CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 101

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a101F101deldelTTT---97019701127694-27696
ORF7a101F101LnonsynTttCtt4513120.69179627694-27696
ORF7a101F101LnonsynttTttG451800.17738427694-27696
ORF7a101F101LnonsynttTttA451580.12860327694-27696
ORF7a101F101LnonsynTtTCtC45110.0022172927694-27696
ORF7a101F101del1delTtt-tt3181970.61949727694-27696
ORF7a101F101del1delttTtt-3181120.35220127694-27696
ORF7a101F101del1delTTT-NN31840.012578627694-27696
ORF7a101F101del1deltTTtC-31820.0062893127694-27696
ORF7a101F101del1delTTT-CG31820.0062893127694-27696
ORF7a101F101del1delTtT-tG31810.0031446527694-27696
ORF7a101F101CnonsyntTttGt2021940.96039627694-27696
ORF7a101F101CnonsyntTTtGC20280.03960427694-27696
ORF7a101F101del2delTTt--t107670.62616827694-27696
ORF7a101F101del2deltTTt--107370.34579427694-27696
ORF7a101F101del2delTTT--N10730.028037427694-27696
ORF7a101F101FsynttTttC9494127694-27696
ORF7a101F101SnonsyntTttCt80710.887527694-27696
ORF7a101F101SnonsyntTTtCC8050.062527694-27696
ORF7a101F101SnonsyntTTtCG8040.0527694-27696
ORF7a101F101InonsynTttAtt41400.9756127694-27696
ORF7a101F101InonsynTtTAtA4110.024390227694-27696
ORF7a101F101VnonsynTttGtt39380.97435927694-27696
ORF7a101F101VnonsynTtTGtA3910.02564127694-27696
ORF7a101F101YnonsyntTttAt650.83333327694-27696
ORF7a101F101YnonsyntTTtAC610.16666727694-27696
ORF7a101F101XnonsyntTTtAA430.7527694-27696
ORF7a101F101XnonsyntTTtGA410.2527694-27696
ORF7a101F101HnonsynTTtCAt320.66666727694-27696
ORF7a101F101TnonsynTTtACt320.66666727694-27696
ORF7a101F101TnonsynTTTACA310.33333327694-27696
ORF7a101F101HnonsynTTTCAC310.33333327694-27696
ORF7a101F101WnonsyntTTtGG22127694-27696
ORF7a101F101NnonsynTTtAAt22127694-27696
ORF7a101F101AnonsynTTTGCC210.527694-27696
ORF7a101F101AnonsynTTtGCt210.527694-27696
ORF7a101F101EnonsynTTTGAA11127694-27696
ORF7a101F101DnonsynTTtGAt11127694-27696
ORF7a101F101KnonsynTTTAAA11127694-27696
ORF7a101F101MnonsynTtTAtG11127694-27696
ORF7a101F101RnonsynTTTAGA11127694-27696

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a101F101delTTT---97019701All0.001855
ORF7a101F101delTTT---23372337B.1.1.70.002092
ORF7a101F101delTTT---10301030AY.39.1.10.746377
ORF7a101F101delTTT---10011001AY.40.001558
ORF7a101F101delTTT---609609AY.250.003663
ORF7a101F101delTTT---576576B.1.617.20.002169
ORF7a101F101LTttCtt312451All0.00006
ORF7a101F101LttTttG80451All0.000015
ORF7a101F101LttTttA58451All0.000011
ORF7a101F101LTtTCtC1451All0
ORF7a101F101delTTT---343343AY.1020.009094
ORF7a101F101del1Ttt-tt197318All0.000038
ORF7a101F101del1ttTtt-112318All0.000021
ORF7a101F101del1TTT-NN4318All0.000001
ORF7a101F101del1TTT-CG2318All0
ORF7a101F101del1tTTtC-2318All0
ORF7a101F101del1TtT-tG1318All0
ORF7a101F101delTTT---253253AY.750.014174
ORF7a101F101delTTT---248248AY.39.10.009824
ORF7a101F101delTTT---214214AY.440.001303
ORF7a101F101CtTttGt194202All0.000037
ORF7a101F101CtTTtGC8202All0.000002
ORF7a101F101delTTT---178178AY.4.20.003861
ORF7a101F101delTTT---178178AY.430.000789
ORF7a101F101delTTT---159159AY.30.001581
ORF7a101F101delTTT---150150AY.1030.000931
ORF7a101F101delTTT---131131AY.1200.00487
ORF7a101F101CtTttGt123123AY.250.00074
ORF7a101F101del1Ttt-tt122123B.1.6370.008915
ORF7a101F101del1ttTtt-1123B.1.6370.000073
ORF7a101F101LTttCtt73112B.1.1.70.000065
ORF7a101F101LttTttA28112B.1.1.70.000025
ORF7a101F101LttTttG11112B.1.1.70.00001
ORF7a101F101del2TTt--t67107All0.000013
ORF7a101F101del2tTTt--37107All0.000007
ORF7a101F101del2TTT--N3107All0.000001
ORF7a101F101delTTT---107107AY.330.007145
ORF7a101F101FttTttC9494All0.000018
ORF7a101F101delTTT---8585AY.390.0021
ORF7a101F101delTTT---8181B.1.20.000713
ORF7a101F101StTttCt7180All0.000014
ORF7a101F101StTTtCC580All0.000001
ORF7a101F101StTTtCG480All0.000001
ORF7a101F101LTttCtt7378AY.1030.000453
ORF7a101F101LttTttG578AY.1030.000031
ORF7a101F101delTTT---7272AY.290.001136
ORF7a101F101delTTT---7070AY.460.007286
ORF7a101F101delTTT---6868B.1.6280.023961
ORF7a101F101delTTT---6666P.10.00104
ORF7a101F101delTTT---6363AY.46.40.010364
ORF7a101F101delTTT---6363AY.50.001301
ORF7a101F101del2TTt--t4058B.1.1.70.000036
ORF7a101F101del2tTTt--1758B.1.1.70.000015
ORF7a101F101del2TTT--N158B.1.1.70.000001
ORF7a101F101delTTT---5858B.1.5260.001363
ORF7a101F101delTTT---5252AY.260.001472
ORF7a101F101CtTttGt5252AY.7.20.029083
ORF7a101F101delTTT---5252B.1.6210.004603
ORF7a101F101delTTT---4848B.10.00044
ORF7a101F101delTTT---4747B.1.1770.000619
ORF7a101F101delTTT---4545AY.1180.002819
ORF7a101F101delTTT---4444AY.90.002974
ORF7a101F101delTTT---4343AY.70.008428
ORF7a101F101del1Ttt-tt4343C.370.004991
ORF7a101F101ITttAtt4041All0.000008
ORF7a101F101ITtTAtA141All0
ORF7a101F101LTttCtt3740AY.250.000223
ORF7a101F101LttTttG240AY.250.000012
ORF7a101F101LttTttA140AY.250.000006
ORF7a101F101VTttGtt3839All0.000007
ORF7a101F101VTtTGtA139All0
ORF7a101F101delTTT---3939B.1.10.000707
ORF7a101F101delTTT---3636AY.360.005336
ORF7a101F101delTTT---3636AY.470.00112
ORF7a101F101delTTT---3434AY.740.003932
ORF7a101F101delTTT---3232AY.1190.00113
ORF7a101F101FttTttC3232B.1.1.70.000029
ORF7a101F101LTttCtt2829AY.30.000278
ORF7a101F101LttTttA129AY.30.00001
ORF7a101F101delTTT---2626AY.530.007476
ORF7a101F101delTTT---2424AY.420.000966
ORF7a101F101delTTT---2424B.1.1.2140.001331
ORF7a101F101delTTT---2222B.1.1.5190.000874
ORF7a101F101del1ttTtt-2222B.1.1.5190.000874
ORF7a101F101delTTT---2222B.1.3250.151724
ORF7a101F101delTTT---2222B.1.4270.001111
ORF7a101F101delTTT---2121AY.1000.000966
ORF7a101F101del1Ttt-tt1121AY.250.000066
ORF7a101F101del1ttTtt-1021AY.250.00006
ORF7a101F101delTTT---2121AY.7.20.011745
ORF7a101F101delTTT---2121AY.9.10.001758
ORF7a101F101LTttCtt1821B.1.20.000158
ORF7a101F101LttTttG321B.1.20.000026
ORF7a101F101del1ttTtt-1319B.1.1.70.000012
ORF7a101F101del1Ttt-tt419B.1.1.70.000004
ORF7a101F101del1TTT-CG219B.1.1.70.000002
ORF7a101F101delTTT---1919B.1.1600.000593
ORF7a101F101delTTT---1919B.1.3510.000565
ORF7a101F101delTTT---1717AD.20.003722
ORF7a101F101delTTT---1717AY.1210.0023
ORF7a101F101delTTT---1616AY.46.10.016427
ORF7a101F101delTTT---1616AY.60.000658
ORF7a101F101delTTT---1616AY.950.012177
ORF7a101F101del1ttTtt-1616B.10.000147
ORF7a101F101delTTT---1616B.1.1.2220.003264
ORF7a101F101delTTT---1515AY.340.001454
ORF7a101F101LTttCtt915B.1.617.20.000034
ORF7a101F101LttTttG315B.1.617.20.000011
ORF7a101F101LttTttA315B.1.617.20.000011
ORF7a101F101LttTttG914AY.40.000014
ORF7a101F101LTttCtt514AY.40.000008
ORF7a101F101delTTT---1414B.1.1.370.0027
ORF7a101F101delTTT---1414C.370.001625
ORF7a101F101StTttCt1313AY.430.000058
ORF7a101F101delTTT---1212AY.1130.001709
ORF7a101F101delTTT---1111AY.1110.002015
ORF7a101F101delTTT---1111AY.120.10.003531
ORF7a101F101delTTT---1111AY.230.000767
ORF7a101F101delTTT---1111AY.3.10.000938
ORF7a101F101CtTTtGC711AY.40.000011
ORF7a101F101CtTttGt411AY.40.000006
ORF7a101F101delTTT---1111AY.700.002294
ORF7a101F101delTTT---1111AY.9.20.000404
ORF7a101F101delTTT---1111AY.910.008035
ORF7a101F101delTTT---1111AY.98.10.000533
ORF7a101F101VTttGtt1111B.1.1.70.00001
ORF7a101F101delTTT---1111B.1.2340.001451
ORF7a101F101del1ttTtt-811B.1.617.20.00003
ORF7a101F101del1Ttt-tt311B.1.617.20.000011
ORF7a101F101delTTT---1111B.1.6370.000804
ORF7a101F101StTttCt1010AY.1030.000062
ORF7a101F101delTTT---1010AY.850.004272
ORF7a101F101delTTT---1010B.1.1.3180.003018
ORF7a101F101delTTT---1010B.1.2430.000696
ORF7a101F101delTTT---99AY.160.003417
ORF7a101F101del2tTTt--99AY.40.000014
ORF7a101F101LTttCtt69AY.430.000027
ORF7a101F101LttTttA39AY.430.000013
ORF7a101F101delTTT---99AY.99.20.000829
ORF7a101F101StTttCt99B.1.1.70.000008
ORF7a101F101delTTT---88AY.200.000311
ORF7a101F101delTTT---88AY.270.000518
ORF7a101F101del1ttTtt-88AY.40.000012
ORF7a101F101LttTttG78AY.440.000043
ORF7a101F101LttTttA18AY.440.000006
ORF7a101F101ITttAtt88B.1.1.70.000007
ORF7a101F101delTTT---88P.1.150.001859
ORF7a101F101delTTT---88R.10.00072
ORF7a101F101delTTT---77AY.1170.000592
ORF7a101F101StTttCt77AY.1190.000247
ORF7a101F101delTTT---77AY.190.007982
ORF7a101F101StTTtCC47AY.260.000113
ORF7a101F101StTTtCG37AY.260.000085
ORF7a101F101delTTT---77AY.29.10.001544
ORF7a101F101LttTttG67AY.390.000148
ORF7a101F101LttTttA17AY.390.000025
ORF7a101F101delTTT---77AY.540.000667
ORF7a101F101delTTT---77AY.860.005809
ORF7a101F101delTTT---77B0.000895
ORF7a101F101FttTttC77B.10.000064
ORF7a101F101delTTT---77B.1.1.2840.000752
ORF7a101F101delTTT---77B.1.160.160.006506
ORF7a101F101delTTT---77B.1.2210.000497
ORF7a101F101delTTT---77B.1.5250.000792
ORF7a101F101delTTT---77D.20.000525
ORF7a101F101YtTttAt56All0.000001
ORF7a101F101YtTTtAC16All0
ORF7a101F101ITttAtt66AY.1030.000037
ORF7a101F101delTTT---66AY.4.50.000645
ORF7a101F101delTTT---66AY.450.00073
ORF7a101F101delTTT---66AY.46.50.00119
ORF7a101F101delTTT---66AY.680.001642
ORF7a101F101delTTT---66AY.980.000474
ORF7a101F101delTTT---66B.1.177.170.004926
ORF7a101F101LttTttG66B.1.3510.000178
ORF7a101F101delTTT---66B.1.617.10.000774
ORF7a101F101delTTT---66P.1.10.001906
ORF7a101F101delTTT---66Q.80.000989
ORF7a101F101LTttCtt55AY.120.00158
ORF7a101F101delTTT---55AY.140.00044
ORF7a101F101del2tTTt--55AY.250.00003
ORF7a101F101LttTttG35AY.260.000085
ORF7a101F101LTttCtt25AY.260.000057
ORF7a101F101delTTT---55AY.790.006053
ORF7a101F101VTttGtt55AY.9.20.000184
ORF7a101F101CtTttGt55B.1.1.70.000004
ORF7a101F101delTTT---55B.1.177.600.001092
ORF7a101F101del2TTt--t55B.1.20.000044
ORF7a101F101LTttCtt55B.1.2340.00066
ORF7a101F101FttTttC55B.1.3890.00501
ORF7a101F101delTTT---55B.1.4290.000118
ORF7a101F101delTTT---55P.20.000933
ORF7a101F101delTTT---55Q.10.000632
ORF7a101F101LttTttA440.222222
ORF7a101F101XtTTtAA34All0.000001
ORF7a101F101XtTTtGA14All0
ORF7a101F101delTTT---44AY.1050.002572
ORF7a101F101delTTT---44AY.1140.000924
ORF7a101F101StTttCt44AY.1170.000338
ORF7a101F101delTTT---44AY.120.001264
ORF7a101F101del1Ttt-tt44AY.230.000279
ORF7a101F101delTTT---44AY.240.001724
ORF7a101F101StTttCt24AY.250.000012
ORF7a101F101StTTtCG14AY.250.000006
ORF7a101F101StTTtCC14AY.250.000006
ORF7a101F101delTTT---44AY.300.001583
ORF7a101F101delTTT---44AY.350.000932
ORF7a101F101FttTttC44AY.40.000006
ORF7a101F101del1ttTtt-34AY.450.000365
ORF7a101F101del1Ttt-tt14AY.450.000122
ORF7a101F101delTTT---44AY.46.60.000289
ORF7a101F101delTTT---44AY.640.002381
ORF7a101F101delTTT---44AY.7.10.000451
ORF7a101F101delTTT---44AY.75.10.000721
ORF7a101F101VTttGtt44B.10.000037
ORF7a101F101LttTttA44B.1.1.580.021505
ORF7a101F101LTttCtt44B.1.177.760.009975
ORF7a101F101delTTT---44B.1.2580.000266
ORF7a101F101delTTT---44B.1.258.110.001585
ORF7a101F101delTTT---44B.1.258.170.000416
ORF7a101F101delTTT---44B.1.3110.001098
ORF7a101F101delTTT---44N.70.117647
ORF7a101F101delTTT---44P.1.140.000191
ORF7a101F101delTTT---44P.1.70.001277
ORF7a101F101delTTT---44Q.40.001819
ORF7a101F101TTTtACt23All0
ORF7a101F101HTTtCAt23All0
ORF7a101F101HTTTCAC13All0
ORF7a101F101TTTTACA13All0
ORF7a101F101FttTttC33AY.100.00159
ORF7a101F101LttTttG33AY.1000.000138
ORF7a101F101del1ttTtt-33AY.1030.000019
ORF7a101F101delTTT---33AY.1080.003308
ORF7a101F101delTTT---33AY.1160.00086
ORF7a101F101delTTT---33AY.20.001068
ORF7a101F101LttTttG33AY.200.000117
ORF7a101F101FttTttC33AY.250.000018
ORF7a101F101FttTttC33AY.260.000085
ORF7a101F101LttTttG33AY.290.000047
ORF7a101F101del1Ttt-tt23AY.30.00002
ORF7a101F101del1ttTtt-13AY.30.00001
ORF7a101F101delTTT---33AY.370.000948
ORF7a101F101del1tTTtC-23AY.39.1.10.001449
ORF7a101F101del1ttTtt-13AY.39.1.10.000725
ORF7a101F101ITttAtt33AY.430.000013
ORF7a101F101del1ttTtt-33AY.430.000013
ORF7a101F101delTTT---33AY.46.20.001906
ORF7a101F101LttTttA23AY.750.000112
ORF7a101F101LttTttG13AY.750.000056
ORF7a101F101ITttAtt33AY.75.10.000541
ORF7a101F101LTttCtt23AY.980.000158
ORF7a101F101LTtTCtC13AY.980.000079
ORF7a101F101StTttCt33AY.98.10.000145
ORF7a101F101delTTT---33AY.990.003148
ORF7a101F101LTttCtt33B.10.000027
ORF7a101F101del2TTt--t33B.1.10.000054
ORF7a101F101del1ttTtt-23B.1.10.000036
ORF7a101F101del1TTT-NN13B.1.10.000018
ORF7a101F101delTTT---33B.1.1.1700.003741
ORF7a101F101delTTT---33B.1.1.280.000934
ORF7a101F101StTttCt33B.1.1110.003525
ORF7a101F101delTTT---33B.1.130.007126
ORF7a101F101delTTT---33B.1.177.120.000455
ORF7a101F101delTTT---33B.1.177.70.000495
ORF7a101F101delTTT---33B.1.177.860.00055
ORF7a101F101VTttGtt33B.1.2430.000209
ORF7a101F101FttTttC33B.1.3510.000089
ORF7a101F101delTTT---33B.1.351.20.000908
ORF7a101F101delTTT---33B.1.360.000438
ORF7a101F101delTTT---33B.1.36.170.001482
ORF7a101F101delTTT---33B.1.3890.003006
ORF7a101F101del2TTt--t33B.1.4270.000151
ORF7a101F101delTTT---33B.1.5950.000783
ORF7a101F101delTTT---33B.1.5960.000261
ORF7a101F101LttTttG33B.1.5960.000261
ORF7a101F101TTTtACt23B.1.617.20.000008
ORF7a101F101TTTTACA13B.1.617.20.000004
ORF7a101F101delTTT---33B.1.6260.017143
ORF7a101F101delTTT---33B.1.6340.010274
ORF7a101F101delTTT---33B.310.011194
ORF7a101F101LTttCtt13C.370.000116
ORF7a101F101LttTttG13C.370.000116
ORF7a101F101LttTttA13C.370.000116
ORF7a101F101delTTT---33P.1.120.001452
ORF7a101F101LTttCtt33P.1.140.000143
ORF7a101F101LttTttA23Q.10.000253
ORF7a101F101LTttCtt13Q.10.000126
ORF7a101F101delTTT---33Q.30.000435
ORF7a101F101delTTT---220.111111
ORF7a101F101VTttGtt120.055556
ORF7a101F101ITttAtt120.055556
ORF7a101F101ITtTAtA120.055556
ORF7a101F101VTtTGtA120.055556
ORF7a101F101delTTT---22A.2.50.000998
ORF7a101F101delTTT---22A.280.005291
ORF7a101F101NTTtAAt22All0
ORF7a101F101WtTTtGG22All0
ORF7a101F101ATTTGCC12All0
ORF7a101F101ATTtGCt12All0
ORF7a101F101delTTT---22AY.1010.000981
ORF7a101F101VTttGtt22AY.1030.000012
ORF7a101F101CtTttGt22AY.1030.000012
ORF7a101F101delTTT---22AY.1040.003968
ORF7a101F101delTTT---22AY.1090.001479
ORF7a101F101LttTttG22AY.1140.000462
ORF7a101F101LttTttG22AY.1190.000071
ORF7a101F101LttTttG12AY.230.00007
ORF7a101F101LTttCtt12AY.230.00007
ORF7a101F101ITttAtt22AY.250.000012
ORF7a101F101del1ttTtt-22AY.260.000057
ORF7a101F101del1TtT-tG12AY.290.000016
ORF7a101F101del1ttTtt-12AY.290.000016
ORF7a101F101LTttCtt22AY.340.000194
ORF7a101F101LTttCtt22AY.360.000296
ORF7a101F101LTttCtt22AY.39.10.000079
ORF7a101F101del1TTT-NN12AY.4.20.000022
ORF7a101F101del1ttTtt-12AY.4.20.000022
ORF7a101F101del1Ttt-tt22AY.420.00008
ORF7a101F101del1ttTtt-22AY.470.000062
ORF7a101F101delTTT---22AY.480.00093
ORF7a101F101LTttCtt22AY.50.000041
ORF7a101F101delTTT---22AY.5.30.000675
ORF7a101F101delTTT---22AY.5.40.000553
ORF7a101F101delTTT---22AY.590.001059
ORF7a101F101delTTT---22AY.600.001876
ORF7a101F101ITttAtt22AY.740.000231
ORF7a101F101delTTT---22AY.770.002255
ORF7a101F101delTTT---22AY.80.001212
ORF7a101F101delTTT---22AY.840.000875
ORF7a101F101LTttCtt22AY.850.000854
ORF7a101F101delTTT---22AY.870.001665
ORF7a101F101delTTT---22AY.920.000575
ORF7a101F101YtTttAt12AY.980.000079
ORF7a101F101HTTTCAC12AY.980.000079
ORF7a101F101HTTtCAt12AY.980.000079
ORF7a101F101YtTTtAC12AY.980.000079
ORF7a101F101del1ttTtt-22AY.99.20.000184
ORF7a101F101delTTT---22AZ.60.016807
ORF7a101F101StTttCt22B.10.000018
ORF7a101F101LttTttA12B.1.10.000018
ORF7a101F101LTttCtt12B.1.10.000018
ORF7a101F101delTTT---22B.1.1.10.000653
ORF7a101F101del2TTt--t22B.1.1.1530.002191
ORF7a101F101delTTT---22B.1.1.1550.142857
ORF7a101F101FttTttC22B.1.1.2140.000111
ORF7a101F101delTTT---22B.1.1.2320.00363
ORF7a101F101FttTttC22B.1.1.2840.000215
ORF7a101F101delTTT---22B.1.1.330.000842
ORF7a101F101delTTT---22B.1.1.3480.001592
ORF7a101F101delTTT---22B.1.1.4490.045455
ORF7a101F101LTttCtt22B.1.1.5190.000079
ORF7a101F101XtTTtAA22B.1.1.70.000002
ORF7a101F101LttTttG12B.1.1770.000013
ORF7a101F101LTttCtt12B.1.1770.000013
ORF7a101F101delTTT---22B.1.177.150.001262
ORF7a101F101delTTT---22B.1.177.210.000153
ORF7a101F101WtTTtGG22B.1.177.210.000153
ORF7a101F101delTTT---22B.1.177.570.000562
ORF7a101F101VTttGtt22B.1.177.600.000437
ORF7a101F101delTTT---22B.1.177.800.003824
ORF7a101F101FttTttC22B.1.20.000018
ORF7a101F101delTTT---22B.1.2400.000431
ORF7a101F101delTTT---22B.1.3060.011429
ORF7a101F101delTTT---22B.1.3500.005865
ORF7a101F101VTttGtt22B.1.3510.000059
ORF7a101F101del2TTt--t22B.1.36.270.001527
ORF7a101F101delTTT---22B.1.4000.000858
ORF7a101F101del2tTTt--22B.1.4290.000047
ORF7a101F101FttTttC22B.1.4290.000047
ORF7a101F101delTTT---22B.1.5750.000607
ORF7a101F101delTTT---22B.1.5770.001375
ORF7a101F101delTTT---22B.1.6120.005305
ORF7a101F101delTTT---22B.1.621.10.001012
ORF7a101F101del1ttTtt-22B.1.6280.000705
ORF7a101F101VTttGtt22B.1.6370.000146
ORF7a101F101delTTT---22B.4.50.02381
ORF7a101F101delTTT---22B.400.000729
ORF7a101F101delTTT---22C.36.30.001134
ORF7a101F101FttTttC22P.10.000032
ORF7a101F101del1Ttt-tt12P.10.000016
ORF7a101F101del1ttTtt-12P.10.000016
ORF7a101F101del2TTt--t22P.1.10.000635
ORF7a101F101FttTttC22R.10.00018
ORF7a101F101NTTtAAt110.055556
ORF7a101F101XtTTtAA110.055556
ORF7a101F101YtTttAt110.055556
ORF7a101F101KTTTAAA110.055556
ORF7a101F101ETTTGAA110.055556
ORF7a101F101DTTtGAt110.055556
ORF7a101F101delTTT---11A0.000387
ORF7a101F101delTTT---11A.10.000282
ORF7a101F101delTTT---11A.2.20.001689
ORF7a101F101delTTT---11A.210.00277
ORF7a101F101LttTttA11A.230.010526
ORF7a101F101ITttAtt11A.30.002096
ORF7a101F101delTTT---11A.60.005128
ORF7a101F101delTTT---11AH.30.003802
ORF7a101F101RTTTAGA11All0
ORF7a101F101KTTTAAA11All0
ORF7a101F101MTtTAtG11All0
ORF7a101F101DTTtGAt11All0
ORF7a101F101ETTTGAA11All0
ORF7a101F101delTTT---11AW.10.003049
ORF7a101F101delTTT---11AY.10.000396
ORF7a101F101delTTT---11AY.100.00053
ORF7a101F101CtTttGt11AY.1000.000046
ORF7a101F101del1Ttt-tt11AY.1000.000046
ORF7a101F101StTttCt11AY.1000.000046
ORF7a101F101del2TTT--N11AY.1020.000027
ORF7a101F101ITttAtt11AY.1020.000027
ORF7a101F101FttTttC11AY.1030.000006
ORF7a101F101delTTT---11AY.1060.000335
ORF7a101F101delTTT---11AY.1070.000466
ORF7a101F101delTTT---11AY.110.001339
ORF7a101F101StTttCt11AY.1100.000113
ORF7a101F101del1ttTtt-11AY.1110.000183
ORF7a101F101LTttCtt11AY.1180.000063
ORF7a101F101del1Ttt-tt11AY.1180.000063
ORF7a101F101del2TTt--t11AY.1180.000063
ORF7a101F101del1ttTtt-11AY.1190.000035
ORF7a101F101StTttCt11AY.1200.000037
ORF7a101F101VTttGtt11AY.130.000161
ORF7a101F101delTTT---11AY.130.000161
ORF7a101F101FttTttC11AY.140.000088
ORF7a101F101del1ttTtt-11AY.140.000088
ORF7a101F101ITttAtt11AY.190.00114
ORF7a101F101FttTttC11AY.230.00007
ORF7a101F101RTTTAGA11AY.250.000006
ORF7a101F101XtTTtGA11AY.250.000006
ORF7a101F101VTttGtt11AY.260.000028
ORF7a101F101del2TTt--t11AY.260.000028
ORF7a101F101del2tTTt--11AY.290.000016
ORF7a101F101ITttAtt11AY.30.00001
ORF7a101F101StTttCt11AY.30.00001
ORF7a101F101FttTttC11AY.30.00001
ORF7a101F101del1TTT-NN11AY.3.10.000085
ORF7a101F101FttTttC11AY.3.10.000085
ORF7a101F101LttTttG11AY.3.10.000085
ORF7a101F101FttTttC11AY.300.000396
ORF7a101F101StTttCt11AY.320.000532
ORF7a101F101delTTT---11AY.320.000532
ORF7a101F101delTTT---11AY.34.10.00051
ORF7a101F101del1ttTtt-11AY.370.000316
ORF7a101F101FttTttC11AY.390.000025
ORF7a101F101del1ttTtt-11AY.39.10.00004
ORF7a101F101ATTTGCC11AY.40.000002
ORF7a101F101LTttCtt11AY.4.20.000022
ORF7a101F101VTttGtt11AY.430.000004
ORF7a101F101FttTttC11AY.430.000004
ORF7a101F101ATTtGCt11AY.440.000006
ORF7a101F101StTttCt11AY.440.000006
ORF7a101F101del1Ttt-tt11AY.440.000006
ORF7a101F101CtTttGt11AY.440.000006
ORF7a101F101del2tTTt--11AY.450.000122
ORF7a101F101LttTttG11AY.470.000031
ORF7a101F101ITttAtt11AY.50.000021
ORF7a101F101delTTT---11AY.510.000909
ORF7a101F101delTTT---11AY.580.000907
ORF7a101F101delTTT---11AY.610.000105
ORF7a101F101delTTT---11AY.620.000436
ORF7a101F101FttTttC11AY.670.000464
ORF7a101F101delTTT---11AY.690.000187
ORF7a101F101del2TTt--t11AY.7.20.000559
ORF7a101F101delTTT---11AY.720.001361
ORF7a101F101delTTT---11AY.730.000665
ORF7a101F101HTTtCAt11AY.850.000427
ORF7a101F101delTTT---11AY.880.000884
ORF7a101F101VTttGtt11AY.90.000068
ORF7a101F101del1TTT-NN11AY.9.20.000037
ORF7a101F101LttTttA11AY.930.000273
ORF7a101F101FttTttC11AY.980.000079
ORF7a101F101FttTttC11AY.99.20.000092
ORF7a101F101delTTT---11AZ.20.000821
ORF7a101F101YtTttAt11B.10.000009
ORF7a101F101StTttCt11B.1.10.000018
ORF7a101F101FttTttC11B.1.10.000018
ORF7a101F101ITttAtt11B.1.10.000018
ORF7a101F101delTTT---11B.1.1.1210.002427
ORF7a101F101delTTT---11B.1.1.1320.014925
ORF7a101F101delTTT---11B.1.1.1530.001095
ORF7a101F101delTTT---11B.1.1.1680.026316
ORF7a101F101delTTT---11B.1.1.1890.001513
ORF7a101F101LTttCtt11B.1.1.2190.005
ORF7a101F101CtTttGt11B.1.1.2220.000204
ORF7a101F101delTTT---11B.1.1.2580.003257
ORF7a101F101delTTT---11B.1.1.2650.003155
ORF7a101F101delTTT---11B.1.1.2770.000759
ORF7a101F101delTTT---11B.1.1.2800.003086
ORF7a101F101del2TTt--t11B.1.1.2840.000107
ORF7a101F101delTTT---11B.1.1.2980.000862
ORF7a101F101FttTttC11B.1.1.3060.000438
ORF7a101F101delTTT---11B.1.1.3160.000925
ORF7a101F101delTTT---11B.1.1.3170.000412
ORF7a101F101delTTT---11B.1.1.3690.000446
ORF7a101F101delTTT---11B.1.1.3760.005952
ORF7a101F101LttTttG11B.1.1.3890.006061
ORF7a101F101LttTttG11B.1.1.3980.003226
ORF7a101F101delTTT---11B.1.1.3980.003226
ORF7a101F101LTttCtt11B.1.1.4110.014706
ORF7a101F101VTttGtt11B.1.1.4110.014706
ORF7a101F101delTTT---11B.1.1.4110.014706
ORF7a101F101delTTT---11B.1.1.4340.000349
ORF7a101F101LTttCtt11B.1.1.4340.000349
ORF7a101F101delTTT---11B.1.1.4480.002033
ORF7a101F101delTTT---11B.1.1.4860.001577
ORF7a101F101LTttCtt11B.1.1.5070.008696
ORF7a101F101LTttCtt11B.1.1.5150.02
ORF7a101F101FttTttC11B.1.1.5190.00004
ORF7a101F101delTTT---11B.1.1.700.000341
ORF7a101F101delTTT---11B.1.1150.021739
ORF7a101F101delTTT---11B.1.1260.001276
ORF7a101F101delTTT---11B.1.1570.002985
ORF7a101F101FttTttC11B.1.1600.000031
ORF7a101F101del2TTt--t11B.1.1600.000031
ORF7a101F101LttTttA11B.1.1600.000031
ORF7a101F101LTttCtt11B.1.160.110.005714
ORF7a101F101FttTttC11B.1.160.160.000929
ORF7a101F101del2TTt--t11B.1.160.70.002079
ORF7a101F101FttTttC11B.1.160.90.007194
ORF7a101F101FttTttC11B.1.1670.007812
ORF7a101F101StTttCt11B.1.1770.000013
ORF7a101F101ITttAtt11B.1.1770.000013
ORF7a101F101delTTT---11B.1.177.100.000878
ORF7a101F101ITttAtt11B.1.177.120.000152
ORF7a101F101delTTT---11B.1.177.160.000664
ORF7a101F101del2TTt--t11B.1.177.170.000821
ORF7a101F101LTttCtt11B.1.177.320.00135
ORF7a101F101delTTT---11B.1.177.40.000211
ORF7a101F101del1ttTtt-11B.1.177.430.001477
ORF7a101F101delTTT---11B.1.177.500.004695
ORF7a101F101delTTT---11B.1.177.540.000606
ORF7a101F101CtTTtGC11B.1.177.630.002703
ORF7a101F101del1ttTtt-11B.1.177.690.001484
ORF7a101F101LTttCtt11B.1.177.820.000477
ORF7a101F101del1ttTtt-11B.1.20.000009
ORF7a101F101StTttCt11B.1.20.000009
ORF7a101F101VTttGtt11B.1.20.000009
ORF7a101F101LTttCtt11B.1.2080.04
ORF7a101F101delTTT---11B.1.214.20.0006
ORF7a101F101LttTttA11B.1.2210.000071
ORF7a101F101delTTT---11B.1.2320.000537
ORF7a101F101LTttCtt11B.1.2430.00007
ORF7a101F101delTTT---11B.1.2470.014925
ORF7a101F101delTTT---11B.1.258.90.005
ORF7a101F101delTTT---11B.1.2650.001271
ORF7a101F101del1Ttt-tt11B.1.3190.003049
ORF7a101F101LTttCtt11B.1.3190.003049
ORF7a101F101delTTT---11B.1.3200.001245
ORF7a101F101del2TTt--t11B.1.3290.000608
ORF7a101F101delTTT---11B.1.351.30.000876
ORF7a101F101delTTT---11B.1.3560.001727
ORF7a101F101delTTT---11B.1.36.180.00042
ORF7a101F101delTTT---11B.1.36.200.016949
ORF7a101F101delTTT---11B.1.3620.001541
ORF7a101F101LTttCtt11B.1.3690.000285
ORF7a101F101delTTT---11B.1.3710.001122
ORF7a101F101delTTT---11B.1.3750.00082
ORF7a101F101LTttCtt11B.1.3890.001002
ORF7a101F101LttTttG11B.1.3980.002976
ORF7a101F101CtTttGt11B.1.3980.002976
ORF7a101F101delTTT---11B.1.4090.000781
ORF7a101F101StTttCt11B.1.4090.000781
ORF7a101F101delTTT---11B.1.4160.001269
ORF7a101F101StTttCt11B.1.4160.001269
ORF7a101F101delTTT---11B.1.4220.000812
ORF7a101F101CtTttGt11B.1.4270.00005
ORF7a101F101del1ttTtt-11B.1.4290.000024
ORF7a101F101ITttAtt11B.1.4290.000024
ORF7a101F101CtTttGt11B.1.4390.005917
ORF7a101F101delTTT---11B.1.4590.004082
ORF7a101F101CtTttGt11B.1.466.20.000391
ORF7a101F101delTTT---11B.1.466.20.000391
ORF7a101F101delTTT---11B.1.4680.005714
ORF7a101F101delTTT---11B.1.4700.001404
ORF7a101F101LTttCtt11B.1.4700.001404
ORF7a101F101LttTttA11B.1.4970.000315
ORF7a101F101StTttCt11B.1.4970.000315
ORF7a101F101delTTT---11B.1.4990.00105
ORF7a101F101delTTT---11B.1.5030.002488
ORF7a101F101delTTT---11B.1.5170.000427
ORF7a101F101NTTtAAt11B.1.5250.000113
ORF7a101F101YtTttAt11B.1.5260.000024
ORF7a101F101LTttCtt11B.1.5260.000024
ORF7a101F101del2TTT--N11B.1.5260.000024
ORF7a101F101delTTT---11B.1.5270.003704
ORF7a101F101del2TTt--t11B.1.5490.007194
ORF7a101F101ITttAtt11B.1.564.10.001577
ORF7a101F101delTTT---11B.1.5670.003333
ORF7a101F101delTTT---11B.1.5820.000491
ORF7a101F101delTTT---11B.1.5850.027778
ORF7a101F101delTTT---11B.1.5880.00091
ORF7a101F101StTttCt11B.1.5960.000087
ORF7a101F101ITttAtt11B.1.6090.000479
ORF7a101F101delTTT---11B.1.6090.000479
ORF7a101F101ITttAtt11B.1.617.20.000004
ORF7a101F101FttTttC11B.1.617.20.000004
ORF7a101F101del2tTTt--11B.1.617.20.000004
ORF7a101F101StTttCt11B.1.617.20.000004
ORF7a101F101ITttAtt11B.1.619.10.000641
ORF7a101F101delTTT---11B.1.6250.002353
ORF7a101F101ITttAtt11B.1.6370.000073
ORF7a101F101delTTT---11B.1.6380.052632
ORF7a101F101delTTT---11B.1.9.10.032258
ORF7a101F101delTTT---11B.120.00641
ORF7a101F101FttTttC11B.400.000364
ORF7a101F101LTttCtt11B.60.00091
ORF7a101F101LTttCtt11C.350.000774
ORF7a101F101StTttCt11C.350.000774
ORF7a101F101StTttCt11C.36.30.000567
ORF7a101F101YtTttAt11C.370.000116
ORF7a101F101StTttCt11D.20.000075
ORF7a101F101LTttCtt11D.20.000075
ORF7a101F101delTTT---11N.50.001767
ORF7a101F101LTttCtt11P.10.000016
ORF7a101F101FttTttC11P.1.140.000048
ORF7a101F101delTTT---11P.1.160.000374
ORF7a101F101MTtTAtG11P.1.160.000374
ORF7a101F101delTTT---11P.1.170.000162
ORF7a101F101LTttCtt11P.1.40.000977
ORF7a101F101delTTT---11P.1.40.000977
ORF7a101F101StTttCt11P.30.001595
ORF7a101F101del2TTt--t11Q.10.000126
ORF7a101F101delTTT---11Q.20.000613
ORF7a101F101FttTttC11Q.60.006623
ORF7a101F101LttTttA11Q.80.000165
ORF7a101F101del2tTTt--11Q.80.000165
ORF7a101F101CtTttGt11R.10.00009
ORF7a101F101ITttAtt11R.10.00009
ORF7a101F101delTTT---11U.30.003861
ORF7a101F101del1ttTtt-11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.