CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 102

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a102L102deldelCTT---94679467127697-27699
ORF7a102L102FnonsynCttTtt106610640.99812427697-27699
ORF7a102L102FnonsynCtTTtC106620.0018761727697-27699
ORF7a102L102del1delCtt-tt7597140.94071127697-27699
ORF7a102L102del1delctTct-759370.048748427697-27699
ORF7a102L102del1delCtT-tN75930.0039525727697-27699
ORF7a102L102del1delCtTTt-75930.0039525727697-27699
ORF7a102L102del1delCTT-NN75920.0026350527697-27699
ORF7a102L102PnonsyncTtcCt2542510.98818927697-27699
ORF7a102L102PnonsyncTTcCA25420.0078740227697-27699
ORF7a102L102PnonsyncTTcCC25410.0039370127697-27699
ORF7a102L102LsynctTctC1621380.85185227697-27699
ORF7a102L102LsynctTctA162130.080246927697-27699
ORF7a102L102LsynctTctG16260.03703727697-27699
ORF7a102L102LsynCtTTtG16240.024691427697-27699
ORF7a102L102LsynCtTTtA16210.0061728427697-27699
ORF7a102L102InonsynCttAtt71670.94366227697-27699
ORF7a102L102InonsynCtTAtA7140.05633827697-27699
ORF7a102L102VnonsynCttGtt2929127697-27699
ORF7a102L102RnonsyncTtcGt2323127697-27699
ORF7a102L102del2delcTTc--19120.63157927697-27699
ORF7a102L102del2delCTt--t1970.36842127697-27699
ORF7a102L102HnonsyncTtcAt1414127697-27699
ORF7a102L102NnonsynCTtAAt99127697-27699
ORF7a102L102SnonsynCTTTCC760.85714327697-27699
ORF7a102L102KnonsynCTTAAG740.57142927697-27699
ORF7a102L102KnonsynCTTAAA730.42857127697-27699
ORF7a102L102SnonsynCTTTCA710.14285727697-27699
ORF7a102L102YnonsynCTtTAt650.83333327697-27699
ORF7a102L102YnonsynCTTTAC610.16666727697-27699
ORF7a102L102MnonsynCtTAtG55127697-27699
ORF7a102L102QnonsyncTTcAA44127697-27699
ORF7a102L102XnonsynCTTTAG44127697-27699
ORF7a102L102TnonsynCTtACt430.7527697-27699
ORF7a102L102TnonsynCTTACA410.2527697-27699
ORF7a102L102CnonsynCTtTGt11127697-27699

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a102L102delCTT---94679467All0.001811
ORF7a102L102delCTT---17641764B.1.1.70.001579
ORF7a102L102delCTT---11361136AY.39.1.10.823188
ORF7a102L102FCttTtt10641066All0.000204
ORF7a102L102FCtTTtC21066All0
ORF7a102L102delCTT---877877AY.40.001365
ORF7a102L102delCTT---800800AY.250.004812
ORF7a102L102del1Ctt-tt714759All0.000137
ORF7a102L102del1ctTct-37759All0.000007
ORF7a102L102del1CtT-tN3759All0.000001
ORF7a102L102del1CtTTt-3759All0.000001
ORF7a102L102del1CTT-NN2759All0
ORF7a102L102delCTT---570570B.1.617.20.002146
ORF7a102L102delCTT---337337AY.1020.008935
ORF7a102L102FCttTtt308310B.1.1.70.000276
ORF7a102L102FCtTTtC2310B.1.1.70.000002
ORF7a102L102delCTT---292292AY.430.001294
ORF7a102L102delCTT---279279AY.39.10.011052
ORF7a102L102delCTT---259259AY.750.01451
ORF7a102L102PcTtcCt251254All0.000048
ORF7a102L102PcTTcCA2254All0
ORF7a102L102PcTTcCC1254All0
ORF7a102L102delCTT---246246AY.440.001497
ORF7a102L102delCTT---195195AY.1030.001211
ORF7a102L102delCTT---179179AY.4.20.003882
ORF7a102L102del1Ctt-tt164168AY.40.000255
ORF7a102L102del1ctTct-4168AY.40.000006
ORF7a102L102LctTctC138162All0.000026
ORF7a102L102LctTctA13162All0.000002
ORF7a102L102LctTctG6162All0.000001
ORF7a102L102LCtTTtG4162All0.000001
ORF7a102L102LCtTTtA1162All0
ORF7a102L102delCTT---161161AY.30.001601
ORF7a102L102PcTtcCt130130AY.1190.00459
ORF7a102L102delCTT---112112AY.330.007479
ORF7a102L102del1Ctt-tt99107B.1.1.70.000089
ORF7a102L102del1ctTct-7107B.1.1.70.000006
ORF7a102L102del1CTT-NN1107B.1.1.70.000001
ORF7a102L102delCTT---9797AY.390.002397
ORF7a102L102delCTT---8989B.10.000815
ORF7a102L102del1Ctt-tt8181AY.1200.003011
ORF7a102L102delCTT---7777P.1.100.020749
ORF7a102L102delCTT---7575B.1.20.00066
ORF7a102L102ICttAtt6771All0.000013
ORF7a102L102ICtTAtA471All0.000001
ORF7a102L102delCTT---7070P.10.001103
ORF7a102L102FCttTtt6969AY.250.000415
ORF7a102L102delCTT---6969AY.290.001088
ORF7a102L102delCTT---6969AY.460.007182
ORF7a102L102delCTT---6767AY.50.001383
ORF7a102L102del1Ctt-tt6666B.1.6280.023256
ORF7a102L102delCTT---6363AY.46.40.010364
ORF7a102L102del1Ctt-tt5862B.1.617.20.000218
ORF7a102L102del1ctTct-362B.1.617.20.000011
ORF7a102L102del1CtT-tN162B.1.617.20.000004
ORF7a102L102delCTT---5454B.1.6210.00478
ORF7a102L102delCTT---5252AY.1200.001933
ORF7a102L102delCTT---4747AY.260.001331
ORF7a102L102delCTT---4747B.1.1770.000619
ORF7a102L102FCttTtt4545AY.7.10.005072
ORF7a102L102delCTT---4444B.1.1.5190.001747
ORF7a102L102delCTT---4343B.1.5260.001011
ORF7a102L102LctTctC4040AY.40.000062
ORF7a102L102delCTT---4040AY.470.001244
ORF7a102L102delCTT---3939AY.70.007644
ORF7a102L102delCTT---3737AY.1180.002318
ORF7a102L102LctTctC3637B.1.1.70.000032
ORF7a102L102LctTctG137B.1.1.70.000001
ORF7a102L102FCttTtt3737B.1.3510.0011
ORF7a102L102delCTT---3535AY.360.005187
ORF7a102L102delCTT---3434AY.740.003932
ORF7a102L102delCTT---3434B.1.10.000617
ORF7a102L102FCttTtt3333B.1.20.000291
ORF7a102L102FCttTtt3232P.10.000504
ORF7a102L102VCttGtt2929All0.000006
ORF7a102L102FCttTtt2929B.1.4290.000682
ORF7a102L102FCttTtt2828B.1.617.20.000105
ORF7a102L102delCTT---2727AY.530.007763
ORF7a102L102delCTT---2626AY.1190.000918
ORF7a102L102del1Ctt-tt2526AY.250.00015
ORF7a102L102del1ctTct-126AY.250.000006
ORF7a102L102delCTT---2525AY.1000.00115
ORF7a102L102delCTT---2525AY.420.001006
ORF7a102L102PcTtcCt2425B.1.1.70.000021
ORF7a102L102PcTTcCC125B.1.1.70.000001
ORF7a102L102FCttTtt2424B.1.1770.000316
ORF7a102L102del1ctTct-1324B.1.5260.000306
ORF7a102L102del1Ctt-tt1124B.1.5260.000259
ORF7a102L102RcTtcGt2323All0.000004
ORF7a102L102delCTT---2222B.1.1.2140.00122
ORF7a102L102del1Ctt-tt2222B.1.3250.151724
ORF7a102L102delCTT---2222B.1.4270.001111
ORF7a102L102delCTT---2121AY.9.10.001758
ORF7a102L102FCttTtt2121Q.10.002653
ORF7a102L102FCttTtt2020AY.40.000031
ORF7a102L102delCTT---2020AY.7.20.011186
ORF7a102L102delCTT---2020B.1.36.390.044346
ORF7a102L102del2cTTc--1219All0.000002
ORF7a102L102del2CTt--t719All0.000001
ORF7a102L102FCttTtt1919AY.1110.00348
ORF7a102L102FCttTtt1919AY.30.000189
ORF7a102L102delCTT---1919AY.90.001284
ORF7a102L102FCttTtt1919AY.920.005458
ORF7a102L102FCttTtt1919B.1.5960.001656
ORF7a102L102PcTtcCt1818AY.40.000028
ORF7a102L102del1Ctt-tt1718AY.440.000103
ORF7a102L102del1CtTTt-118AY.440.000006
ORF7a102L102delCTT---1818B.1.3510.000535
ORF7a102L102delCTT---1717AY.1210.0023
ORF7a102L102delCTT---1616AY.46.10.016427
ORF7a102L102del1Ctt-tt1616AY.950.012177
ORF7a102L102ICttAtt1616B.1.6370.001169
ORF7a102L102delCTT---1515AY.340.001454
ORF7a102L102PcTtcCt1515AY.470.000467
ORF7a102L102ICttAtt1515B.1.1.70.000013
ORF7a102L102HcTtcAt1414All0.000003
ORF7a102L102del1Ctt-tt1014AY.1020.000265
ORF7a102L102del1ctTct-314AY.1020.00008
ORF7a102L102del1CtT-tN114AY.1020.000027
ORF7a102L102delCTT---1414AY.9.20.000514
ORF7a102L102FCttTtt1414B.10.000128
ORF7a102L102delCTT---1414B.1.1.370.0027
ORF7a102L102delCTT---1313AY.1130.001851
ORF7a102L102delCTT---1313AY.60.000535
ORF7a102L102delCTT---1313AY.98.10.00063
ORF7a102L102delCTT---1313AY.99.20.001198
ORF7a102L102delCTT---1313B.1.1600.000405
ORF7a102L102FCttTtt1313B.1.1600.000405
ORF7a102L102LctTctC1313B.1.177.210.000994
ORF7a102L102delCTT---1313B.1.177.620.015495
ORF7a102L102delCTT---1313C.370.001509
ORF7a102L102delCTT---1212AY.1110.002198
ORF7a102L102delCTT---1212AY.120.10.003852
ORF7a102L102del1Ctt-tt1212AY.430.000053
ORF7a102L102delCTT---1212AY.850.005126
ORF7a102L102delCTT---1212B.1.6370.000877
ORF7a102L102del1Ctt-tt1111AY.260.000311
ORF7a102L102delCTT---1111AY.910.008035
ORF7a102L102FCttTtt1111B.1.6370.000804
ORF7a102L102FCttTtt1010AY.1020.000265
ORF7a102L102delCTT---1010AY.450.001217
ORF7a102L102FCttTtt1010B.1.10.000181
ORF7a102L102FCttTtt1010B.1.177.420.008945
ORF7a102L102delCTT---1010B.1.2340.001319
ORF7a102L102delCTT---1010B.1.2430.000696
ORF7a102L102FCttTtt1010B.1.3690.002852
ORF7a102L102NCTtAAt99All0.000002
ORF7a102L102del1Ctt-tt99AY.1180.000564
ORF7a102L102delCTT---99AY.160.003417
ORF7a102L102delCTT---99AY.230.000628
ORF7a102L102FCttTtt99AY.260.000255
ORF7a102L102delCTT---99AY.3.10.000767
ORF7a102L102FCttTtt99AY.430.00004
ORF7a102L102delCTT---99AY.46.60.00065
ORF7a102L102FCttTtt99B.1.177.860.001651
ORF7a102L102del1Ctt-tt99B.1.20.000079
ORF7a102L102delCTT---99B.1.4290.000212
ORF7a102L102PcTtcCt88AY.1030.00005
ORF7a102L102FCttTtt88AY.140.000704
ORF7a102L102delCTT---88AY.200.000311
ORF7a102L102FCttTtt88AY.470.000249
ORF7a102L102del1Ctt-tt88AY.700.001668
ORF7a102L102delCTT---88B0.001022
ORF7a102L102delCTT---88B.1.1.2840.000859
ORF7a102L102delCTT---88B.1.1.3180.002414
ORF7a102L102del2cTTc--58B.1.1.70.000004
ORF7a102L102del2CTt--t38B.1.1.70.000003
ORF7a102L102FCttTtt88B.1.177.830.011852
ORF7a102L102ICttAtt470.222222
ORF7a102L102ICtTAtA370.166667
ORF7a102L102SCTTTCC67All0.000001
ORF7a102L102KCTTAAG47All0.000001
ORF7a102L102KCTTAAA37All0.000001
ORF7a102L102SCTTTCA17All0
ORF7a102L102delCTT---77AY.1170.000592
ORF7a102L102del1Ctt-tt77AY.1190.000247
ORF7a102L102delCTT---77AY.29.10.001544
ORF7a102L102SCTTTCC67AY.40.000009
ORF7a102L102SCTTTCA17AY.40.000002
ORF7a102L102delCTT---77AY.540.000667
ORF7a102L102delCTT---77AY.860.005809
ORF7a102L102delCTT---77B.1.160.160.006506
ORF7a102L102delCTT---77B.1.2210.000497
ORF7a102L102delCTT---77B.1.2400.001509
ORF7a102L102delCTT---77B.1.5250.000792
ORF7a102L102delCTT---77D.20.000525
ORF7a102L102FCttTtt77L.30.024823
ORF7a102L102RcTtcGt66A0.002322
ORF7a102L102delCTT---66AD.20.001314
ORF7a102L102YCTtTAt56All0.000001
ORF7a102L102YCTTTAC16All0
ORF7a102L102delCTT---66AY.140.000528
ORF7a102L102delCTT---66AY.190.006842
ORF7a102L102delCTT---66AY.270.000388
ORF7a102L102del1Ctt-tt66AY.30.00006
ORF7a102L102PcTtcCt66AY.30.00006
ORF7a102L102del1Ctt-tt46AY.390.000099
ORF7a102L102del1CtT-tN16AY.390.000025
ORF7a102L102del1CTT-NN16AY.390.000025
ORF7a102L102FCttTtt66AY.440.000037
ORF7a102L102delCTT---66AY.46.50.00119
ORF7a102L102delCTT---66AY.680.001642
ORF7a102L102delCTT---66AY.980.000474
ORF7a102L102delCTT---66B.1.2580.000399
ORF7a102L102delCTT---66B.1.4220.004874
ORF7a102L102delCTT---66B.1.617.10.000774
ORF7a102L102delCTT---66B.1.80.011834
ORF7a102L102FCttTtt66B.4.10.113208
ORF7a102L102delCTT---66P.1.10.001906
ORF7a102L102delCTT---66P.1.150.001394
ORF7a102L102FCttTtt66P.1.160.002245
ORF7a102L102delCTT---66Q.40.002729
ORF7a102L102FCttTtt66Q.80.000989
ORF7a102L102MCtTAtG55All0.000001
ORF7a102L102LctTctC55AY.1030.000031
ORF7a102L102FCttTtt55AY.1030.000031
ORF7a102L102PcTtcCt55AY.1130.000712
ORF7a102L102VCttGtt55AY.250.00003
ORF7a102L102delCTT---55AY.300.001979
ORF7a102L102delCTT---55AY.4.50.000537
ORF7a102L102LctTctC55AY.440.00003
ORF7a102L102delCTT---55AY.790.006053
ORF7a102L102FCttTtt55AY.840.002187
ORF7a102L102FCttTtt55AY.90.000338
ORF7a102L102delCTT---55B.1.1.4860.007886
ORF7a102L102VCttGtt55B.1.1.70.000004
ORF7a102L102delCTT---55B.1.177.600.001092
ORF7a102L102delCTT---55B.1.177.70.000824
ORF7a102L102RcTtcGt55B.1.3510.000149
ORF7a102L102FCttTtt55B.1.5250.000566
ORF7a102L102delCTT---55B.1.5960.000436
ORF7a102L102delCTT---55P.1.140.000239
ORF7a102L102delCTT---55P.20.000933
ORF7a102L102NCTtAAt440.222222
ORF7a102L102HcTtcAt440.222222
ORF7a102L102QcTTcAA44All0.000001
ORF7a102L102XCTTTAG44All0.000001
ORF7a102L102TCTtACt34All0.000001
ORF7a102L102TCTTACA14All0
ORF7a102L102del1Ctt-tt34AY.1030.000019
ORF7a102L102del1CtTTt-14AY.1030.000006
ORF7a102L102delCTT---44AY.1050.002572
ORF7a102L102PcTtcCt44AY.1060.00134
ORF7a102L102delCTT---44AY.120.001264
ORF7a102L102delCTT---44AY.130.000644
ORF7a102L102delCTT---44AY.210.00759
ORF7a102L102NCTtAAt44AY.260.000113
ORF7a102L102delCTT---44AY.350.000932
ORF7a102L102delCTT---44AY.5.30.00135
ORF7a102L102delCTT---44AY.7.10.000451
ORF7a102L102delCTT---44AY.730.002661
ORF7a102L102FCttTtt44AY.9.10.000335
ORF7a102L102del1Ctt-tt34B.10.000027
ORF7a102L102del1CtTTt-14B.10.000009
ORF7a102L102del1Ctt-tt44B.1.10.000073
ORF7a102L102PcTtcCt44B.1.1.5190.000159
ORF7a102L102delCTT---44B.1.177.860.000734
ORF7a102L102FCttTtt44B.1.2100.008529
ORF7a102L102FCttTtt44B.1.2210.000284
ORF7a102L102FCttTtt44B.1.2400.000862
ORF7a102L102FCttTtt44B.1.2430.000278
ORF7a102L102delCTT---44B.1.258.110.001585
ORF7a102L102delCTT---44B.1.258.170.000416
ORF7a102L102delCTT---44B.1.2870.121212
ORF7a102L102PcTtcCt44B.1.617.20.000015
ORF7a102L102LctTctC44B.1.617.20.000015
ORF7a102L102delCTT---44B.1.6280.001409
ORF7a102L102delCTT---44N.70.117647
ORF7a102L102ICttAtt44P.10.000063
ORF7a102L102del1Ctt-tt34P.10.000047
ORF7a102L102del1ctTct-14P.10.000016
ORF7a102L102delCTT---44P.1.170.000647
ORF7a102L102delCTT---44Q.10.000505
ORF7a102L102FCttTtt44Q.40.001819
ORF7a102L102del1Ctt-tt44Q.80.00066
ORF7a102L102delCTT---44Q.80.00066
ORF7a102L102QcTTcAA330.166667
ORF7a102L102LctTctA330.166667
ORF7a102L102KCTTAAA330.166667
ORF7a102L102LctTctC33AY.1020.00008
ORF7a102L102ICttAtt33AY.1030.000019
ORF7a102L102delCTT---33AY.1080.003308
ORF7a102L102delCTT---33AY.1160.00086
ORF7a102L102del1Ctt-tt33AY.20.001068
ORF7a102L102del1Ctt-tt33AY.230.000209
ORF7a102L102delCTT---33AY.240.001293
ORF7a102L102XCTTTAG33AY.260.000085
ORF7a102L102ICttAtt33AY.260.000085
ORF7a102L102YCTtTAt33AY.260.000085
ORF7a102L102LCtTTtG33AY.260.000085
ORF7a102L102KCTTAAG33AY.260.000085
ORF7a102L102MCtTAtG33AY.260.000085
ORF7a102L102FCttTtt33AY.290.000047
ORF7a102L102delCTT---33AY.370.000948
ORF7a102L102PcTtcCt33AY.39.10.000119
ORF7a102L102del1Ctt-tt33AY.4.20.000065
ORF7a102L102FCttTtt33AY.420.000121
ORF7a102L102delCTT---33AY.46.20.001906
ORF7a102L102LctTctC33AY.50.000062
ORF7a102L102del1Ctt-tt23AY.60.000082
ORF7a102L102del1ctTct-13AY.60.000041
ORF7a102L102delCTT---33AY.610.000314
ORF7a102L102delCTT---33AY.640.001786
ORF7a102L102VCttGtt33AY.75.10.000541
ORF7a102L102delCTT---33AY.75.10.000541
ORF7a102L102delCTT---33AY.990.003148
ORF7a102L102PcTtcCt33B.1.1.10.00098
ORF7a102L102FCttTtt33B.1.1.1530.003286
ORF7a102L102delCTT---33B.1.1.1700.003741
ORF7a102L102delCTT---33B.1.1.580.016129
ORF7a102L102RcTtcGt33B.1.1.70.000003
ORF7a102L102delCTT---33B.1.130.007126
ORF7a102L102PcTtcCt33B.1.1770.00004
ORF7a102L102FCttTtt33B.1.177.120.000455
ORF7a102L102delCTT---33B.1.177.570.000843
ORF7a102L102FCttTtt33B.1.214.20.001799
ORF7a102L102delCTT---33B.1.3110.000824
ORF7a102L102FCttTtt33B.1.3240.004815
ORF7a102L102delCTT---33B.1.351.20.000908
ORF7a102L102delCTT---33B.1.360.000438
ORF7a102L102delCTT---33B.1.36.170.001482
ORF7a102L102delCTT---33B.1.3890.003006
ORF7a102L102FCttTtt33B.1.4270.000151
ORF7a102L102FCttTtt33B.1.4970.000944
ORF7a102L102FCttTtt33B.1.5260.000071
ORF7a102L102delCTT---33B.1.5750.00091
ORF7a102L102FCttTtt33B.1.5950.000783
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ORF7a102L102del1Ctt-tt11B.1.6360.006711
ORF7a102L102del1Ctt-tt11B.1.6370.000073
ORF7a102L102delCTT---11B.1.6380.052632
ORF7a102L102delCTT---11B.120.00641
ORF7a102L102del1Ctt-tt11B.400.000364
ORF7a102L102delCTT---11B.400.000364
ORF7a102L102FCttTtt11C.160.00106
ORF7a102L102VCttGtt11C.2.10.006667
ORF7a102L102LctTctC11C.350.000774
ORF7a102L102FCttTtt11C.350.000774
ORF7a102L102delCTT---11C.360.000911
ORF7a102L102delCTT---11C.36.30.000567
ORF7a102L102LctTctC11D.20.000075
ORF7a102L102delCTT---11N.50.001767
ORF7a102L102LctTctC11P.10.000016
ORF7a102L102PcTtcCt11P.10.000016
ORF7a102L102delCTT---11P.1.120.000484
ORF7a102L102FCttTtt11P.1.120.000484
ORF7a102L102LCtTTtA11P.1.140.000048
ORF7a102L102FCttTtt11P.1.140.000048
ORF7a102L102del1Ctt-tt11P.1.150.000232
ORF7a102L102delCTT---11P.1.160.000374
ORF7a102L102FCttTtt11P.1.170.000162
ORF7a102L102delCTT---11P.1.40.000977
ORF7a102L102FCttTtt11P.1.60.001946
ORF7a102L102FCttTtt11P.1.70.000319
ORF7a102L102delCTT---11Q.20.000613
ORF7a102L102PcTtcCt11Q.80.000165
ORF7a102L102delCTT---11U.30.003861
ORF7a102L102delCTT---11W.40.001351
ORF7a102L102delCTT---11Y.10.012821