CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 104

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a104V104deldelGTT---46854685127703-27705
ORF7a104V104FnonsynGttTtt375737560.99973427703-27705
ORF7a104V104FnonsynGtTTtC375710.0002661727703-27705
ORF7a104V104del1delGtt-tt158615810.99684727703-27705
ORF7a104V104del1delgtTgt-158640.0025220727703-27705
ORF7a104V104del1delGtT-tG158610.00063051727703-27705
ORF7a104V104InonsynGttAtt4154020.96867527703-27705
ORF7a104V104InonsynGtTAtA415120.028915727703-27705
ORF7a104V104InonsynGtTAtC41510.0024096427703-27705
ORF7a104V104VsyngtTgtC4072770.6805927703-27705
ORF7a104V104VsyngtTgtA4071140.28009827703-27705
ORF7a104V104VsyngtTgtG407160.03931227703-27705
ORF7a104V104LnonsynGttCtt3083070.99675327703-27705
ORF7a104V104LnonsynGtTTtA30810.0032467527703-27705
ORF7a104V104AnonsyngTtgCt224224127703-27705
ORF7a104V104del2delgTTg--53470.88679227703-27705
ORF7a104V104del2delGTt--t5350.094339627703-27705
ORF7a104V104del2delGTT--N5310.018867927703-27705
ORF7a104V104DnonsyngTtgAt1818127703-27705
ORF7a104V104GnonsyngTtgGt13120.92307727703-27705
ORF7a104V104GnonsyngTTgGA1310.076923127703-27705
ORF7a104V104NnonsynGTtAAt33127703-27705
ORF7a104V104YnonsynGTtTAt33127703-27705
ORF7a104V104EnonsyngTTgAA320.66666727703-27705
ORF7a104V104EnonsyngTTgAG310.33333327703-27705
ORF7a104V104KnonsynGTTAAA22127703-27705
ORF7a104V104CnonsynGTtTGt22127703-27705
ORF7a104V104XnonsynGTTTAA11127703-27705
ORF7a104V104RnonsynGTTAGA11127703-27705
ORF7a104V104TnonsynGTtACt11127703-27705
ORF7a104V104SnonsynGTtAGt11127703-27705

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a104V104delGTT---46854685All0.000896
ORF7a104V104FGttTtt37563757All0.000718
ORF7a104V104FGtTTtC13757All0
ORF7a104V104del1Gtt-tt15811586All0.000302
ORF7a104V104del1gtTgt-41586All0.000001
ORF7a104V104del1GtT-tG11586All0
ORF7a104V104delGTT---12161216B.1.1.70.001089
ORF7a104V104del1Gtt-tt10321032AY.39.1.10.747826
ORF7a104V104FGttTtt773774B.1.1.70.000692
ORF7a104V104FGtTTtC1774B.1.1.70.000001
ORF7a104V104delGTT---582582AY.40.000906
ORF7a104V104IGttAtt402415All0.000077
ORF7a104V104IGtTAtA12415All0.000002
ORF7a104V104IGtTAtC1415All0
ORF7a104V104VgtTgtC277407All0.000053
ORF7a104V104VgtTgtA114407All0.000022
ORF7a104V104VgtTgtG16407All0.000003
ORF7a104V104LGttCtt307308All0.000059
ORF7a104V104LGtTTtA1308All0
ORF7a104V104FGttTtt248248AY.40.000386
ORF7a104V104del1Gtt-tt238238AY.39.10.009428
ORF7a104V104delGTT---235235AY.250.001413
ORF7a104V104AgTtgCt224224All0.000043
ORF7a104V104FGttTtt214214B.1.4290.005035
ORF7a104V104delGTT---186186AY.430.000824
ORF7a104V104delGTT---183183AY.830.315517
ORF7a104V104delGTT---167167B.1.617.20.000629
ORF7a104V104LGttCtt164164B.1.177.600.035824
ORF7a104V104FGttTtt164164B.1.617.20.000618
ORF7a104V104FGttTtt163163B.10.001493
ORF7a104V104FGttTtt160160AY.430.000709
ORF7a104V104FGttTtt144144B.1.2430.01002
ORF7a104V104FGttTtt136136AY.270.008802
ORF7a104V104LGttCtt115115B.1.1.70.000103
ORF7a104V104delGTT---113113AY.440.000688
ORF7a104V104delGTT---105105AY.1030.000652
ORF7a104V104delGTT---104104AY.39.1.10.075362
ORF7a104V104IGttAtt102102AY.30.001015
ORF7a104V104delGTT---102102AY.330.006811
ORF7a104V104delGTT---101101AY.30.001005
ORF7a104V104FGttTtt101101AY.3.10.008611
ORF7a104V104FGttTtt100100AY.260.002831
ORF7a104V104FGttTtt9999AY.440.000603
ORF7a104V104IGttAtt9595AY.1180.005952
ORF7a104V104delGTT---9393P.10.001465
ORF7a104V104FGttTtt8888B.1.5030.218905
ORF7a104V104delGTT---8181B.10.000742
ORF7a104V104FGttTtt7171AY.1030.000441
ORF7a104V104delGTT---7070AY.290.001104
ORF7a104V104VgtTgtC3770B.1.1.70.000033
ORF7a104V104VgtTgtA3070B.1.1.70.000027
ORF7a104V104VgtTgtG370B.1.1.70.000003
ORF7a104V104FGttTtt6969AY.1020.001829
ORF7a104V104VgtTgtC6363AY.1170.005325
ORF7a104V104FGttTtt6363AY.7.20.035235
ORF7a104V104delGTT---6262AY.460.006453
ORF7a104V104del1Gtt-tt5555AY.50.001136
ORF7a104V104delGTT---5555B.1.20.000484
ORF7a104V104del2gTTg--4753All0.000009
ORF7a104V104del2GTt--t553All0.000001
ORF7a104V104del2GTT--N153All0
ORF7a104V104AgTtgCt5353AY.40.000082
ORF7a104V104FGttTtt5252AY.850.022213
ORF7a104V104AgTtgCt5252B.1.1.70.000047
ORF7a104V104delGTT---4949AY.420.001971
ORF7a104V104FGttTtt4949B.1.20.000431
ORF7a104V104delGTT---4949B.1.5260.001152
ORF7a104V104FGttTtt4949P.10.000772
ORF7a104V104delGTT---4848AY.260.001359
ORF7a104V104delGTT---4646AY.9.10.003851
ORF7a104V104FGttTtt4545B.1.10.000816
ORF7a104V104delGTT---4545B.1.1.5190.001787
ORF7a104V104FGttTtt4242B.1.1770.000553
ORF7a104V104FGttTtt4242B.1.4970.01322
ORF7a104V104FGttTtt4141B.1.1.3060.017975
ORF7a104V104FGttTtt4141B.1.1600.001279
ORF7a104V104delGTT---4141B.1.1770.00054
ORF7a104V104AgTtgCt4040AY.440.000243
ORF7a104V104FGttTtt3939AY.60.001604
ORF7a104V104FGttTtt3636B.1.2210.002557
ORF7a104V104delGTT---3434AY.390.00084
ORF7a104V104delGTT---3434AY.39.10.001347
ORF7a104V104del1Gtt-tt3434AY.700.007089
ORF7a104V104delGTT---3434AY.740.003932
ORF7a104V104FGttTtt3333AY.250.000198
ORF7a104V104FGttTtt3232AE.80.015648
ORF7a104V104FGttTtt3232AY.50.000661
ORF7a104V104delGTT---3232B.1.10.000581
ORF7a104V104IGttAtt3131AY.430.000137
ORF7a104V104FGttTtt3131B.1.621.10.01568
ORF7a104V104delGTT---3030AY.1180.001879
ORF7a104V104VgtTgtC2730AY.40.000042
ORF7a104V104VgtTgtG230AY.40.000003
ORF7a104V104VgtTgtA130AY.40.000002
ORF7a104V104VgtTgtC1830B.1.617.20.000068
ORF7a104V104VgtTgtA830B.1.617.20.00003
ORF7a104V104VgtTgtG430B.1.617.20.000015
ORF7a104V104del1Gtt-tt2829B.1.617.20.000105
ORF7a104V104del1gtTgt-129B.1.617.20.000004
ORF7a104V104delGTT---2828AY.70.005488
ORF7a104V104del1Gtt-tt2727AY.1180.001692
ORF7a104V104delGTT---2525AY.1020.000663
ORF7a104V104FGttTtt2525B.1.4270.001262
ORF7a104V104FGttTtt2323AY.290.000363
ORF7a104V104del1Gtt-tt2222AY.40.000034
ORF7a104V104FGttTtt2222B.1.1.1810.1
ORF7a104V104delGTT---2222B.1.1.2140.00122
ORF7a104V104delGTT---2121AY.530.006038
ORF7a104V104delGTT---2121AY.60.000864
ORF7a104V104AgTtgCt2121B.1.617.20.000079
ORF7a104V104delGTT---2020AY.470.000622
ORF7a104V104delGTT---2020B.1.3700.16
ORF7a104V104del1Gtt-tt1919AY.1030.000118
ORF7a104V104VgtTgtC1919AY.1190.000671
ORF7a104V104VgtTgtC1319AY.430.000058
ORF7a104V104VgtTgtA619AY.430.000027
ORF7a104V104IGttAtt1919B.1.258.210.147287
ORF7a104V104delGTT---1919B.1.4270.000959
ORF7a104V104DgTtgAt1818All0.000003
ORF7a104V104FGttTtt1818AY.200.0007
ORF7a104V104IGttAtt1818AY.440.00011
ORF7a104V104IGttAtt1718B.1.1.70.000015
ORF7a104V104IGtTAtC118B.1.1.70.000001
ORF7a104V104FGttTtt1717AY.1210.0023
ORF7a104V104VgtTgtC1717AY.30.000169
ORF7a104V104del1Gtt-tt1617B.1.1.70.000014
ORF7a104V104del1gtTgt-117B.1.1.70.000001
ORF7a104V104del1Gtt-tt1516AY.250.00009
ORF7a104V104del1gtTgt-116AY.250.000006
ORF7a104V104IGttAtt1616AY.40.000025
ORF7a104V104delGTT---1616AY.4.20.000347
ORF7a104V104FGttTtt1616AY.470.000498
ORF7a104V104FGttTtt1616AY.98.10.000775
ORF7a104V104FGttTtt1616B.1.2580.001065
ORF7a104V104delGTT---1515AY.1130.002136
ORF7a104V104FGttTtt1515AY.860.012448
ORF7a104V104delGTT---1414AY.1160.004015
ORF7a104V104delGTT---1414AY.1210.001894
ORF7a104V104IGttAtt1414AY.250.000084
ORF7a104V104delGTT---1414B.1.1.370.0027
ORF7a104V104VgtTgtC1414C.370.001625
ORF7a104V104GgTtgGt1213All0.000002
ORF7a104V104GgTTgGA113All0
ORF7a104V104del2gTTg--1313P.10.000205
ORF7a104V104delGTT---1212AY.750.000672
ORF7a104V104FGttTtt1212AY.750.000672
ORF7a104V104FGttTtt1212B0.001534
ORF7a104V104VgtTgtC1111AY.1000.000506
ORF7a104V104delGTT---1111AY.1190.000388
ORF7a104V104delGTT---1111B.1.3510.000327
ORF7a104V104del2gTTg--1111B.1.617.20.000041
ORF7a104V104IGttAtt1010AY.1020.000265
ORF7a104V104FGttTtt1010AY.1190.000353
ORF7a104V104delGTT---1010AY.1200.000372
ORF7a104V104delGTT---1010AY.140.00088
ORF7a104V104del1Gtt-tt1010AY.470.000311
ORF7a104V104AgTtgCt1010AY.940.004427
ORF7a104V104delGTT---1010B.1.2340.001319
ORF7a104V104FGttTtt1010B.1.5170.00427
ORF7a104V104delGTT---99AY.50.000186
ORF7a104V104FGttTtt99B.1.1.2140.000499
ORF7a104V104VgtTgtA59B.1.20.000044
ORF7a104V104VgtTgtC39B.1.20.000026
ORF7a104V104VgtTgtG19B.1.20.000009
ORF7a104V104FGttTtt99B.1.2180.046392
ORF7a104V104VgtTgtA88AY.140.000704
ORF7a104V104del1Gtt-tt88AY.3.10.000682
ORF7a104V104delGTT---88AY.7.20.004474
ORF7a104V104delGTT---88AY.910.005844
ORF7a104V104IGttAtt78B.1.10.000127
ORF7a104V104VgtTgtA78B.1.10.000127
ORF7a104V104IGtTAtA18B.1.10.000018
ORF7a104V104VgtTgtC18B.1.10.000018
ORF7a104V104delGTT---88B.1.1.2220.001632
ORF7a104V104delGTT---88B.1.1.2840.000859
ORF7a104V104FGttTtt88B.1.1.2940.010127
ORF7a104V104VgtTgtA88B.1.1.5190.000318
ORF7a104V104VgtTgtC78B.1.1770.000092
ORF7a104V104VgtTgtA18B.1.1770.000013
ORF7a104V104delGTT---88B.1.2210.000568
ORF7a104V104IGttAtt88B.1.2430.000557
ORF7a104V104FGttTtt88B.1.5960.000697
ORF7a104V104IGttAtt88B.1.617.20.00003
ORF7a104V104delGTT---88C.370.000929
ORF7a104V104VgtTgtC68P.10.000095
ORF7a104V104VgtTgtA28P.10.000032
ORF7a104V104VgtTgtA47AY.250.000024
ORF7a104V104VgtTgtC37AY.250.000018
ORF7a104V104delGTT---77AY.29.10.001544
ORF7a104V104delGTT---77AY.3.10.000597
ORF7a104V104DgTtgAt77AY.390.000173
ORF7a104V104FGttTtt77AY.390.000173
ORF7a104V104FGttTtt77AY.4.20.000152
ORF7a104V104FGttTtt77AY.610.000733
ORF7a104V104FGttTtt77AY.9.20.000257
ORF7a104V104FGttTtt77AY.980.000553
ORF7a104V104FGttTtt77B.1.3950.049296
ORF7a104V104delGTT---77B.1.4290.000165
ORF7a104V104delGTT---77B.1.5250.000792
ORF7a104V104VgtTgtC77B.1.5750.002124
ORF7a104V104delGTT---77B.1.6210.00062
ORF7a104V104IGttAtt460.222222
ORF7a104V104IGtTAtA260.111111
ORF7a104V104FGttTtt66AY.30.00006
ORF7a104V104delGTT---66AY.340.000582
ORF7a104V104delGTT---66AY.410.001764
ORF7a104V104del1Gtt-tt66AY.440.000037
ORF7a104V104delGTT---66AY.46.60.000433
ORF7a104V104delGTT---66AY.9.20.00022
ORF7a104V104delGTT---66AY.98.10.000291
ORF7a104V104FGttTtt66B.1.1.330.002525
ORF7a104V104delGTT---66B.1.177.40.001266
ORF7a104V104FGttTtt66B.1.3510.000178
ORF7a104V104FGttTtt66B.1.36.80.006
ORF7a104V104FGttTtt66B.1.5820.002944
ORF7a104V104delGTT---66B.1.5950.001566
ORF7a104V104delGTT---66D.20.00045
ORF7a104V104delGTT---66P.1.70.001916
ORF7a104V104FGttTtt66Q.40.002729
ORF7a104V104VgtTgtA450.222222
ORF7a104V104VgtTgtG150.055556
ORF7a104V104del1Gtt-tt55AY.1020.000133
ORF7a104V104AgTtgCt55AY.1030.000031
ORF7a104V104IGttAtt55AY.1030.000031
ORF7a104V104VgtTgtA45AY.1030.000025
ORF7a104V104VgtTgtC15AY.1030.000006
ORF7a104V104delGTT---55AY.1170.000423
ORF7a104V104delGTT---55AY.120.10.001605
ORF7a104V104delGTT---55AY.200.000194
ORF7a104V104delGTT---55AY.270.000324
ORF7a104V104AgTtgCt55AY.30.00005
ORF7a104V104del1Gtt-tt55AY.340.000485
ORF7a104V104AgTtgCt55AY.430.000022
ORF7a104V104del2gTTg--45AY.430.000018
ORF7a104V104del2GTt--t15AY.430.000004
ORF7a104V104VgtTgtC35AY.440.000018
ORF7a104V104VgtTgtA25AY.440.000012
ORF7a104V104FGttTtt55AY.540.000477
ORF7a104V104FGttTtt55AY.670.002321
ORF7a104V104delGTT---55AY.790.006053
ORF7a104V104FGttTtt55AY.840.002187
ORF7a104V104FGttTtt55AY.90.000338
ORF7a104V104delGTT---55AY.99.20.000461
ORF7a104V104delGTT---55B.1.1.3180.001509
ORF7a104V104delGTT---55B.1.1.3730.119048
ORF7a104V104delGTT---55B.1.1600.000156
ORF7a104V104IGttAtt55B.1.20.000044
ORF7a104V104delGTT---55B.1.258.170.00052
ORF7a104V104delGTT---55B.1.5960.000436
ORF7a104V104FGttTtt55B.1.617.10.000645
ORF7a104V104FGttTtt55B.1.6210.000443
ORF7a104V104FGttTtt55C.370.00058
ORF7a104V104delGTT---55P.20.000933
ORF7a104V104LGttCtt44AY.1020.000106
ORF7a104V104delGTT---44AY.1140.000924
ORF7a104V104FGttTtt44AY.1170.000338
ORF7a104V104delGTT---44AY.190.004561
ORF7a104V104VgtTgtA44AY.200.000155
ORF7a104V104delGTT---44AY.230.000279
ORF7a104V104IGttAtt44AY.290.000063
ORF7a104V104FGttTtt44AY.330.000267
ORF7a104V104del1Gtt-tt44AY.350.000932
ORF7a104V104delGTT---44AY.360.000593
ORF7a104V104FGttTtt44AY.380.001997
ORF7a104V104delGTT---44AY.4.50.00043
ORF7a104V104del1Gtt-tt44AY.430.000018
ORF7a104V104delGTT---44AY.450.000487
ORF7a104V104FGttTtt44AY.460.000416
ORF7a104V104delGTT---44AY.540.000381
ORF7a104V104delGTT---44AY.720.005442
ORF7a104V104del2gTTg--44AY.80.002424
ORF7a104V104del2GTt--t44AY.840.00175
ORF7a104V104del1Gtt-tt44AY.99.20.000369
ORF7a104V104IGttAtt34B.10.000027
ORF7a104V104IGtTAtA14B.10.000009
ORF7a104V104FGttTtt44B.1.1.2910.00297
ORF7a104V104FGttTtt44B.1.1.5190.000159
ORF7a104V104delGTT---44B.1.1.580.021505
ORF7a104V104delGTT---44B.1.177.70.000659
ORF7a104V104FGttTtt44B.1.258.30.0067
ORF7a104V104delGTT---44B.1.2870.121212
ORF7a104V104FGttTtt44B.1.360.000584
ORF7a104V104FGttTtt44B.1.36.10.004561
ORF7a104V104FGttTtt44B.1.36.290.002069
ORF7a104V104delGTT---44B.1.6190.003484
ORF7a104V104delGTT---44B.1.6280.001409
ORF7a104V104delGTT---44N.70.117647
ORF7a104V104delGTT---44P.1.140.000191
ORF7a104V104delGTT---44P.1.150.000929
ORF7a104V104FGttTtt44P.1.150.000929
ORF7a104V104FGttTtt44P.1.170.000647
ORF7a104V104delGTT---44Q.80.00066
ORF7a104V104DgTtgAt330.166667
ORF7a104V104EgTTgAA230.111111
ORF7a104V104EgTTgAG130.055556
ORF7a104V104FGttTtt33A0.001161
ORF7a104V104NGTtAAt33All0.000001
ORF7a104V104YGTtTAt33All0.000001
ORF7a104V104EgTTgAA23All0
ORF7a104V104EgTTgAG13All0
ORF7a104V104delGTT---33AY.1000.000138
ORF7a104V104FGttTtt33AY.1010.001471
ORF7a104V104delGTT---33AY.1050.001929
ORF7a104V104FGttTtt33AY.1160.00086
ORF7a104V104FGttTtt33AY.120.000948
ORF7a104V104del1Gtt-tt33AY.1200.000112
ORF7a104V104FGttTtt33AY.130.000483
ORF7a104V104delGTT---33AY.240.001293
ORF7a104V104del1Gtt-tt33AY.260.000085
ORF7a104V104del1Gtt-tt33AY.290.000047
ORF7a104V104delGTT---33AY.300.001187
ORF7a104V104VgtTgtC33AY.350.000699
ORF7a104V104FGttTtt33AY.39.10.000119
ORF7a104V104AgTtgCt33AY.39.10.000119
ORF7a104V104GgTtgGt33AY.40.000005
ORF7a104V104FGttTtt33AY.4.50.000322
ORF7a104V104FGttTtt33AY.420.000121
ORF7a104V104del1Gtt-tt33AY.570.001969
ORF7a104V104delGTT---33AY.610.000314
ORF7a104V104delGTT---33AY.690.00056
ORF7a104V104delGTT---33AY.90.000203
ORF7a104V104FGttTtt33AY.920.000862
ORF7a104V104delGTT---33AY.990.003148
ORF7a104V104FGttTtt33AY.99.20.000276
ORF7a104V104GgTtgGt33B.1.1.70.000003
ORF7a104V104FGttTtt33B.1.1110.003525
ORF7a104V104delGTT---33B.1.130.007126
ORF7a104V104IGttAtt23B.1.1770.000026
ORF7a104V104IGtTAtA13B.1.1770.000013
ORF7a104V104LGttCtt33B.1.177.790.007026
ORF7a104V104delGTT---33B.1.177.860.00055
ORF7a104V104del1Gtt-tt33B.1.20.000026
ORF7a104V104FGttTtt33B.1.221.10.008721
ORF7a104V104delGTT---33B.1.2430.000209
ORF7a104V104FGttTtt33B.1.258.170.000312
ORF7a104V104delGTT---33B.1.351.20.000908
ORF7a104V104delGTT---33B.1.360.000438
ORF7a104V104AgTtgCt33B.1.360.000438
ORF7a104V104FGttTtt33B.1.36.380.004926
ORF7a104V104delGTT---33B.1.3890.003006
ORF7a104V104FGttTtt33B.1.3910.003382
ORF7a104V104VgtTgtA23B.1.4290.000047
ORF7a104V104VgtTgtG13B.1.4290.000024
ORF7a104V104FGttTtt33B.1.5510.003871
ORF7a104V104FGttTtt33B.1.6050.017857
ORF7a104V104delGTT---33B.1.617.10.000387
ORF7a104V104LGttCtt33B.1.617.20.000011
ORF7a104V104FGttTtt33B.1.6190.002613
ORF7a104V104delGTT---33B.1.6260.017143
ORF7a104V104FGttTtt33B.1.6280.001057
ORF7a104V104delGTT---33B.1.6370.000219
ORF7a104V104FGttTtt33B.100.024793
ORF7a104V104FGttTtt33P.20.00056
ORF7a104V104delGTT---33Q.30.000435
ORF7a104V104delGTT---33Q.40.001364
ORF7a104V104delGTT---220.111111
ORF7a104V104GgTtgGt120.055556
ORF7a104V104GgTTgGA120.055556
ORF7a104V104delGTT---22A.2.50.000998
ORF7a104V104delGTT---22A.280.005291
ORF7a104V104CGTtTGt22All0
ORF7a104V104KGTTAAA22All0
ORF7a104V104VgtTgtA22AY.1020.000053
ORF7a104V104delGTT---22AY.1080.002205
ORF7a104V104FGttTtt22AY.1140.000462
ORF7a104V104LGttCtt22AY.1180.000125
ORF7a104V104delGTT---22AY.120.000632
ORF7a104V104FGttTtt22AY.1200.000074
ORF7a104V104delGTT---22AY.130.000322
ORF7a104V104del2gTTg--22AY.140.000176
ORF7a104V104delGTT---22AY.160.000759
ORF7a104V104delGTT---22AY.16.10.00094
ORF7a104V104AgTtgCt22AY.200.000078
ORF7a104V104FGttTtt22AY.230.000139
ORF7a104V104FGttTtt22AY.240.000862
ORF7a104V104del2gTTg--22AY.250.000012
ORF7a104V104FGttTtt22AY.29.10.000441
ORF7a104V104del1Gtt-tt22AY.300.000791
ORF7a104V104FGttTtt22AY.34.10.00102
ORF7a104V104delGTT---22AY.380.000999
ORF7a104V104LGttCtt22AY.390.000049
ORF7a104V104del1Gtt-tt22AY.390.000049
ORF7a104V104del2gTTg--22AY.40.000003
ORF7a104V104VgtTgtC12AY.420.00004
ORF7a104V104VgtTgtA12AY.420.00004
ORF7a104V104delGTT---22AY.46.10.002053
ORF7a104V104delGTT---22AY.46.50.000397
ORF7a104V104FGttTtt22AY.46.60.000144
ORF7a104V104AgTtgCt22AY.46.60.000144
ORF7a104V104VgtTgtA22AY.50.000041
ORF7a104V104delGTT---22AY.5.40.000553
ORF7a104V104del1Gtt-tt22AY.540.000191
ORF7a104V104del2gTTg--22AY.540.000191
ORF7a104V104IGttAtt22AY.540.000191
ORF7a104V104FGttTtt22AY.550.001835
ORF7a104V104FGttTtt22AY.580.001815
ORF7a104V104del1Gtt-tt22AY.60.000082
ORF7a104V104delGTT---22AY.600.001876
ORF7a104V104LGttCtt22AY.610.00021
ORF7a104V104FGttTtt22AY.740.000231
ORF7a104V104VgtTgtA12AY.750.000056
ORF7a104V104VgtTgtC12AY.750.000056
ORF7a104V104FGttTtt22AY.75.10.000361
ORF7a104V104del1Gtt-tt22AY.90.000135
ORF7a104V104FGttTtt22AY.99.10.003106
ORF7a104V104delGTT---22AZ.60.016807
ORF7a104V104delGTT---22B0.000256
ORF7a104V104AgTtgCt22B.10.000018
ORF7a104V104FGttTtt22B.1.1.1330.016949
ORF7a104V104delGTT---22B.1.1.1550.142857
ORF7a104V104FGttTtt22B.1.1.2220.000408
ORF7a104V104FGttTtt22B.1.1.250.001137
ORF7a104V104FGttTtt22B.1.1.3050.007722
ORF7a104V104delGTT---22B.1.1.3170.000823
ORF7a104V104IGttAtt22B.1.1.3260.003521
ORF7a104V104delGTT---22B.1.1.330.000842
ORF7a104V104FGttTtt22B.1.1.3540.008772
ORF7a104V104delGTT---22B.1.1.4490.045455
ORF7a104V104DgTtgAt22B.1.1.70.000002
ORF7a104V104del2GTT--N12B.1.1.70.000001
ORF7a104V104del2gTTg--12B.1.1.70.000001
ORF7a104V104IGttAtt22B.1.1.700.000682
ORF7a104V104AgTtgCt22B.1.1600.000062
ORF7a104V104delGTT---22B.1.177.120.000303
ORF7a104V104delGTT---22B.1.177.450.000762
ORF7a104V104FGttTtt22B.1.177.540.001213
ORF7a104V104delGTT---22B.1.177.570.000562
ORF7a104V104delGTT---22B.1.177.600.000437
ORF7a104V104VgtTgtA22B.1.177.710.020202
ORF7a104V104FGttTtt22B.1.1950.01005
ORF7a104V104LGttCtt22B.1.20.000018
ORF7a104V104DgTtgAt22B.1.2210.000142
ORF7a104V104VgtTgtC22B.1.2210.000142
ORF7a104V104delGTT---22B.1.2400.000431
ORF7a104V104delGTT---22B.1.2580.000133
ORF7a104V104delGTT---22B.1.258.110.000793
ORF7a104V104delGTT---22B.1.3110.000549
ORF7a104V104delGTT---22B.1.3500.005865
ORF7a104V104VgtTgtA12B.1.3510.00003
ORF7a104V104IGtTAtA12B.1.3510.00003
ORF7a104V104IGttAtt12B.1.3510.00003
ORF7a104V104VgtTgtG12B.1.3510.00003
ORF7a104V104FGttTtt22B.1.3660.009756
ORF7a104V104FGttTtt22B.1.3690.00057
ORF7a104V104AgTtgCt22B.1.5250.000226
ORF7a104V104FGttTtt22B.1.5260.000047
ORF7a104V104delGTT---22B.1.575.10.004878
ORF7a104V104FGttTtt22B.1.5770.001375
ORF7a104V104delGTT---22B.1.5770.001375
ORF7a104V104delGTT---22B.1.6120.005305
ORF7a104V104VgtTgtA22B.1.617.10.000258
ORF7a104V104delGTT---22B.1.621.10.001012
ORF7a104V104FGttTtt22B.1.6370.000146
ORF7a104V104FGttTtt22B.1.9.50.011364
ORF7a104V104FGttTtt22B.400.000729
ORF7a104V104FGttTtt22D.20.00015
ORF7a104V104AgTtgCt22P.10.000032
ORF7a104V104delGTT---22Q.10.000253
ORF7a104V104FGttTtt22Q.80.00033
ORF7a104V104FGttTtt22R.10.00018
ORF7a104V104delGTT---22R.10.00018
ORF7a104V104KGTTAAA110.055556
ORF7a104V104RGTTAGA110.055556
ORF7a104V104FGttTtt110.055556
ORF7a104V104SGTtAGt110.055556
ORF7a104V104LGtTTtA110.055556
ORF7a104V104YGTtTAt110.055556
ORF7a104V104NGTtAAt110.055556
ORF7a104V104XGTTTAA110.055556
ORF7a104V104delGTT---11A0.000387
ORF7a104V104delGTT---11A.10.000282
ORF7a104V104FGttTtt11A.120.166667
ORF7a104V104delGTT---11A.2.20.001689
ORF7a104V104VgtTgtG11A.2.40.003367
ORF7a104V104FGttTtt11A.2.50.000499
ORF7a104V104delGTT---11A.230.010526
ORF7a104V104FGttTtt11A.280.002646
ORF7a104V104delGTT---11A.50.001923
ORF7a104V104AgTtgCt11A.60.005128
ORF7a104V104delGTT---11AH.30.003802
ORF7a104V104RGTTAGA11All0
ORF7a104V104XGTTTAA11All0
ORF7a104V104TGTtACt11All0
ORF7a104V104SGTtAGt11All0
ORF7a104V104FGttTtt11AU.10.001266
ORF7a104V104delGTT---11AW.10.003049
ORF7a104V104FGttTtt11AY.100.00053
ORF7a104V104delGTT---11AY.100.00053
ORF7a104V104FGttTtt11AY.1000.000046
ORF7a104V104delGTT---11AY.1010.00049
ORF7a104V104del2gTTg--11AY.1030.000006
ORF7a104V104del1Gtt-tt11AY.1070.000466
ORF7a104V104FGttTtt11AY.1080.001103
ORF7a104V104FGttTtt11AY.1090.00074
ORF7a104V104delGTT---11AY.1090.00074
ORF7a104V104delGTT---11AY.1100.000113
ORF7a104V104delGTT---11AY.1110.000183
ORF7a104V104FGttTtt11AY.1130.000142
ORF7a104V104del1Gtt-tt11AY.1130.000142
ORF7a104V104del1Gtt-tt11AY.1140.000231
ORF7a104V104FGttTtt11AY.1180.000063
ORF7a104V104del1Gtt-tt11AY.1190.000035
ORF7a104V104del1Gtt-tt11AY.1210.000135
ORF7a104V104del2gTTg--11AY.1210.000135
ORF7a104V104FGttTtt11AY.160.00038
ORF7a104V104AgTtgCt11AY.160.00038
ORF7a104V104FGttTtt11AY.20.000356
ORF7a104V104IGttAtt11AY.20.000356
ORF7a104V104VgtTgtA11AY.210.001898
ORF7a104V104GgTtgGt11AY.230.00007
ORF7a104V104FGttTtt11AY.23.10.000417
ORF7a104V104AgTtgCt11AY.250.000006
ORF7a104V104IGttAtt11AY.260.000028
ORF7a104V104VgtTgtC11AY.270.000065
ORF7a104V104del1Gtt-tt11AY.30.00001
ORF7a104V104LGttCtt11AY.330.000067
ORF7a104V104VgtTgtA11AY.330.000067
ORF7a104V104IGttAtt11AY.340.000097
ORF7a104V104delGTT---11AY.350.000233
ORF7a104V104FGttTtt11AY.350.000233
ORF7a104V104FGttTtt11AY.360.000148
ORF7a104V104YGTtTAt11AY.390.000025
ORF7a104V104VgtTgtA11AY.390.000025
ORF7a104V104IGttAtt11AY.390.000025
ORF7a104V104CGTtTGt11AY.40.000002
ORF7a104V104DgTtgAt11AY.40.000002
ORF7a104V104VgtTgtC11AY.4.20.000022
ORF7a104V104AgTtgCt11AY.4.20.000022
ORF7a104V104IGttAtt11AY.4.20.000022
ORF7a104V104FGttTtt11AY.4.2.10.000149
ORF7a104V104IGttAtt11AY.4.2.10.000149
ORF7a104V104FGttTtt11AY.4.40.000409
ORF7a104V104del1Gtt-tt11AY.410.000294
ORF7a104V104del1Gtt-tt11AY.420.00004
ORF7a104V104IGttAtt11AY.420.00004
ORF7a104V104LGttCtt11AY.430.000004
ORF7a104V104DgTtgAt11AY.430.000004
ORF7a104V104GgTtgGt11AY.430.000004
ORF7a104V104IGttAtt11AY.460.000104
ORF7a104V104FGttTtt11AY.46.20.000635
ORF7a104V104FGttTtt11AY.46.30.000934
ORF7a104V104FGttTtt11AY.46.40.000165
ORF7a104V104VgtTgtC11AY.470.000031
ORF7a104V104delGTT---11AY.490.003195
ORF7a104V104AgTtgCt11AY.50.000021
ORF7a104V104IGttAtt11AY.50.000021
ORF7a104V104del2gTTg--11AY.5.30.000337
ORF7a104V104delGTT---11AY.5.30.000337
ORF7a104V104FGttTtt11AY.510.000909
ORF7a104V104FGttTtt11AY.520.000814
ORF7a104V104VgtTgtA11AY.540.000095
ORF7a104V104IGttAtt11AY.590.00053
ORF7a104V104delGTT---11AY.590.00053
ORF7a104V104del2gTTg--11AY.590.00053
ORF7a104V104VgtTgtC11AY.60.000041
ORF7a104V104IGttAtt11AY.610.000105
ORF7a104V104FGttTtt11AY.620.000436
ORF7a104V104FGttTtt11AY.640.000595
ORF7a104V104del1Gtt-tt11AY.650.000533
ORF7a104V104VgtTgtC11AY.680.000274
ORF7a104V104FGttTtt11AY.70.000196
ORF7a104V104FGttTtt11AY.7.10.000113
ORF7a104V104delGTT---11AY.7.10.000113
ORF7a104V104del1Gtt-tt11AY.7.10.000113
ORF7a104V104del1Gtt-tt11AY.7.20.000559
ORF7a104V104FGttTtt11AY.700.000209
ORF7a104V104VgtTgtC11AY.700.000209
ORF7a104V104VgtTgtA11AY.710.000475
ORF7a104V104delGTT---11AY.710.000475
ORF7a104V104LGttCtt11AY.750.000056
ORF7a104V104AgTtgCt11AY.750.000056
ORF7a104V104IGttAtt11AY.750.000056
ORF7a104V104IGttAtt11AY.75.10.00018
ORF7a104V104delGTT---11AY.850.000427
ORF7a104V104delGTT---11AY.870.000833
ORF7a104V104LGttCtt11AY.9.10.000084
ORF7a104V104AgTtgCt11AY.9.10.000084
ORF7a104V104VgtTgtC11AY.920.000287
ORF7a104V104delGTT---11AY.930.000273
ORF7a104V104delGTT---11AY.960.002075
ORF7a104V104delGTT---11AY.980.000079
ORF7a104V104VgtTgtC11AY.980.000079
ORF7a104V104IGttAtt11AY.98.10.000048
ORF7a104V104AgTtgCt11AY.98.10.000048
ORF7a104V104delGTT---11AY.99.10.001553
ORF7a104V104AgTtgCt11AY.99.20.000092
ORF7a104V104delGTT---11AZ.20.000821
ORF7a104V104LGttCtt11B.10.000009
ORF7a104V104del1Gtt-tt11B.10.000009
ORF7a104V104AgTtgCt11B.1.10.000018
ORF7a104V104DgTtgAt11B.1.10.000018
ORF7a104V104NGTtAAt11B.1.10.000018
ORF7a104V104LGttCtt11B.1.10.000018
ORF7a104V104IGttAtt11B.1.1.1210.002427
ORF7a104V104delGTT---11B.1.1.1210.002427
ORF7a104V104delGTT---11B.1.1.1320.014925
ORF7a104V104AgTtgCt11B.1.1.1530.001095
ORF7a104V104FGttTtt11B.1.1.1570.000913
ORF7a104V104FGttTtt11B.1.1.1610.003534
ORF7a104V104IGttAtt11B.1.1.1760.000439
ORF7a104V104IGtTAtA11B.1.1.1890.001513
ORF7a104V104del1Gtt-tt11B.1.1.1940.00495
ORF7a104V104AgTtgCt11B.1.1.1980.001468
ORF7a104V104FGttTtt11B.1.1.2410.00207
ORF7a104V104delGTT---11B.1.1.2580.003257
ORF7a104V104DgTtgAt11B.1.1.2580.003257
ORF7a104V104delGTT---11B.1.1.2650.003155
ORF7a104V104delGTT---11B.1.1.2740.005051
ORF7a104V104delGTT---11B.1.1.2770.000759
ORF7a104V104FGttTtt11B.1.1.280.000311
ORF7a104V104VgtTgtC11B.1.1.280.000311
ORF7a104V104delGTT---11B.1.1.2800.003086
ORF7a104V104IGtTAtA11B.1.1.2820.011628
ORF7a104V104VgtTgtC11B.1.1.3060.000438
ORF7a104V104delGTT---11B.1.1.3120.001912
ORF7a104V104FGttTtt11B.1.1.3150.008475
ORF7a104V104delGTT---11B.1.1.3160.000925
ORF7a104V104FGttTtt11B.1.1.3180.000302
ORF7a104V104VgtTgtC11B.1.1.3180.000302
ORF7a104V104FGttTtt11B.1.1.3290.003846
ORF7a104V104delGTT---11B.1.1.3310.011628
ORF7a104V104VgtTgtA11B.1.1.3330.001076
ORF7a104V104FGttTtt11B.1.1.3350.012987
ORF7a104V104delGTT---11B.1.1.3690.000446
ORF7a104V104FGttTtt11B.1.1.3690.000446
ORF7a104V104delGTT---11B.1.1.390.00051
ORF7a104V104VgtTgtC11B.1.1.4090.002833
ORF7a104V104delGTT---11B.1.1.4110.014706
ORF7a104V104VgtTgtG11B.1.1.4110.014706
ORF7a104V104FGttTtt11B.1.1.4160.000905
ORF7a104V104delGTT---11B.1.1.4340.000349
ORF7a104V104delGTT---11B.1.1.4370.010417
ORF7a104V104delGTT---11B.1.1.4480.002033
ORF7a104V104FGttTtt11B.1.1.4660.008696
ORF7a104V104IGttAtt11B.1.1.4850.016667
ORF7a104V104del1Gtt-tt11B.1.1.4860.001577
ORF7a104V104FGttTtt11B.1.1.500.000679
ORF7a104V104FGttTtt11B.1.1.5180.006329
ORF7a104V104del1Gtt-tt11B.1.1.5190.00004
ORF7a104V104delGTT---11B.1.1.700.000341
ORF7a104V104delGTT---11B.1.1150.021739
ORF7a104V104delGTT---11B.1.1390.000733
ORF7a104V104GgTtgGt11B.1.1770.000013
ORF7a104V104del1Gtt-tt11B.1.1770.000013
ORF7a104V104LGttCtt11B.1.1770.000013
ORF7a104V104delGTT---11B.1.177.160.000664
ORF7a104V104delGTT---11B.1.177.210.000076
ORF7a104V104IGttAtt11B.1.177.230.003236
ORF7a104V104FGttTtt11B.1.177.240.001295
ORF7a104V104FGttTtt11B.1.177.350.000691
ORF7a104V104FGttTtt11B.1.177.420.000894
ORF7a104V104FGttTtt11B.1.177.440.000519
ORF7a104V104delGTT---11B.1.177.440.000519
ORF7a104V104delGTT---11B.1.177.500.004695
ORF7a104V104FGttTtt11B.1.177.560.000668
ORF7a104V104VgtTgtC11B.1.177.570.000281
ORF7a104V104delGTT---11B.1.177.620.001192
ORF7a104V104del1Gtt-tt11B.1.177.690.001484
ORF7a104V104delGTT---11B.1.177.800.001912
ORF7a104V104FGttTtt11B.1.177.830.001481
ORF7a104V104AgTtgCt11B.1.20.000009
ORF7a104V104delGTT---11B.1.214.20.0006
ORF7a104V104IGttAtt11B.1.214.20.0006
ORF7a104V104YGTtTAt11B.1.2210.000071
ORF7a104V104CGTtTGt11B.1.2210.000071
ORF7a104V104GgTtgGt11B.1.2210.000071
ORF7a104V104del1gtTgt-11B.1.2210.000071
ORF7a104V104del2gTTg--11B.1.2210.000071
ORF7a104V104FGttTtt11B.1.2320.000537
ORF7a104V104FGttTtt11B.1.2340.000132
ORF7a104V104VgtTgtC11B.1.2340.000132
ORF7a104V104LGttCtt11B.1.2340.000132
ORF7a104V104delGTT---11B.1.2350.002519
ORF7a104V104FGttTtt11B.1.2350.002519
ORF7a104V104FGttTtt11B.1.2360.002053
ORF7a104V104FGttTtt11B.1.2390.001221
ORF7a104V104FGttTtt11B.1.2400.000216
ORF7a104V104IGttAtt11B.1.2400.000216
ORF7a104V104FGttTtt11B.1.2410.000812
ORF7a104V104IGtTAtA11B.1.2420.018868
ORF7a104V104IGttAtt11B.1.2580.000067
ORF7a104V104KGTTAAA11B.1.258.90.005
ORF7a104V104delGTT---11B.1.2650.001271
ORF7a104V104delGTT---11B.1.3060.005714
ORF7a104V104FGttTtt11B.1.3090.047619
ORF7a104V104FGttTtt11B.1.3110.000275
ORF7a104V104AgTtgCt11B.1.3360.002439
ORF7a104V104FGttTtt11B.1.351.20.000303
ORF7a104V104IGtTAtA11B.1.360.000146
ORF7a104V104IGtTAtA11B.1.36.10.00114
ORF7a104V104delGTT---11B.1.36.200.016949
ORF7a104V104delGTT---11B.1.3620.001541
ORF7a104V104delGTT---11B.1.3710.001122
ORF7a104V104delGTT---11B.1.3750.00082
ORF7a104V104NGTtAAt11B.1.4160.001269
ORF7a104V104LGttCtt11B.1.4270.00005
ORF7a104V104IGtTAtA11B.1.4380.006536
ORF7a104V104FGttTtt11B.1.438.10.000107
ORF7a104V104delGTT---11B.1.4590.004082
ORF7a104V104FGttTtt11B.1.466.20.000391
ORF7a104V104delGTT---11B.1.466.20.000391
ORF7a104V104delGTT---11B.1.4680.005714
ORF7a104V104delGTT---11B.1.4700.001404
ORF7a104V104delGTT---11B.1.5030.002488
ORF7a104V104delGTT---11B.1.5170.000427
ORF7a104V104IGttAtt11B.1.5250.000113
ORF7a104V104del2gTTg--11B.1.5260.000024
ORF7a104V104del1Gtt-tt11B.1.5260.000024
ORF7a104V104delGTT---11B.1.5270.003704
ORF7a104V104FGttTtt11B.1.5380.008065
ORF7a104V104VgtTgtC11B.1.5510.00129
ORF7a104V104FGttTtt11B.1.5640.000426
ORF7a104V104FGttTtt11B.1.5650.00081
ORF7a104V104del1Gtt-tt11B.1.5750.000303
ORF7a104V104AgTtgCt11B.1.5950.000261
ORF7a104V104VgtTgtC11B.1.5950.000261
ORF7a104V104FGttTtt11B.1.5950.000261
ORF7a104V104TGTtACt11B.1.5950.000261
ORF7a104V104IGttAtt11B.1.5960.000087
ORF7a104V104FGttTtt11B.1.6020.006536
ORF7a104V104FGttTtt11B.1.6120.002653
ORF7a104V104GgTtgGt11B.1.617.20.000004
ORF7a104V104VgtTgtC11B.1.6210.000089
ORF7a104V104del1Gtt-tt11B.1.6210.000089
ORF7a104V104del1Gtt-tt11B.1.621.10.000506
ORF7a104V104del1Gtt-tt11B.1.6370.000073
ORF7a104V104LGttCtt11B.1.780.008547
ORF7a104V104FGttTtt11B.1.830.015385
ORF7a104V104IGttAtt11B.1.930.000934
ORF7a104V104delGTT---11B.120.00641
ORF7a104V104delGTT---11B.30.000831
ORF7a104V104delGTT---11B.400.000364
ORF7a104V104VgtTgtG11B.410.008
ORF7a104V104FGttTtt11C.350.000774
ORF7a104V104VgtTgtC11C.350.000774
ORF7a104V104VgtTgtC11D.20.000075
ORF7a104V104delGTT---11N.50.001767
ORF7a104V104delGTT---11N.60.007092
ORF7a104V104del1Gtt-tt11P.10.000016
ORF7a104V104IGttAtt11P.10.000016
ORF7a104V104delGTT---11P.1.10.000318
ORF7a104V104FGttTtt11P.1.100.000269
ORF7a104V104delGTT---11P.1.120.000484
ORF7a104V104IGttAtt11P.1.140.000048
ORF7a104V104del1GtT-tG11P.1.140.000048
ORF7a104V104delGTT---11P.1.160.000374
ORF7a104V104delGTT---11P.1.170.000162
ORF7a104V104IGttAtt11P.1.170.000162
ORF7a104V104delGTT---11P.1.40.000977
ORF7a104V104FGttTtt11P.1.70.000319
ORF7a104V104VgtTgtA11Q.10.000126
ORF7a104V104FGttTtt11Q.10.000126
ORF7a104V104delGTT---11Q.20.000613
ORF7a104V104FGttTtt11Q.30.000145
ORF7a104V104VgtTgtC11Q.70.001111
ORF7a104V104del1Gtt-tt11W.40.001351