa	aCa	49	49	C.35	0.037926
ORF7a	110	I110del	ATA	---	46	46	B.1	0.000421
ORF7a	110	I110del	ATA	---	44	44	B.1.2	0.000387
ORF7a	110	I110T	aTa	aCa	42	42	AY.43	0.000186
ORF7a	110	I110del1	Ata	-ta	38	38	AY.5	0.000785
ORF7a	110	I110V	Ata	Gta	38	38	B.1.1.7	0.000034
ORF7a	110	I110del	ATA	---	38	38	B.1.177	0.0005
ORF7a	110	I110del	ATA	---	37	37	B.1.526	0.00087
ORF7a	110	I110del	ATA	---	34	34	AY.74	0.003932
ORF7a	110	I110del1	Ata	-ta	33	33	AY.43	0.000146
ORF7a	110	I110T	aTa	aCa	33	33	P.1	0.00052
ORF7a	110	I110del	ATA	---	32	32	AY.7	0.006272
ORF7a	110	I110del	ATA	---	29	29	AY.39	0.000717
ORF7a	110	I110V	Ata	Gta	29	29	B.1.617.2	0.000109
ORF7a	110	I110T	aTa	aCa	27	27	B.1.1.222	0.005508
ORF7a	110	I110del2	aTA	a--	13	25	All	0.000002
ORF7a	110	I110del2	ATa	--a	11	25	All	0.000002
ORF7a	110	I110del2	ATA	--N	1	25	All	0
ORF7a	110	I110del	ATA	---	24	24	AY.102	0.000636
ORF7a	110	I110del	ATA	---	24	24	B.1.1	0.000435
ORF7a	110	I110M	atA	atG	23	23	B.1.1.7	0.000021
ORF7a	110	I110del1	Ata	-ta	22	23	B.1.526	0.000517
ORF7a	110	I110del1	AtA	-tG	1	23	B.1.526	0.000024
ORF7a	110	I110del1	Ata	-ta	21	22	AY.3	0.000209
ORF7a	110	I110del1	ATA	-NN	1	22	AY.3	0.00001
ORF7a	110	I110del2	ATa	--a	11	22	B.1.1.7	0.00001
ORF7a	110	I110del2	aTA	a--	11	22	B.1.1.7	0.00001
ORF7a	110	I110T	aTa	aCa	21	21	AY.100	0.000966
ORF7a	110	I110del	ATA	---	21	21	AY.53	0.006038
ORF7a	110	I110V	Ata	Gta	21	21	B.1	0.000192
ORF7a	110	I110del1	Ata	-ta	21	21	B.1.2	0.000185
ORF7a	110	I110T	aTa	aCa	20	20	B.1	0.000183
ORF7a	110	I110T	aTa	aCa	20	20	B.1.1.519	0.000794
ORF7a	110	I110del	ATA	---	20	20	B.1.370	0.16
ORF7a	110	I110V	Ata	Gta	19	19	AY.43	0.000084
ORF7a	110	I110del	ATA	---	19	19	B.1.1.214	0.001054
ORF7a	110	I110V	Ata	Gta	19	19	B.1.36.36	0.011439
ORF7a	110	I110T	aTa	aCa	18	18	AY.102	0.000477
ORF7a	110	I110del	ATA	---	18	18	AY.113	0.002563
ORF7a	110	I110del1	Ata	-ta	18	18	AY.4.2	0.00039
ORF7a	110	I110del1	Ata	-ta	18	18	AY.4.4	0.007365
ORF7a	110	I110del1	Ata	-ta	17	17	AY.46.5	0.003373
ORF7a	110	I110del	ATA	---	17	17	AY.47	0.000529
ORF7a	110	I110del1	Ata	-ta	17	17	AY.98.1	0.000823
ORF7a	110	I110del	ATA	---	17	17	B.1.427	0.000858
ORF7a	110	I110del	ATA	---	16	16	AY.9	0.001082
ORF7a	110	I110V	Ata	Gta	15	15	AY.103	0.000093
ORF7a	110	I110V	Ata	Gta	15	15	B.1.1.333	0.016146
ORF7a	110	I110del	ATA	---	15	15	B.1.234	0.001979
ORF7a	110	I110del	ATA	---	14	14	AY.118	0.000877
ORF7a	110	I110del	ATA	---	14	14	AY.121	0.001894
ORF7a	110	I110del1	Ata	-ta	14	14	AY.47	0.000435
ORF7a	110	I110del	ATA	---	14	14	B.1.1.37	0.0027
ORF7a	110	I110del1	Ata	-ta	13	13	AY.113	0.001851
ORF7a	110	I110T	aTa	aCa	13	13	AY.3	0.000129
ORF7a	110	I110del	ATA	---	13	13	AY.46.6	0.000939
ORF7a	110	I110del	ATA	---	13	13	AY.5	0.000268
ORF7a	110	I110del	ATA	---	13	13	AY.75	0.000728
ORF7a	110	I110L	Ata	Tta	10	13	B.1.1.7	0.000009
ORF7a	110	I110L	Ata	Cta	3	13	B.1.1.7	0.000003
ORF7a	110	I110T	aTa	aCa	13	13	B.1.2	0.000114
ORF7a	110	I110del	ATA	---	12	12	AY.14	0.001056
ORF7a	110	I110del1	Ata	-ta	12	12	AY.39	0.000297
ORF7a	110	I110del	ATA	---	12	12	B.1.351	0.000357
ORF7a	110	I110M	atA	atG	11	11	AY.103	0.000068
ORF7a	110	I110del	ATA	---	11	11	AY.120	0.000409
ORF7a	110	I110del1	Ata	-ta	11	11	AY.120	0.000409
ORF7a	110	I110V	Ata	Gta	11	11	AY.39	0.000272
ORF7a	110	I110T	aTa	aCa	11	11	AY.44	0.000067
ORF7a	110	I110del	ATA	---	11	11	D.2	0.000825
ORF7a	110	I110K	aTa	aAa	10	10	All	0.000002
ORF7a	110	I110del	ATA	---	10	10	AY.119	0.000353
ORF7a	110	I110T	aTa	aCa	10	10	AY.25	0.00006
ORF7a	110	I110V	Ata	Gta	10	10	AY.25	0.00006
ORF7a	110	I110del1	Ata	-ta	10	10	AY.46	0.001041
ORF7a	110	I110T	aTa	aCa	10	10	AY.9.2	0.000367
ORF7a	110	I110del	ATA	---	10	10	B.1.429	0.000235
ORF7a	110	I110del1	Ata	-ta	10	10	P.1	0.000158
ORF7a	110	I110del1	Ata	-ta	9	9	AY.119	0.000318
ORF7a	110	I110del1	Ata	-ta	9	9	AY.26	0.000255
ORF7a	110	I110V	Ata	Gta	9	9	AY.29	0.000142
ORF7a	110	I110del	ATA	---	9	9	AY.54	0.000858
ORF7a	110	I110T	aTa	aCa	9	9	B.1.177	0.000119
ORF7a	110	I110del1	Ata	-ta	8	8	AY.102	0.000212
ORF7a	110	I110T	aTa	aCa	8	8	AY.103	0.00005
ORF7a	110	I110del	ATA	---	8	8	AY.105	0.005145
ORF7a	110	I110del	ATA	---	8	8	AY.117	0.000676
ORF7a	110	I110del1	Ata	-ta	7	8	AY.120.1	0.002247
ORF7a	110	I110del1	atA	at-	1	8	AY.120.1	0.000321
ORF7a	110	I110V	Ata	Gta	8	8	AY.23	0.000558
ORF7a	110	I110del	ATA	---	8	8	AY.4.2	0.000174
ORF7a	110	I110V	Ata	Gta	8	8	AY.46.6	0.000578
ORF7a	110	I110del	ATA	---	8	8	AY.7.2	0.004474
ORF7a	110	I110del	ATA	---	8	8	AY.91	0.005844
ORF7a	110	I110T	aTa	aCa	8	8	AY.99.1	0.012422
ORF7a	110	I110L	Ata	Tta	8	8	B.1	0.000073
ORF7a	110	I110del	ATA	---	8	8	B.1.1.284	0.000859
ORF7a	110	I110del	ATA	---	8	8	B.1.160	0.00025
ORF7a	110	I110del	ATA	---	8	8	B.1.621	0.000708
ORF7a	110	I110del1	Ata	-ta	7	7	AY.29	0.00011
ORF7a	110	I110L	Ata	Tta	7	7	AY.39.1	0.000277
ORF7a	110	I110T	aTa	aCa	7	7	AY.42	0.000282
ORF7a	110	I110V	Ata	Gta	7	7	B.1.575	0.002124
ORF7a	110	I110I	atA	atT	7	7	B.1.617.2	0.000026
ORF7a	110	I110del1	Ata	-ta	7	7	B.1.637	0.000512
ORF7a	110	I110L	Ata	Cta	2	6		0.111111
ORF7a	110	I110L	Ata	Tta	2	6		0.111111
ORF7a	110	I110L	AtA	CtC	2	6		0.111111
ORF7a	110	I110R	aTa	aGa	6	6	All	0.000001
ORF7a	110	I110V	Ata	Gta	6	6	AY.10	0.00318
ORF7a	110	I110del1	Ata	-ta	6	6	AY.20	0.000233
ORF7a	110	I110I	atA	atT	6	6	AY.4	0.000009
ORF7a	110	I110T	aTa	aCa	6	6	B.1.429	0.000141
ORF7a	110	I110T	aTa	aCa	6	6	B.1.617.1	0.000774
ORF7a	110	I110T	aTa	aCa	6	6	B.1.637	0.000438
ORF7a	110	I110del	ATA	---	6	6	C.37	0.000696
ORF7a	110	I110I	atA	atT	3	5		0.166667
ORF7a	110	I110I	atA	atC	2	5		0.111111
ORF7a	110	I110del	ATA	---	5	5	AY.100	0.00023
ORF7a	110	I110T	aTa	aCa	5	5	AY.20	0.000194
ORF7a	110	I110del1	Ata	-ta	5	5	AY.3.1	0.000426
ORF7a	110	I110del	ATA	---	5	5	AY.3.1	0.000426
ORF7a	110	I110T	aTa	aCa	5	5	AY.33	0.000334
ORF7a	110	I110del1	Ata	-ta	5	5	AY.39.1	0.000198
ORF7a	110	I110del	ATA	---	5	5	AY.45	0.000608
ORF7a	110	I110T	aTa	aCa	5	5	AY.47	0.000156
ORF7a	110	I110T	aTa	aCa	5	5	AY.5	0.000103
ORF7a	110	I110del	ATA	---	5	5	AY.70	0.001043
ORF7a	110	I110del	ATA	---	5	5	AY.79	0.006053
ORF7a	110	I110del	ATA	---	5	5	AY.98.1	0.000242
ORF7a	110	I110del	ATA	---	5	5	B.1.1.318	0.001509
ORF7a	110	I110del1	Ata	-ta	5	5	B.1.1.373	0.119048
ORF7a	110	I110V	Ata	Gta	5	5	B.1.128	0.003177
ORF7a	110	I110del	ATA	---	5	5	B.1.243	0.000348
ORF7a	110	I110V	Ata	Gta	5	5	B.1.258	0.000333
ORF7a	110	I110del	ATA	---	5	5	B.1.258.17	0.00052
ORF7a	110	I110T	aTa	aCa	5	5	B.1.351	0.000149
ORF7a	110	I110del	ATA	---	5	5	P.1.7	0.001596
ORF7a	110	I110del	ATA	---	5	5	P.2	0.000933
ORF7a	110	I110T	aTa	aCa	4	4	A.1	0.001127
ORF7a	110	I110del	ATA	---	4	4	AY.116	0.001147
ORF7a	110	I110del1	Ata	-ta	4	4	AY.118	0.000251
ORF7a	110	I110del	ATA	---	4	4	AY.120.1	0.001284
ORF7a	110	I110T	aTa	aCa	4	4	AY.121	0.000541
ORF7a	110	I110del	ATA	---	4	4	AY.23	0.000279
ORF7a	110	I110del1	Ata	-ta	4	4	AY.23.1	0.001669
ORF7a	110	I110del	ATA	---	4	4	AY.27	0.000259
ORF7a	110	I110del1	Ata	-ta	4	4	AY.35	0.000932
ORF7a	110	I110L	Ata	Tta	4	4	AY.4	0.000006
ORF7a	110	I110T	aTa	aCa	4	4	AY.4.3	0.003367
ORF7a	110	I110del	ATA	---	4	4	AY.4.5	0.00043
ORF7a	110	I110I	atA	atT	2	4	AY.43	0.000009
ORF7a	110	I110I	atA	atC	2	4	AY.43	0.000009
ORF7a	110	I110L	Ata	Tta	4	4	AY.44	0.000024
ORF7a	110	I110del1	Ata	-ta	4	4	AY.46.6	0.000289
ORF7a	110	I110V	Ata	Gta	4	4	AY.6	0.000165
ORF7a	110	I110del1	Ata	-ta	3	4	AY.6	0.000123
ORF7a	110	I110del1	AtA	-tN	1	4	AY.6	0.000041
ORF7a	110	I110del	ATA	---	4	4	AY.60	0.003752
ORF7a	110	I110del	ATA	---	4	4	AY.8	0.002424
ORF7a	110	I110del	ATA	---	4	4	AY.9.1	0.000335
ORF7a	110	I110del1	Ata	-ta	4	4	AY.92	0.001149
ORF7a	110	I110del1	Ata	-ta	4	4	AY.99.2	0.000369
ORF7a	110	I110del1	Ata	-ta	4	4	B.1	0.000037
ORF7a	110	I110T	aTa	aCa	4	4	B.1.1	0.000073
ORF7a	110	I110I	atA	atC	2	4	B.1.1	0.000036
ORF7a	110	I110I	atA	atT	2	4	B.1.1	0.000036
ORF7a	110	I110del1	Ata	-ta	4	4	B.1.177	0.000053
ORF7a	110	I110V	Ata	Gta	4	4	B.1.177	0.000053
ORF7a	110	I110del	ATA	---	4	4	B.1.177.7	0.000659
ORF7a	110	I110del1	Ata	-ta	4	4	B.1.234	0.000528
ORF7a	110	I110del1	Ata	-ta	4	4	B.1.525	0.000453
ORF7a	110	I110T	aTa	aCa	4	4	B.1.526	0.000094
ORF7a	110	I110del	ATA	---	4	4	B.1.575	0.001214
ORF7a	110	I110del	ATA	---	4	4	B.1.595	0.001044
ORF7a	110	I110del	ATA	---	4	4	B.1.596	0.000349
ORF7a	110	I110del	ATA	---	4	4	B.1.621.1	0.002023
ORF7a	110	I110del	ATA	---	4	4	B.1.628	0.001409
ORF7a	110	I110V	Ata	Gta	4	4	C.36.3.1	0.01087
ORF7a	110	I110del	ATA	---	4	4	N.7	0.117647
ORF7a	110	I110V	Ata	Gta	4	4	P.1	0.000063
ORF7a	110	I110del	ATA	---	4	4	P.1.14	0.000191
ORF7a	110	I110del	ATA	---	4	4	P.1.15	0.000929
ORF7a	110	I110del	ATA	---	4	4	Q.8	0.00066
ORF7a	110	I110K	aTa	aAa	3	3		0.166667
ORF7a	110	I110N	aTA	aAC	2	3		0.111111
ORF7a	110	I110N	aTA	aAT	1	3		0.055556
ORF7a	110	I110F	AtA	TtT	3	3	All	0.000001
ORF7a	110	I110N	aTA	aAC	2	3	All	0
ORF7a	110	I110N	aTA	aAT	1	3	All	0
ORF7a	110	I110del1	Ata	-ta	3	3	AY.100	0.000138
ORF7a	110	I110V	Ata	Gta	3	3	AY.102	0.00008
ORF7a	110	I110del1	Ata	-ta	3	3	AY.105	0.001929
ORF7a	110	I110del1	Ata	-ta	3	3	AY.114	0.000693
ORF7a	110	I110T	aTa	aCa	3	3	AY.118	0.000188
ORF7a	110	I110T	aTa	aCa	3	3	AY.120	0.000112
ORF7a	110	I110del	ATA	---	3	3	AY.13	0.000483
ORF7a	110	I110del	ATA	---	3	3	AY.20	0.000117
ORF7a	110	I110del	ATA	---	3	3	AY.24	0.001293
ORF7a	110	I110T	aTa	aCa	3	3	AY.29	0.000047
ORF7a	110	I110L	Ata	Tta	3	3	AY.3	0.00003
ORF7a	110	I110del	ATA	---	3	3	AY.36	0.000445
ORF7a	110	I110T	aTa	aCa	3	3	AY.39.1	0.000119
ORF7a	110	I110del1	Ata	-ta	3	3	AY.4.2.1	0.000447
ORF7a	110	I110del1	Ata	-ta	3	3	AY.42	0.000121
ORF7a	110	I110M	atA	atG	3	3	AY.43	0.000013
ORF7a	110	I110L	Ata	Tta	2	3	AY.43	0.000009
ORF7a	110	I110L	Ata	Cta	1	3	AY.43	0.000004
ORF7a	110	I110del1	Ata	-ta	3	3	AY.45	0.000365
ORF7a	110	I110V	Ata	Gta	3	3	AY.45	0.000365
ORF7a	110	I110V	Ata	Gta	3	3	AY.46.4	0.000494
ORF7a	110	I110V	Ata	Gta	3	3	AY.47	0.000093
ORF7a	110	I110del	ATA	---	3	3	AY.5.3	0.001012
ORF7a	110	I110del	ATA	---	3	3	AY.58	0.002722
ORF7a	110	I110del	ATA	---	3	3	AY.69	0.00056
ORF7a	110	I110del	ATA	---	3	3	AY.72	0.004082
ORF7a	110	I110del	ATA	---	3	3	AY.75.1	0.000541
ORF7a	110	I110del1	Ata	-ta	3	3	AY.9	0.000203
ORF7a	110	I110del	ATA	---	3	3	AY.99.2	0.000276
ORF7a	110	I110I	atA	atT	2	3	B.1	0.000018
ORF7a	110	I110I	atA	atC	1	3	B.1	0.000009
ORF7a	110	I110del1	atA	at-	3	3	B.1.1.1	0.00098
ORF7a	110	I110del1	Ata	-ta	3	3	B.1.1.214	0.000166
ORF7a	110	I110T	aTa	aCa	3	3	B.1.1.214	0.000166
ORF7a	110	I110T	aTa	aCa	3	3	B.1.1.25	0.001706
ORF7a	110	I110I	atA	atC	3	3	B.1.1.311	0.001074
ORF7a	110	I110del	ATA	---	3	3	B.1.1.58	0.016129
ORF7a	110	I110R	aTa	aGa	3	3	B.1.1.7	0.000003
ORF7a	110	I110I	atA	atT	2	3	B.1.1.7	0.000002
ORF7a	110	I110I	atA	atC	1	3	B.1.1.7	0.000001
ORF7a	110	I110del1	Ata	-ta	3	3	B.1.110.3	0.002155
ORF7a	110	I110del	ATA	---	3	3	B.1.13	0.007126
ORF7a	110	I110T	aTa	aCa	3	3	B.1.177.60	0.000655
ORF7a	110	I110I	atA	atT	3	3	B.1.206	0.002447
ORF7a	110	I110del1	Ata	-ta	3	3	B.1.243	0.000209
ORF7a	110	I110del	ATA	---	3	3	B.1.351.2	0.000908
ORF7a	110	I110del	ATA	---	3	3	B.1.36	0.000438
ORF7a	110	I110T	aTa	aCa	3	3	B.1.36.29	0.001552
ORF7a	110	I110del	ATA	---	3	3	B.1.389	0.003006
ORF7a	110	I110V	Ata	Gta	3	3	B.1.438.1	0.000322
ORF7a	110	I110del	ATA	---	3	3	B.1.525	0.000339
ORF7a	110	I110L	Ata	Tta	3	3	B.1.596	0.000261
ORF7a	110	I110del	ATA	---	3	3	B.1.617.1	0.000387
ORF7a	110	I110V	Ata	Gta	3	3	B.1.621	0.000266
ORF7a	110	I110del1	Ata	-ta	3	3	B.1.621	0.000266
ORF7a	110	I110del	ATA	---	3	3	B.1.626	0.017143
ORF7a	110	I110T	aTa	aCa	3	3	C.37	0.000348
ORF7a	110	I110del1	Ata	-ta	3	3	D.2	0.000225
ORF7a	110	I110del1	atA	at-	3	3	P.1.14	0.000143
ORF7a	110	I110del	ATA	---	3	3	Q.3	0.000435
ORF7a	110	I110del	ATA	---	3	3	R.1	0.00027
ORF7a	110	I110F	AtA	TtT	2	2		0.111111
ORF7a	110	I110Q	ATa	CAa	2	2		0.111111
ORF7a	110	I110del	ATA	---	2	2		0.111111
ORF7a	110	I110H	ATA	CAC	2	2		0.111111
ORF7a	110	I110del	ATA	---	2	2	A.2.5	0.000998
ORF7a	110	I110del	ATA	---	2	2	A.28	0.005291
ORF7a	110	I110del1	Ata	-ta	2	2	A.29	0.010638
ORF7a	110	I110X	ATa	TAa	2	2	All	0
ORF7a	110	I110A	ATa	GCa	2	2	All	0
ORF7a	110	I110D	ATA	GAT	2	2	All	0
ORF7a	110	I110Q	ATa	CAa	2	2	All	0
ORF7a	110	I110H	ATA	CAC	2	2	All	0
ORF7a	110	I110L	Ata	Tta	2	2	AY.102	0.000053
ORF7a	110	I110I	atA	atT	2	2	AY.106	0.00067
ORF7a	110	I110del	ATA	---	2	2	AY.108	0.002205
ORF7a	110	I110V	Ata	Gta	2	2	AY.109	0.001479
ORF7a	110	I110del1	Ata	-ta	2	2	AY.110	0.000225
ORF7a	110	I110del	ATA	---	2	2	AY.110	0.000225
ORF7a	110	I110L	Ata	Tta	2	2	AY.118	0.000125
ORF7a	110	I110T	aTa	aCa	2	2	AY.119	0.000071
ORF7a	110	I110del	ATA	---	2	2	AY.12	0.000632
ORF7a	110	I110del1	Ata	-ta	2	2	AY.14	0.000176
ORF7a	110	I110del	ATA	---	2	2	AY.16.1	0.00094
ORF7a	110	I110L	Ata	Tta	2	2	AY.25	0.000012
ORF7a	110	I110I	atA	atC	2	2	AY.25	0.000012
ORF7a	110	I110R	aTa	aGa	2	2	AY.25	0.000012
ORF7a	110	I110del	ATA	---	2	2	AY.30	0.000791
ORF7a	110	I110del1	Ata	-ta	2	2	AY.33	0.000134
ORF7a	110	I110del	ATA	---	2	2	AY.34	0.000194
ORF7a	110	I110del1	Ata	-ta	2	2	AY.34	0.000194
ORF7a	110	I110del	ATA	---	2	2	AY.38	0.000999
ORF7a	110	I110D	ATA	GAT	2	2	AY.4	0.000003
ORF7a	110	I110V	Ata	Gta	2	2	AY.4.2	0.000043
ORF7a	110	I110T	aTa	aCa	2	2	AY.46	0.000208
ORF7a	110	I110del1	Ata	-ta	2	2	AY.46.4	0.000329
ORF7a	110	I110del	ATA	---	2	2	AY.46.5	0.000397
ORF7a	110	I110V	Ata	Gta	2	2	AY.53	0.000575
ORF7a	110	I110K	aTa	aAa	2	2	AY.53	0.000575
ORF7a	110	I110del	ATA	---	2	2	AY.55	0.001835
ORF7a	110	I110del	ATA	---	2	2	AY.61	0.00021
ORF7a	110	I110T	aTa	aCa	2	2	AY.62	0.000871
ORF7a	110	I110del	ATA	---	2	2	AY.62	0.000871
ORF7a	110	I110del	ATA	---	2	2	AY.68	0.000547
ORF7a	110	I110T	aTa	aCa	2	2	AY.69	0.000373
ORF7a	110	I110del	ATA	---	2	2	AY.7.1	0.000225
ORF7a	110	I110del1	Ata	-ta	2	2	AY.75	0.000112
ORF7a	110	I110T	aTa	aCa	2	2	AY.75.1	0.000361
ORF7a	110	I110del	ATA	---	2	2	AY.77	0.002255
ORF7a	110	I110T	aTa	aCa	2	2	AY.77	0.002255
ORF7a	110	I110del	ATA	---	2	2	AY.85	0.000854
ORF7a	110	I110del	ATA	---	2	2	AY.9.2	0.000073
ORF7a	110	I110del1	Ata	-ta	2	2	AY.95	0.001522
ORF7a	110	I110L	Ata	Tta	2	2	B	0.000256
ORF7a	110	I110L	AtA	CtC	2	2	B.1.1	0.000036
ORF7a	110	I110V	Ata	Gta	2	2	B.1.1	0.000036
ORF7a	110	I110del	ATA	---	2	2	B.1.1.155	0.142857
ORF7a	110	I110V	Ata	Gta	2	2	B.1.1.269	0.002706
ORF7a	110	I110del	ATA	---	2	2	B.1.1.317	0.000823
ORF7a	110	I110del	ATA	---	2	2	B.1.1.33	0.000842
ORF7a	110	I110T	aTa	aCa	2	2	B.1.1.397	0.004505
ORF7a	110	I110del	ATA	---	2	2	B.1.1.411	0.029412
ORF7a	110	I110del1	Ata	-ta	2	2	B.1.1.449	0.045455
ORF7a	110	I110del1	Ata	-ta	2	2	B.1.1.519	0.000079
ORF7a	110	I110T	aTa	aCa	2	2	B.1.160.8	0.002577
ORF7a	110	I110del	ATA	---	2	2	B.1.177.57	0.000562
ORF7a	110	I110del	ATA	---	2	2	B.1.177.60	0.000437
ORF7a	110	I110del	ATA	---	2	2	B.1.177.86	0.000367
ORF7a	110	I110M	atA	atG	2	2	B.1.2	0.000018
ORF7a	110	I110del	ATA	---	2	2	B.1.221	0.000142
ORF7a	110	I110V	Ata	Gta	2	2	B.1.239	0.002442
ORF7a	110	I110T	aTa	aCa	2	2	B.1.243	0.000139
ORF7a	110	I110del	ATA	---	2	2	B.1.258	0.000133
ORF7a	110	I110del	ATA	---	2	2	B.1.258.11	0.000793
ORF7a	110	I110del	ATA	---	2	2	B.1.311	0.000549
ORF7a	110	I110del	ATA	---	2	2	B.1.350	0.005865
ORF7a	110	I110del1	Ata	-ta	2	2	B.1.351	0.000059
ORF7a	110	I110T	aTa	aCa	2	2	B.1.36	0.000292
ORF7a	110	I110V	Ata	Gta	2	2	B.1.36	0.000292
ORF7a	110	I110I	atA	atC	2	2	B.1.36.1	0.002281
ORF7a	110	I110T	aTa	aCa	2	2	B.1.36.22	0.002415
ORF7a	110	I110del	ATA	---	2	2	B.1.36.29	0.001035
ORF7a	110	I110T	aTa	aCa	2	2	B.1.36.31	0.003503
ORF7a	110	I110T	aTa	aCa	2	2	B.1.361	0.002577
ORF7a	110	I110V	Ata	Gta	2	2	B.1.429	0.000047
ORF7a	110	I110T	aTa	aCa	2	2	B.1.466.2	0.000782
ORF7a	110	I110del1	Ata	-ta	2	2	B.1.509	0.001732
ORF7a	110	I110del	ATA	---	2	2	B.1.612	0.005305
ORF7a	110	I110I	atA	atT	2	2	B.1.617.1	0.000258
ORF7a	110	I110del	ATA	---	2	2	B.1.637	0.000146
ORF7a	110	I110del1	Ata	-ta	2	2	C.37	0.000232
ORF7a	110	I110del	ATA	---	2	2	P.1.1	0.000635
ORF7a	110	I110del	ATA	---	2	2	P.1.10	0.000539
ORF7a	110	I110del1	Ata	-ta	2	2	P.1.10	0.000539
ORF7a	110	I110T	aTa	aCa	2	2	P.1.14	0.000096
ORF7a	110	I110V	Ata	Gta	2	2	P.2	0.000373
ORF7a	110	I110del	ATA	---	2	2	Q.4	0.00091
ORF7a	110	I110Y	ATA	TAT	1	1		0.055556
ORF7a	110	I110X	ATa	TAa	1	1		0.055556
ORF7a	110	I110del	ATA	---	1	1	A	0.000387
ORF7a	110	I110del	ATA	---	1	1	A.1	0.000282
ORF7a	110	I110del	ATA	---	1	1	A.2.2	0.001689
ORF7a	110	I110del	ATA	---	1	1	A.23	0.010526
ORF7a	110	I110T	aTA	aCC	1	1	A.27	0.001656
ORF7a	110	I110L	Ata	Tta	1	1	AE.8	0.000489
ORF7a	110	I110del	ATA	---	1	1	AH.3	0.003802
ORF7a	110	I110G	ATA	GGT	1	1	All	0
ORF7a	110	I110S	ATA	TCG	1	1	All	0
ORF7a	110	I110Y	ATA	TAT	1	1	All	0
ORF7a	110	I110T	aTa	aCa	1	1	AM.4	0.003571
ORF7a	110	I110del	ATA	---	1	1	AY.10	0.00053
ORF7a	110	I110V	Ata	Gta	1	1	AY.100	0.000046
ORF7a	110	I110del	ATA	---	1	1	AY.101	0.00049
ORF7a	110	I110del1	Ata	-ta	1	1	AY.101	0.00049
ORF7a	110	I110I	atA	atT	1	1	AY.102	0.000027
ORF7a	110	I110K	aTa	aAa	1	1	AY.102	0.000027
ORF7a	110	I110del2	aTA	a--	1	1	AY.103	0.000006
ORF7a	110	I110T	aTa	aCa	1	1	AY.107	0.000466
ORF7a	110	I110del1	Ata	-ta	1	1	AY.107	0.000466
ORF7a	110	I110del	ATA	---	1	1	AY.109	0.00074
ORF7a	110	I110V	Ata	Gta	1	1	AY.11	0.001339
ORF7a	110	I110del1	Ata	-ta	1	1	AY.11	0.001339
ORF7a	110	I110del1	Ata	-ta	1	1	AY.111	0.000183
ORF7a	110	I110T	aTa	aCa	1	1	AY.113	0.000142
ORF7a	110	I110T	aTa	aCa	1	1	AY.116	0.000287
ORF7a	110	I110I	atA	atT	1	1	AY.117	0.000085
ORF7a	110	I110M	atA	atG	1	1	AY.119	0.000035
ORF7a	110	I110V	Ata	Gta	1	1	AY.120	0.000037
ORF7a	110	I110del	ATA	---	1	1	AY.120.2.1	0.000498
ORF7a	110	I110del1	Ata	-ta	1	1	AY.15	0.002222
ORF7a	110	I110del	ATA	---	1	1	AY.16	0.00038
ORF7a	110	I110del1	Ata	-ta	1	1	AY.19	0.00114
ORF7a	110	I110del	ATA	---	1	1	AY.19	0.00114
ORF7a	110	I110V	Ata	Gta	1	1	AY.20	0.000039
ORF7a	110	I110M	atA	atG	1	1	AY.20	0.000039
ORF7a	110	I110del	ATA	---	1	1	AY.21	0.001898
ORF7a	110	I110del1	Ata	-ta	1	1	AY.23	0.00007
ORF7a	110	I110I	atA	atT	1	1	AY.23	0.00007
ORF7a	110	I110T	aTa	aCa	1	1	AY.24	0.000431
ORF7a	110	I110L	Ata	Cta	1	1	AY.24	0.000431
ORF7a	110	I110del2	aTA	a--	1	1	AY.25	0.000006
ORF7a	110	I110L	Ata	Cta	1	1	AY.26	0.000028
ORF7a	110	I110M	atA	atG	1	1	AY.26	0.000028
ORF7a	110	I110I	atA	atT	1	1	AY.27	0.000065
ORF7a	110	I110del	ATA	---	1	1	AY.28	0.00189
ORF7a	110	I110del	ATA	---	1	1	AY.29.1	0.000221
ORF7a	110	I110A	ATa	GCa	1	1	AY.3	0.00001
ORF7a	110	I110M	atA	atG	1	1	AY.3	0.00001
ORF7a	110	I110T	aTa	aCa	1	1	AY.3.1	0.000085
ORF7a	110	I110T	aTa	aCa	1	1	AY.30	0.000396
ORF7a	110	I110I	atA	atT	1	1	AY.30	0.000396
ORF7a	110	I110I	atA	atT	1	1	AY.32	0.000532
ORF7a	110	I110del	ATA	---	1	1	AY.35	0.000233
ORF7a	110	I110I	atA	atT	1	1	AY.36	0.000148
ORF7a	110	I110del1	Ata	-ta	1	1	AY.36	0.000148
ORF7a	110	I110L	Ata	Cta	1	1	AY.39	0.000025
ORF7a	110	I110T	aTa	aCa	1	1	AY.39	0.000025
ORF7a	110	I110V	Ata	Gta	1	1	AY.39.1	0.00004
ORF7a	110	I110del	ATA	---	1	1	AY.39.1	0.00004
ORF7a	110	I110del1	Ata	-ta	1	1	AY.39.1.1	0.000725
ORF7a	110	I110M	atA	atG	1	1	AY.4	0.000002
ORF7a	110	I110del1	Ata	-ta	1	1	AY.4.1	0.000737
ORF7a	110	I110T	aTa	aCa	1	1	AY.4.2.1	0.000149
ORF7a	110	I110del	ATA	---	1	1	AY.4.2.1	0.000149
ORF7a	110	I110T	aTa	aCa	1	1	AY.4.5	0.000107
ORF7a	110	I110I	atA	atT	1	1	AY.42	0.00004
ORF7a	110	I110K	aTa	aAa	1	1	AY.43	0.000004
ORF7a	110	I110X	ATa	TAa	1	1	AY.43	0.000004
ORF7a	110	I110F	AtA	TtT	1	1	AY.44	0.000006
ORF7a	110	I110I	atA	atT	1	1	AY.44	0.000006
ORF7a	110	I110del2	ATA	--N	1	1	AY.44	0.000006
ORF7a	110	I110M	atA	atG	1	1	AY.45	0.000122
ORF7a	110	I110V	Ata	Gta	1	1	AY.46	0.000104
ORF7a	110	I110T	aTa	aCa	1	1	AY.46.1	0.001027
ORF7a	110	I110del	ATA	---	1	1	AY.46.4	0.000165
ORF7a	110	I110L	Ata	Tta	1	1	AY.46.6	0.000072
ORF7a	110	I110L	Ata	Tta	1	1	AY.47	0.000031
ORF7a	110	I110del1	Ata	-ta	1	1	AY.48	0.000465
ORF7a	110	I110T	aTa	aCa	1	1	AY.48	0.000465
ORF7a	110	I110del	ATA	---	1	1	AY.49	0.003195
ORF7a	110	I110V	Ata	Gta	1	1	AY.5	0.000021
ORF7a	110	I110L	Ata	Tta	1	1	AY.5	0.000021
ORF7a	110	I110del	ATA	---	1	1	AY.57	0.000656
ORF7a	110	I110del1	Ata	-ta	1	1	AY.58	0.000907
ORF7a	110	I110del1	Ata	-ta	1	1	AY.59	0.00053
ORF7a	110	I110V	Ata	Gta	1	1	AY.59	0.00053
ORF7a	110	I110G	ATA	GGT	1	1	AY.60	0.000938
ORF7a	110	I110I	atA	atT	1	1	AY.61	0.000105
ORF7a	110	I110del1	Ata	-ta	1	1	AY.61	0.000105
ORF7a	110	I110T	aTa	aCa	1	1	AY.61	0.000105
ORF7a	110	I110L	Ata	Cta	1	1	AY.61	0.000105
ORF7a	110	I110del	ATA	---	1	1	AY.65	0.000533
ORF7a	110	I110del1	Ata	-ta	1	1	AY.7	0.000196
ORF7a	110	I110del	ATA	---	1	1	AY.71	0.000475
ORF7a	110	I110M	atA	atG	1	1	AY.71	0.000475
ORF7a	110	I110V	Ata	Gta	1	1	AY.71	0.000475
ORF7a	110	I110V	Ata	Gta	1	1	AY.72	0.001361
ORF7a	110	I110V	Ata	Gta	1	1	AY.74	0.000116
ORF7a	110	I110del1	Ata	-ta	1	1	AY.74	0.000116
ORF7a	110	I110del1	Ata	-ta	1	1	AY.75.1	0.00018
ORF7a	110	I110T	aTa	aCa	1	1	AY.84	0.000437
ORF7a	110	I110del1	Ata	-ta	1	1	AY.85	0.000427
ORF7a	110	I110del	ATA	---	1	1	AY.87	0.000833
ORF7a	110	I110del1	Ata	-ta	1	1	AY.9.1	0.000084
ORF7a	110	I110L	Ata	Tta	1	1	AY.9.2	0.000037
ORF7a	110	I110del1	Ata	-ta	1	1	AY.9.2	0.000037
ORF7a	110	I110A	ATa	GCa	1	1	AY.9.2	0.000037
ORF7a	110	I110V	Ata	Gta	1	1	AY.9.2	0.000037
ORF7a	110	I110del	ATA	---	1	1	AY.93	0.000273
ORF7a	110	I110V	Ata	Gta	1	1	AY.95	0.000761
ORF7a	110	I110V	Ata	Gta	1	1	AY.96	0.002075
ORF7a	110	I110del	ATA	---	1	1	AY.98	0.000079
ORF7a	110	I110del	ATA	---	1	1	AY.99	0.001049
ORF7a	110	I110V	AtA	GtT	1	1	AY.99	0.001049
ORF7a	110	I110V	Ata	Gta	1	1	AY.99.2	0.000092
ORF7a	110	I110del	ATA	---	1	1	AZ.2	0.000821
ORF7a	110	I110del	ATA	---	1	1	AZ.3	0.00152
ORF7a	110	I110T	aTa	aCa	1	1	B	0.000128
ORF7a	110	I110del	ATA	---	1	1	B	0.000128
ORF7a	110	I110M	atA	atG	1	1	B.1	0.000009
ORF7a	110	I110K	aTa	aAa	1	1	B.1	0.000009
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.1	0.000018
ORF7a	110	I110del	ATA	---	1	1	B.1.1.121	0.002427
ORF7a	110	I110del	ATA	---	1	1	B.1.1.132	0.014925
ORF7a	110	I110I	atA	atC	1	1	B.1.1.189	0.001513
ORF7a	110	I110del	ATA	---	1	1	B.1.1.222	0.000204
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.1.241	0.00207
ORF7a	110	I110del	ATA	---	1	1	B.1.1.258	0.003257
ORF7a	110	I110del	ATA	---	1	1	B.1.1.265	0.003155
ORF7a	110	I110del	ATA	---	1	1	B.1.1.268	0.014925
ORF7a	110	I110del	ATA	---	1	1	B.1.1.269	0.001353
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.1.274	0.005051
ORF7a	110	I110V	Ata	Gta	1	1	B.1.1.277	0.000759
ORF7a	110	I110T	aTa	aCa	1	1	B.1.1.277	0.000759
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.1.279	0.001121
ORF7a	110	I110T	aTa	aCa	1	1	B.1.1.279	0.001121
ORF7a	110	I110del	ATA	---	1	1	B.1.1.280	0.003086
ORF7a	110	I110I	atA	atC	1	1	B.1.1.282	0.011628
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.1.284	0.000107
ORF7a	110	I110V	Ata	Gta	1	1	B.1.1.302	0.002075
ORF7a	110	I110T	aTa	aCa	1	1	B.1.1.303	0.002762
ORF7a	110	I110L	Ata	Tta	1	1	B.1.1.311	0.000358
ORF7a	110	I110del	ATA	---	1	1	B.1.1.312	0.001912
ORF7a	110	I110del	ATA	---	1	1	B.1.1.316	0.000925
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.1.318	0.000302
ORF7a	110	I110T	aTa	aCa	1	1	B.1.1.318	0.000302
ORF7a	110	I110del	ATA	---	1	1	B.1.1.331	0.011628
ORF7a	110	I110T	aTa	aCa	1	1	B.1.1.349	0.010309
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.1.359	0.027778
ORF7a	110	I110del	ATA	---	1	1	B.1.1.369	0.000446
ORF7a	110	I110K	aTa	aAa	1	1	B.1.1.377	0.001381
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.1.43	0.014925
ORF7a	110	I110del	ATA	---	1	1	B.1.1.434	0.000349
ORF7a	110	I110del	ATA	---	1	1	B.1.1.437	0.010417
ORF7a	110	I110del	ATA	---	1	1	B.1.1.448	0.002033
ORF7a	110	I110V	Ata	Gta	1	1	B.1.1.507	0.008696
ORF7a	110	I110T	aTa	aCa	1	1	B.1.1.517	0.006803
ORF7a	110	I110V	Ata	Gta	1	1	B.1.1.519	0.00004
ORF7a	110	I110T	aTa	aCa	1	1	B.1.1.526	0.003546
ORF7a	110	I110del	ATA	---	1	1	B.1.1.528	0.004808
ORF7a	110	I110del	ATA	---	1	1	B.1.1.63	0.000386
ORF7a	110	I110K	aTa	aAa	1	1	B.1.1.7	0.000001
ORF7a	110	I110del	ATA	---	1	1	B.1.1.70	0.000341
ORF7a	110	I110L	Ata	Tta	1	1	B.1.1.70	0.000341
ORF7a	110	I110V	Ata	Gta	1	1	B.1.105	0.009615
ORF7a	110	I110T	aTa	aCa	1	1	B.1.111	0.001175
ORF7a	110	I110V	Ata	Gta	1	1	B.1.157	0.002985
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.160	0.000031
ORF7a	110	I110T	aTa	aCa	1	1	B.1.160	0.000031
ORF7a	110	I110I	atA	atT	1	1	B.1.160.16	0.000929
ORF7a	110	I110I	atA	atC	1	1	B.1.177	0.000013
ORF7a	110	I110del	ATA	---	1	1	B.1.177.16	0.000664
ORF7a	110	I110del	ATA	---	1	1	B.1.177.21	0.000076
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.177.21	0.000076
ORF7a	110	I110L	Ata	Tta	1	1	B.1.177.23	0.003236
ORF7a	110	I110del	ATA	---	1	1	B.1.177.44	0.000519
ORF7a	110	I110del	ATA	---	1	1	B.1.177.50	0.004695
ORF7a	110	I110M	atA	atG	1	1	B.1.177.63	0.002703
ORF7a	110	I110T	aTa	aCa	1	1	B.1.177.69	0.001484
ORF7a	110	I110del	ATA	---	1	1	B.1.177.80	0.001912
ORF7a	110	I110del	ATA	---	1	1	B.1.177.83	0.001481
ORF7a	110	I110V	Ata	Gta	1	1	B.1.2	0.000009
ORF7a	110	I110L	Ata	Tta	1	1	B.1.2	0.000009
ORF7a	110	I110T	aTa	aCa	1	1	B.1.210	0.002132
ORF7a	110	I110V	Ata	Gta	1	1	B.1.214.2	0.0006
ORF7a	110	I110del	ATA	---	1	1	B.1.214.2	0.0006
ORF7a	110	I110del	ATA	---	1	1	B.1.232	0.000537
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.232	0.000537
ORF7a	110	I110T	aTa	aCa	1	1	B.1.234	0.000132
ORF7a	110	I110del	ATA	---	1	1	B.1.235	0.002519
ORF7a	110	I110del	ATA	---	1	1	B.1.240	0.000216
ORF7a	110	I110I	atA	atC	1	1	B.1.242	0.018868
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.242	0.018868
ORF7a	110	I110V	Ata	Gta	1	1	B.1.243	0.00007
ORF7a	110	I110L	Ata	Tta	1	1	B.1.243	0.00007
ORF7a	110	I110T	aTa	aCa	1	1	B.1.258.11	0.000396
ORF7a	110	I110I	atA	atT	1	1	B.1.258.17	0.000104
ORF7a	110	I110del	ATA	---	1	1	B.1.265	0.001271
ORF7a	110	I110T	aTa	aCa	1	1	B.1.298	0.002114
ORF7a	110	I110del	ATA	---	1	1	B.1.306	0.005714
ORF7a	110	I110I	atA	atT	1	1	B.1.332	0.003497
ORF7a	110	I110T	aTa	aCa	1	1	B.1.335	0.010309
ORF7a	110	I110M	atA	atG	1	1	B.1.350	0.002933
ORF7a	110	I110I	atA	atC	1	1	B.1.351	0.00003
ORF7a	110	I110V	Ata	Gta	1	1	B.1.351.5	0.0006
ORF7a	110	I110I	atA	atC	1	1	B.1.36	0.000146
ORF7a	110	I110M	atA	atG	1	1	B.1.36.8	0.001
ORF7a	110	I110del	ATA	---	1	1	B.1.362	0.001541
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.369	0.000285
ORF7a	110	I110del	ATA	---	1	1	B.1.371	0.001122
ORF7a	110	I110del	ATA	---	1	1	B.1.375	0.00082
ORF7a	110	I110V	Ata	Gta	1	1	B.1.380	0.006623
ORF7a	110	I110M	atA	atG	1	1	B.1.396	0.000706
ORF7a	110	I110T	aTa	aCa	1	1	B.1.413	0.004255
ORF7a	110	I110L	Ata	Tta	1	1	B.1.427	0.00005
ORF7a	110	I110V	Ata	Gta	1	1	B.1.427	0.00005
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.427	0.00005
ORF7a	110	I110L	Ata	Tta	1	1	B.1.429	0.000024
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.429	0.000024
ORF7a	110	I110I	atA	atC	1	1	B.1.438	0.006536
ORF7a	110	I110T	aTa	aCa	1	1	B.1.448	0.002625
ORF7a	110	I110del	ATA	---	1	1	B.1.459	0.004082
ORF7a	110	I110I	atA	atC	1	1	B.1.466.2	0.000391
ORF7a	110	I110del	ATA	---	1	1	B.1.468	0.005714
ORF7a	110	I110M	atA	atG	1	1	B.1.470	0.001404
ORF7a	110	I110del	ATA	---	1	1	B.1.470	0.001404
ORF7a	110	I110V	Ata	Gta	1	1	B.1.499	0.00105
ORF7a	110	I110del	ATA	---	1	1	B.1.503	0.002488
ORF7a	110	I110del	ATA	---	1	1	B.1.517	0.000427
ORF7a	110	I110T	aTa	aCa	1	1	B.1.523	0.002451
ORF7a	110	I110V	Ata	Gta	1	1	B.1.525	0.000113
ORF7a	110	I110L	Ata	Cta	1	1	B.1.526	0.000024
ORF7a	110	I110V	Ata	Gta	1	1	B.1.526	0.000024
ORF7a	110	I110del	ATA	---	1	1	B.1.527	0.003704
ORF7a	110	I110L	Ata	Tta	1	1	B.1.530	0.007143
ORF7a	110	I110V	Ata	Gta	1	1	B.1.561	0.000397
ORF7a	110	I110L	Ata	Tta	1	1	B.1.589	0.007576
ORF7a	110	I110T	aTa	aCa	1	1	B.1.595	0.000261
ORF7a	110	I110del1	Ata	-ta	1	1	B.1.595	0.000261
ORF7a	110	I110T	aTa	aCa	1	1	B.1.596	0.000087
ORF7a	110	I110del1	atA	at-	1	1	B.1.596	0.000087
ORF7a	110	I110R	aTa	aGa	1	1	B.1.609	0.000479
ORF7a	110	I110T	aTa	aCa	1	1	B.1.609	0.000479
ORF7a	110	I110M	atA	atG	1	1	B.1.617.2	0.000004
ORF7a	110	I110S	ATA	TCG	1	1	B.1.617.2	0.000004
ORF7a	110	I110L	Ata	Tta	1	1	B.1.617.2	0.000004
ORF7a	110	I110T	aTa	aCa	1	1	B.1.621	0.000089
ORF7a	110	I110del	ATA	---	1	1	B.1.630	0.005236
ORF7a	110	I110V	Ata	Gta	1	1	B.1.637	0.000073
ORF7a	110	I110V	Ata	Gta	1	1	B.1.78	0.008547
ORF7a	110	I110del	ATA	---	1	1	B.12	0.00641
ORF7a	110	I110I	atA	atT	1	1	B.28	0.003279
ORF7a	110	I110del	ATA	---	1	1	B.30	0.014706
ORF7a	110	I110T	aTa	aCa	1	1	B.40	0.000364
ORF7a	110	I110V	Ata	Gta	1	1	C.1.2	0.004255
ORF7a	110	I110V	Ata	Gta	1	1	C.37	0.000116
ORF7a	110	I110L	Ata	Tta	1	1	D.2	0.000075
ORF7a	110	I110T	aTa	aCa	1	1	D.2	0.000075
ORF7a	110	I110M	atA	atG	1	1	N.5	0.001767
ORF7a	110	I110del	ATA	---	1	1	N.5	0.001767
ORF7a	110	I110del	ATA	---	1	1	N.6	0.007092
ORF7a	110	I110M	atA	atG	1	1	P.1	0.000016
ORF7a	110	I110del	ATA	---	1	1	P.1.12	0.000484
ORF7a	110	I110V	Ata	Gta	1	1	P.1.12	0.000484
ORF7a	110	I110T	aTa	aCa	1	1	P.1.12	0.000484
ORF7a	110	I110del	ATA	---	1	1	P.1.13	0.000898
ORF7a	110	I110del1	Ata	-ta	1	1	P.1.15	0.000232
ORF7a	110	I110del	ATA	---	1	1	P.1.16	0.000374
ORF7a	110	I110del	ATA	---	1	1	P.1.17	0.000162
ORF7a	110	I110del	ATA	---	1	1	P.1.4	0.000977
ORF7a	110	I110del1	Ata	-ta	1	1	P.1.4	0.000977
ORF7a	110	I110del	ATA	---	1	1	Q.1	0.000126
ORF7a	110	I110T	aTa	aCa	1	1	Q.1	0.000126
ORF7a	110	I110del	ATA	---	1	1	Q.2	0.000613
ORF7a	110	I110T	aTa	aCa	1	1	Q.4	0.000455
ORF7a	110	I110T	aTa	aCa	1	1	Q.8	0.000165
ORF7a	110	I110del1	Ata	-ta	1	1	Q.8	0.000165
ORF7a	110	I110T	aTa	aCa	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.