CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF6 : Mut = F2S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF62F2SnonsyntTttCt258625840.99922727205-27207
ORF62F2SnonsyntTTtCG258610.00038669827205-27207
ORF62F2SnonsynTTtAGt258610.00038669827205-27207

Details of the mutation F2S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF62F2StTttCt25842586All0.000494
ORF62F2StTTtCG12586All0
ORF62F2STTtAGt12586All0
ORF62F2StTttCt10191019B.1.10.018486
ORF62F2StTttCt746746B.1.1600.023266
ORF62F2StTttCt239240B.10.002189
ORF62F2STTtAGt1240B.10.000009
ORF62F2StTttCt133133P.10.002095
ORF62F2StTttCt124124B.1.1.2940.156962
ORF62F2StTttCt4444B.1.1.70.000039
ORF62F2StTttCt3535M.10.813953
ORF62F2StTttCt3232B.1.1.1410.064386
ORF62F2StTttCt3131B.1.1.5190.001231
ORF62F2StTttCt2525B.1.1.4190.185185
ORF62F2StTttCt2020B.1.3950.140845
ORF62F2StTttCt1111AY.40.000017
ORF62F2StTttCt1111B.1.1.3330.011841
ORF62F2StTttCt99B.1.1.500.00611
ORF62F2StTttCt99B.1.617.20.000034
ORF62F2StTttCt66AY.690.00112
ORF62F2StTttCt66B.1.1770.000079
ORF62F2StTttCt55B.1.360.00073
ORF62F2StTttCt55B.1.3690.001426
ORF62F2StTttCt55B.1.6090.002397
ORF62F2StTttCt44B.1.1.630.001543
ORF62F2StTttCt33AY.30.00003
ORF62F2StTttCt33AY.440.000018
ORF62F2StTttCt33B.1.2580.0002
ORF62F2StTttCt33B.1.5090.002597
ORF62F2StTttCt33B.1.5960.000261
ORF62F2StTttCt22AY.1030.000012
ORF62F2StTttCt12AY.990.001049
ORF62F2StTTtCG12AY.990.001049
ORF62F2StTttCt22B.1.1.1760.000879
ORF62F2StTttCt22B.1.1.3060.000877
ORF62F2StTttCt22B.1.1.3070.005063
ORF62F2StTttCt22B.1.1.3180.000604
ORF62F2StTttCt22B.1.1.3720.001377
ORF62F2StTttCt22B.1.1.4480.004065
ORF62F2StTttCt22B.1.910.004149
ORF62F2StTttCt22C.160.002121
ORF62F2StTttCt11AY.210.001898
ORF62F2StTttCt11AY.250.000006
ORF62F2StTttCt11AY.29.10.000221
ORF62F2StTttCt11AY.300.000396
ORF62F2StTttCt11AY.46.50.000198
ORF62F2StTttCt11AY.470.000031
ORF62F2StTttCt11AY.610.000105
ORF62F2StTttCt11AY.840.000437
ORF62F2StTttCt11B0.000128
ORF62F2StTttCt11B.1.1.2200.001859
ORF62F2StTttCt11B.1.1.250.000569
ORF62F2StTttCt11B.1.1.3110.000358
ORF62F2StTttCt11B.1.1.4160.000905
ORF62F2StTttCt11B.1.1.5250.005464
ORF62F2StTttCt11B.1.1280.000635
ORF62F2StTttCt11B.1.177.160.000664
ORF62F2StTttCt11B.1.177.210.000076
ORF62F2StTttCt11B.1.177.730.000566
ORF62F2StTttCt11B.1.2430.00007
ORF62F2StTttCt11B.1.3490.000715
ORF62F2StTttCt11B.1.3510.00003
ORF62F2StTttCt11B.1.3620.001541
ORF62F2StTttCt11B.1.4000.000429
ORF62F2StTttCt11B.1.4270.00005
ORF62F2StTttCt11B.1.4290.000024
ORF62F2StTttCt11B.1.4700.001404
ORF62F2StTttCt11B.1.5250.000113
ORF62F2StTttCt11B.1.5600.00463
ORF62F2StTttCt11B.1.5890.007576
ORF62F2StTttCt11B.1.5980.016949
ORF62F2StTttCt11B.1.6230.000536

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.