CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF6 : Mut = Y31del2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF631Y31del2delTAc--c3723020.81182827292-27294
ORF631Y31del2deltACt--372680.18279627292-27294
ORF631Y31del2delTAC--N37210.0026881727292-27294
ORF631Y31del2delTAC--A37210.0026881727292-27294

Details of the mutation Y31del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF631Y31del2TAc--c302372All0.000058
ORF631Y31del2tACt--68372All0.000013
ORF631Y31del2TAC--A1372All0
ORF631Y31del2TAC--N1372All0
ORF631Y31del2TAc--c6277AY.40.000096
ORF631Y31del2tACt--1577AY.40.000023
ORF631Y31del2TAc--c3247B.1.1.70.000029
ORF631Y31del2tACt--1547B.1.1.70.000013
ORF631Y31del2TAc--c2729AY.470.00084
ORF631Y31del2tACt--229AY.470.000062
ORF631Y31del2TAc--c2627AY.1030.000161
ORF631Y31del2tACt--127AY.1030.000006
ORF631Y31del2TAc--c1419AY.440.000085
ORF631Y31del2tACt--519AY.440.00003
ORF631Y31del2TAc--c1618AY.250.000096
ORF631Y31del2tACt--218AY.250.000012
ORF631Y31del2TAc--c1518B.1.617.20.000056
ORF631Y31del2tACt--318B.1.617.20.000011
ORF631Y31del2tACt--915AY.260.000255
ORF631Y31del2TAc--c615AY.260.00017
ORF631Y31del2TAc--c1313AY.900.008898
ORF631Y31del2TAc--c77B.1.20.000062
ORF631Y31del2TAc--c55AY.430.000022
ORF631Y31del2TAc--c55AY.460.00052
ORF631Y31del2TAc--c55B.1.6210.000443
ORF631Y31del2TAc--c34AY.1180.000188
ORF631Y31del2tACt--14AY.1180.000063
ORF631Y31del2TAc--c44AY.46.50.000794
ORF631Y31del2TAc--c44AY.540.000381
ORF631Y31del2TAc--c44R.10.00036
ORF631Y31del2TAc--c33AY.1020.00008
ORF631Y31del2TAc--c33AY.200.000117
ORF631Y31del2TAc--c33AY.30.00003
ORF631Y31del2TAc--c23AY.39.10.000079
ORF631Y31del2tACt--13AY.39.10.00004
ORF631Y31del2TAc--c23B.10.000018
ORF631Y31del2tACt--13B.10.000009
ORF631Y31del2tACt--33B.1.2400.000647
ORF631Y31del2TAc--c12AY.230.00007
ORF631Y31del2tACt--12AY.230.00007
ORF631Y31del2TAc--c22AY.290.000032
ORF631Y31del2TAc--c22AY.3.10.000171
ORF631Y31del2TAc--c22AY.390.000049
ORF631Y31del2TAc--c22AY.4.20.000043
ORF631Y31del2TAc--c22AY.50.000041
ORF631Y31del2TAc--c22AY.60.000082
ORF631Y31del2TAc--c22AY.9.20.000073
ORF631Y31del2TAc--c22B.1.2340.000264
ORF631Y31del2tACt--22B.1.30.005236
ORF631Y31del2TAc--c22B.1.4290.000047
ORF631Y31del2tACt--22B.1.6370.000146
ORF631Y31del2TAc--c22P.10.000032
ORF631Y31del2TAc--c11AY.1130.000142
ORF631Y31del2TAc--c11AY.1200.000037
ORF631Y31del2TAc--c11AY.34.10.00051
ORF631Y31del2TAc--c11AY.360.000148
ORF631Y31del2tACt--11AY.380.000499
ORF631Y31del2TAc--c11AY.4.50.000107
ORF631Y31del2TAc--c11AY.450.000122
ORF631Y31del2tACt--11AY.46.60.000072
ORF631Y31del2TAc--c11AY.590.00053
ORF631Y31del2TAc--c11AY.790.001211
ORF631Y31del2tACt--11AY.99.20.000092
ORF631Y31del2TAc--c11B.1.10.000018
ORF631Y31del2TAc--c11B.1.1.2140.000055
ORF631Y31del2TAc--c11B.1.1.500.000679
ORF631Y31del2TAc--c11B.1.110.30.000718
ORF631Y31del2TAc--c11B.1.177.160.000664
ORF631Y31del2TAC--A11B.1.177.210.000076
ORF631Y31del2TAc--c11B.1.2210.000071
ORF631Y31del2TAc--c11B.1.2580.000067
ORF631Y31del2tACt--11B.1.258.160.001637
ORF631Y31del2TAc--c11B.1.36.10.00114
ORF631Y31del2TAC--N11B.1.3960.000706
ORF631Y31del2TAc--c11B.1.3980.002976
ORF631Y31del2tACt--11B.1.4270.00005
ORF631Y31del2TAc--c11B.1.5260.000024
ORF631Y31del2TAc--c11D.20.000075
ORF631Y31del2TAc--c11P.1.70.000319