CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 33 | I33T | nonsyn | aTa | aCa | 8709 | 8615 | 0.989207 | 27298-27300 | |
ORF6 | 33 | I33T | nonsyn | aTA | aCG | 8709 | 86 | 0.00987484 | 27298-27300 | |
ORF6 | 33 | I33T | nonsyn | aTA | aCT | 8709 | 8 | 0.00091859 | 27298-27300 |
Details of the mutation I33T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 33 | I33T | aTa | aCa | 8615 | 8709 | All | 0.001648 |
ORF6 | 33 | I33T | aTA | aCG | 86 | 8709 | All | 0.000016 |
ORF6 | 33 | I33T | aTA | aCT | 8 | 8709 | All | 0.000002 |
ORF6 | 33 | I33T | aTa | aCa | 3209 | 3209 | B.1.617.1 | 0.413851 |
ORF6 | 33 | I33T | aTa | aCa | 2350 | 2357 | B.1.1.33 | 0.989057 |
ORF6 | 33 | I33T | aTA | aCT | 7 | 2357 | B.1.1.33 | 0.002946 |
ORF6 | 33 | I33T | aTa | aCa | 558 | 558 | N.5 | 0.985866 |
ORF6 | 33 | I33T | aTa | aCa | 234 | 234 | N.4 | 0.995745 |
ORF6 | 33 | I33T | aTa | aCa | 232 | 233 | B.1 | 0.002125 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 233 | B.1 | 0.000009 |
ORF6 | 33 | I33T | aTa | aCa | 188 | 188 | AY.111 | 0.034432 |
ORF6 | 33 | I33T | aTa | aCa | 172 | 172 | N.3 | 1 |
ORF6 | 33 | I33T | aTa | aCa | 170 | 170 | B.1.1 | 0.003084 |
ORF6 | 33 | I33T | aTa | aCa | 167 | 167 | N.9 | 0.994048 |
ORF6 | 33 | I33T | aTa | aCa | 166 | 166 | AY.4 | 0.000258 |
ORF6 | 33 | I33T | aTa | aCa | 138 | 138 | N.6 | 0.978723 |
ORF6 | 33 | I33T | aTa | aCa | 93 | 95 | B.1.617.2 | 0.00035 |
ORF6 | 33 | I33T | aTA | aCG | 2 | 95 | B.1.617.2 | 0.000008 |
ORF6 | 33 | I33T | aTa | aCa | 82 | 92 | B.1.1.7 | 0.000073 |
ORF6 | 33 | I33T | aTA | aCG | 10 | 92 | B.1.1.7 | 0.000009 |
ORF6 | 33 | I33T | aTa | aCa | 59 | 59 | N.1 | 1 |
ORF6 | 33 | I33T | aTa | aCa | 52 | 52 | AY.102 | 0.001379 |
ORF6 | 33 | I33T | aTa | aCa | 44 | 48 | B.1.2 | 0.000387 |
ORF6 | 33 | I33T | aTA | aCG | 4 | 48 | B.1.2 | 0.000035 |
ORF6 | 33 | I33T | aTa | aCa | 45 | 45 | AY.47 | 0.0014 |
ORF6 | 33 | I33T | aTa | aCa | 40 | 40 | B.1.177.81 | 0.007573 |
ORF6 | 33 | I33T | aTa | aCa | 34 | 34 | AY.93 | 0.009285 |
ORF6 | 33 | I33T | aTa | aCa | 34 | 34 | N.10 | 1 |
ORF6 | 33 | I33T | aTa | aCa | 34 | 34 | N.7 | 1 |
ORF6 | 33 | I33T | aTa | aCa | 32 | 32 | N.8 | 1 |
ORF6 | 33 | I33T | aTa | aCa | 28 | 29 | AY.44 | 0.00017 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 29 | AY.44 | 0.000006 |
ORF6 | 33 | I33T | aTa | aCa | 26 | 26 | N.2 | 1 |
ORF6 | 33 | I33T | aTa | aCa | 17 | 25 | AY.103 | 0.000106 |
ORF6 | 33 | I33T | aTA | aCG | 8 | 25 | AY.103 | 0.00005 |
ORF6 | 33 | I33T | aTa | aCa | 22 | 25 | AY.119 | 0.000777 |
ORF6 | 33 | I33T | aTA | aCG | 3 | 25 | AY.119 | 0.000106 |
ORF6 | 33 | I33T | aTa | aCa | 23 | 23 | AY.27 | 0.001489 |
ORF6 | 33 | I33T | aTa | aCa | 21 | 23 | AY.43 | 0.000093 |
ORF6 | 33 | I33T | aTA | aCG | 2 | 23 | AY.43 | 0.000009 |
ORF6 | 33 | I33T | aTa | aCa | 23 | 23 | AY.54 | 0.002193 |
ORF6 | 33 | I33T | aTa | aCa | 19 | 21 | AY.39 | 0.00047 |
ORF6 | 33 | I33T | aTA | aCG | 2 | 21 | AY.39 | 0.000049 |
ORF6 | 33 | I33T | aTa | aCa | 20 | 20 | AY.4.4 | 0.008183 |
ORF6 | 33 | I33T | aTa | aCa | 20 | 20 | B.1.170 | 0.086207 |
ORF6 | 33 | I33T | aTa | aCa | 15 | 15 | AY.75 | 0.00084 |
ORF6 | 33 | I33T | aTA | aCG | 14 | 14 | AY.6 | 0.000576 |
ORF6 | 33 | I33T | aTa | aCa | 14 | 14 | B.1.1.128 | 0.099291 |
ORF6 | 33 | I33T | aTa | aCa | 9 | 10 | AY.25 | 0.000054 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 10 | AY.25 | 0.000006 |
ORF6 | 33 | I33T | aTa | aCa | 7 | 10 | AY.3 | 0.00007 |
ORF6 | 33 | I33T | aTA | aCG | 3 | 10 | AY.3 | 0.00003 |
ORF6 | 33 | I33T | aTa | aCa | 10 | 10 | B.1.214 | 0.03663 |
ORF6 | 33 | I33T | aTa | aCa | 10 | 10 | C.8 | 0.044643 |
ORF6 | 33 | I33T | aTa | aCa | 7 | 8 | B.1.1.28 | 0.002179 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 8 | B.1.1.28 | 0.000311 |
ORF6 | 33 | I33T | aTa | aCa | 8 | 8 | B.1.1.393 | 0.888889 |
ORF6 | 33 | I33T | aTa | aCa | 7 | 8 | B.1.1.519 | 0.000278 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 8 | B.1.1.519 | 0.00004 |
ORF6 | 33 | I33T | aTa | aCa | 8 | 8 | B.1.234 | 0.001056 |
ORF6 | 33 | I33T | aTa | aCa | 7 | 7 | AY.20 | 0.000272 |
ORF6 | 33 | I33T | aTa | aCa | 7 | 7 | AY.61 | 0.000733 |
ORF6 | 33 | I33T | aTA | aCG | 7 | 7 | B.1.620 | 0.006623 |
ORF6 | 33 | I33T | aTa | aCa | 6 | 6 | AY.3.1 | 0.000512 |
ORF6 | 33 | I33T | aTa | aCa | 6 | 6 | B.1.177 | 0.000079 |
ORF6 | 33 | I33T | aTa | aCa | 5 | 5 | AY.120 | 0.000186 |
ORF6 | 33 | I33T | aTa | aCa | 5 | 5 | AY.46 | 0.00052 |
ORF6 | 33 | I33T | aTa | aCa | 5 | 5 | AY.5 | 0.000103 |
ORF6 | 33 | I33T | aTA | aCG | 4 | 5 | B.1.351 | 0.000119 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 5 | B.1.351 | 0.00003 |
ORF6 | 33 | I33T | aTa | aCa | 4 | 4 | AE.8 | 0.001956 |
ORF6 | 33 | I33T | aTa | aCa | 4 | 4 | AY.116 | 0.001147 |
ORF6 | 33 | I33T | aTa | aCa | 4 | 4 | AY.26 | 0.000113 |
ORF6 | 33 | I33T | aTa | aCa | 4 | 4 | AY.42 | 0.000161 |
ORF6 | 33 | I33T | aTa | aCa | 4 | 4 | AY.68 | 0.001095 |
ORF6 | 33 | I33T | aTa | aCa | 4 | 4 | B | 0.000511 |
ORF6 | 33 | I33T | aTa | aCa | 4 | 4 | B.1.429 | 0.000094 |
ORF6 | 33 | I33T | aTa | aCa | 4 | 4 | B.1.487 | 0.078431 |
ORF6 | 33 | I33T | aTA | aCG | 3 | 4 | P.1 | 0.000047 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 4 | P.1 | 0.000016 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 3 | AY.4.2 | 0.000043 |
ORF6 | 33 | I33T | aTA | aCT | 1 | 3 | AY.4.2 | 0.000022 |
ORF6 | 33 | I33T | aTa | aCa | 3 | 3 | AY.45 | 0.000365 |
ORF6 | 33 | I33T | aTa | aCa | 3 | 3 | AY.46.6 | 0.000217 |
ORF6 | 33 | I33T | aTa | aCa | 3 | 3 | AY.77 | 0.003382 |
ORF6 | 33 | I33T | aTa | aCa | 3 | 3 | B.1.258 | 0.0002 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 3 | B.1.526 | 0.000047 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 3 | B.1.526 | 0.000024 |
ORF6 | 33 | I33T | aTa | aCa | 3 | 3 | P.1.6 | 0.005837 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 3 | P.1.7 | 0.000639 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 3 | P.1.7 | 0.000319 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | AY.100 | 0.000092 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | AY.101 | 0.000981 |
ORF6 | 33 | I33T | aTA | aCG | 2 | 2 | AY.113 | 0.000285 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | AY.23 | 0.000139 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 2 | AY.5.3 | 0.000337 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 2 | AY.5.3 | 0.000337 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 2 | AY.62 | 0.000436 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 2 | AY.62 | 0.000436 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | AY.75.1 | 0.000361 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | B.1.157 | 0.00597 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | B.1.243 | 0.000139 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | B.1.311 | 0.000549 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 2 | B.1.466.2 | 0.000391 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 2 | B.1.466.2 | 0.000391 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | B.1.561 | 0.000794 |
ORF6 | 33 | I33T | aTA | aCG | 2 | 2 | B.1.596 | 0.000174 |
ORF6 | 33 | I33T | aTA | aCG | 2 | 2 | C.16 | 0.002121 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | P.2 | 0.000373 |
ORF6 | 33 | I33T | aTa | aCa | 2 | 2 | R.1 | 0.00018 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | A | 0.000387 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | A.28 | 0.002646 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.108 | 0.001103 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 1 | AY.117 | 0.000085 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 1 | AY.121 | 0.000135 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.16 | 0.00038 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.21 | 0.001898 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.29 | 0.000016 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.33 | 0.000067 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.38 | 0.000499 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.46.5 | 0.000198 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.49 | 0.003195 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.55 | 0.000917 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.65 | 0.000533 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.67 | 0.000464 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 1 | AY.7.1 | 0.000113 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 1 | AY.88 | 0.000884 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.9 | 0.000068 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.9.2 | 0.000037 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.98 | 0.000079 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | AY.98.1 | 0.000048 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.118 | 0.010204 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.192 | 0.002309 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.327 | 0.1 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.332 | 0.03125 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.356 | 0.008547 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.56 | 0.017857 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.104 | 0.00369 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.139 | 0.000733 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 1 | B.1.177.7 | 0.000165 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.201 | 0.005682 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.349 | 0.000715 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 1 | B.1.36 | 0.000146 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.361 | 0.001289 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.399 | 0.001934 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.416.1 | 0.001563 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.459 | 0.004082 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.462 | 0.007246 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.479 | 0.038462 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.575 | 0.000303 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.594 | 0.03125 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.621 | 0.000089 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 1 | B.1.637 | 0.000073 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | B.1.91 | 0.002075 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | C.1.2 | 0.004255 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | C.11 | 0.010638 |
ORF6 | 33 | I33T | aTA | aCG | 1 | 1 | C.37 | 0.000116 |
ORF6 | 33 | I33T | aTa | aCa | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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