CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF6 : Mut = M19del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF619M19deldelATG---179179127256-27258

Details of the mutation M19del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF619M19delATG---179179All0.000034
ORF619M19delATG---4848B.1.177.210.003671
ORF619M19delATG---3535AY.40.000054
ORF619M19delATG---2424B.1.1.70.000021
ORF619M19delATG---660.333333
ORF619M19delATG---66B.1.617.20.000023
ORF619M19delATG---55AY.430.000022
ORF619M19delATG---44AY.840.00175
ORF619M19delATG---44B.10.000037
ORF619M19delATG---44B.1.20.000035
ORF619M19delATG---44B.1.5260.000094
ORF619M19delATG---33AY.1190.000106
ORF619M19delATG---33AY.250.000018
ORF619M19delATG---33P.10.000047
ORF619M19delATG---22AY.1030.000012
ORF619M19delATG---22AY.130.000322
ORF619M19delATG---22AY.420.00008
ORF619M19delATG---22AY.50.000041
ORF619M19delATG---22AY.9.10.000167
ORF619M19delATG---22B.1.10.000036
ORF619M19delATG---22B.1.5250.000226
ORF619M19delATG---11AY.1020.000027
ORF619M19delATG---11AY.1130.000142
ORF619M19delATG---11AY.1180.000063
ORF619M19delATG---11AY.200.000039
ORF619M19delATG---11AY.260.000028
ORF619M19delATG---11AY.370.000316
ORF619M19delATG---11AY.390.000025
ORF619M19delATG---11AY.440.000006
ORF619M19delATG---11AY.450.000122
ORF619M19delATG---11AY.470.000031
ORF619M19delATG---11AY.750.000056
ORF619M19delATG---11AY.990.001049
ORF619M19delATG---11B.1.1.2220.000204
ORF619M19delATG---11B.1.1.5190.00004
ORF619M19delATG---11B.1.617.30.002985
ORF619M19delATG---11B.1.6270.00202

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.