CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF6 : Mut = D61D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF6	61	D61D		syn	gaT	gaC	23928	23928	1	27382-27384

Details of the mutation D61D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF6	61	D61D	gaT	gaC	23928	23928	All	0.004577
ORF6	61	D61D	gaT	gaC	5462	5462	B.1.1.7	0.00489
ORF6	61	D61D	gaT	gaC	1691	1691	AY.4	0.002632
ORF6	61	D61D	gaT	gaC	1525	1525	B.1.2	0.013428
ORF6	61	D61D	gaT	gaC	785	785	AU.1	0.993671
ORF6	61	D61D	gaT	gaC	721	721	AY.25	0.004337
ORF6	61	D61D	gaT	gaC	720	720	B.1.526	0.016923
ORF6	61	D61D	gaT	gaC	518	518	B.1	0.004745
ORF6	61	D61D	gaT	gaC	437	437	B.1.617.2	0.001645
ORF6	61	D61D	gaT	gaC	422	422	B.1.637	0.030837
ORF6	61	D61D	gaT	gaC	404	404	B.1.574	0.868817
ORF6	61	D61D	gaT	gaC	386	386	B.1.1.214	0.021406
ORF6	61	D61D	gaT	gaC	363	363	AY.44	0.002209
ORF6	61	D61D	gaT	gaC	359	359	B.1.177	0.004727
ORF6	61	D61D	gaT	gaC	333	333	P.1	0.005246
ORF6	61	D61D	gaT	gaC	329	329	AY.43	0.001458
ORF6	61	D61D	gaT	gaC	322	322	B.1.617.3	0.961194
ORF6	61	D61D	gaT	gaC	301	301	B.1.1	0.00546
ORF6	61	D61D	gaT	gaC	294	294	AZ.4	0.986577
ORF6	61	D61D	gaT	gaC	283	283	B.1.429	0.006659
ORF6	61	D61D	gaT	gaC	282	282	B.1.177.21	0.021565
ORF6	61	D61D	gaT	gaC	278	278	B.1.177.86	0.051
ORF6	61	D61D	gaT	gaC	267	267	B.1.160	0.008327
ORF6	61	D61D	gaT	gaC	257	257	B.1.177.82	0.122673
ORF6	61	D61D	gaT	gaC	240	240	AY.7	0.04704
ORF6	61	D61D	gaT	gaC	229	229	B.1.1.46	1
ORF6	61	D61D	gaT	gaC	226	226	AY.103	0.001403
ORF6	61	D61D	gaT	gaC	213	213	B.1.177.54	0.129169
ORF6	61	D61D	gaT	gaC	208	208	B.1.438.1	0.02231
ORF6	61	D61D	gaT	gaC	172	172	AY.27	0.011132
ORF6	61	D61D	gaT	gaC	166	166	B.1.214.2	0.09952
ORF6	61	D61D	gaT	gaC	146	146	B.1.1.519	0.005798
ORF6	61	D61D	gaT	gaC	139	139	B.1.258.17	0.014452
ORF6	61	D61D	gaT	gaC	138	138	W.2	0.666667
ORF6	61	D61D	gaT	gaC	133	133	AY.39	0.003287
ORF6	61	D61D	gaT	gaC	121	121	B.1.1.273	0.817568
ORF6	61	D61D	gaT	gaC	112	112	B.1.221	0.007956
ORF6	61	D61D	gaT	gaC	102	102	B.1.351	0.003032
ORF6	61	D61D	gaT	gaC	100	100	B.1.575	0.03034
ORF6	61	D61D	gaT	gaC	97	97	P.1.14	0.004637
ORF6	61	D61D	gaT	gaC	92	92	AY.9.2	0.003379
ORF6	61	D61D	gaT	gaC	86	86	B.1.234	0.011347
ORF6	61	D61D	gaT	gaC	80	80	B.1.243	0.005567
ORF6	61	D61D	gaT	gaC	80	80	D.5	0.39801
ORF6	61	D61D	gaT	gaC	78	78	B.1.525	0.008827
ORF6	61	D61D	gaT	gaC	77	77	B.1.621	0.006816
ORF6	61	D61D	gaT	gaC	75	75	B.1.517	0.032024
ORF6	61	D61D	gaT	gaC	73	73	AY.3	0.000726
ORF6	61	D61D	gaT	gaC	73	73	AY.35	0.017012
ORF6	61	D61D	gaT	gaC	69	69	B.1.36	0.010067
ORF6	61	D61D	gaT	gaC	68	68	B.1.596	0.005925
ORF6	61	D61D	gaT	gaC	66	66	AY.47	0.002053
ORF6	61	D61D	gaT	gaC	61	61	B.1.258	0.004059
ORF6	61	D61D	gaT	gaC	60	60	B.1.427	0.00303
ORF6	61	D61D	gaT	gaC	58	58	B.1.1.432	0.073418
ORF6	61	D61D	gaT	gaC	57	57	B.1.36.29	0.029488
ORF6	61	D61D	gaT	gaC	56	56	A.1	0.015784
ORF6	61	D61D	gaT	gaC	55	55	C.37	0.006383
ORF6	61	D61D	gaT	gaC	54	54	B.1.617.1	0.006964
ORF6	61	D61D	gaT	gaC	52	52	B.4.4	0.981132
ORF6	61	D61D	gaT	gaC	46	46	AY.29	0.000726
ORF6	61	D61D	gaT	gaC	46	46	AY.4.2	0.000998
ORF6	61	D61D	gaT	gaC	46	46	B.1.1.222	0.009384
ORF6	61	D61D	gaT	gaC	46	46	B.1.573	0.280488
ORF6	61	D61D	gaT	gaC	45	45	AY.53	0.012938
ORF6	61	D61D	gaT	gaC	45	45	AY.6	0.001851
ORF6	61	D61D	gaT	gaC	45	45	B.1.619	0.039199
ORF6	61	D61D	gaT	gaC	44	44	AY.20	0.00171
ORF6	61	D61D	gaT	gaC	43	43	AY.46.2	0.027319
ORF6	61	D61D	gaT	gaC	41	41	C.16	0.043478
ORF6	61	D61D	gaT	gaC	39	39	AY.5	0.000805
ORF6	61	D61D	gaT	gaC	39	39	B.1.177.81	0.007384
ORF6	61	D61D	gaT	gaC	39	39	B.1.575.1	0.095122
ORF6	61	D61D	gaT	gaC	37	37	AY.26	0.001047
ORF6	61	D61D	gaT	gaC	36	36	AY.61	0.003772
ORF6	61	D61D	gaT	gaC	35	35	A.2.5	0.017465
ORF6	61	D61D	gaT	gaC	35	35	AY.102	0.000928
ORF6	61	D61D	gaT	gaC	35	35	B.1.177.32	0.047233
ORF6	61	D61D	gaT	gaC	34	34	B.1.36.18	0.014286
ORF6	61	D61D	gaT	gaC	34	34	Q.8	0.005607
ORF6	61	D61D	gaT	gaC	33	33	B.1.466.2	0.012911
ORF6	61	D61D	gaT	gaC	32	32	P.1.15	0.007435
ORF6	61	D61D	gaT	gaC	31	31	AY.98.1	0.001501
ORF6	61	D61D	gaT	gaC	31	31	B.1.1.33	0.013047
ORF6	61	D61D	gaT	gaC	30	30	AY.42	0.001207
ORF6	61	D61D	gaT	gaC	30	30	B.1.1.176	0.013181
ORF6	61	D61D	gaT	gaC	28	28	B.1.1.1	0.009147
ORF6	61	D61D	gaT	gaC	28	28	B.1.177.77	0.020334
ORF6	61	D61D	gaT	gaC	28	28	B.1.36.16	0.039886
ORF6	61	D61D	gaT	gaC	28	28	B.1.450	0.318182
ORF6	61	D61D	gaT	gaC	28	28	R.1	0.00252
ORF6	61	D61D	gaT	gaC	27	27	AY.118	0.001692
ORF6	61	D61D	gaT	gaC	27	27	AY.46.5	0.005357
ORF6	61	D61D	gaT	gaC	27	27	B.1.1.241	0.055901
ORF6	61	D61D	gaT	gaC	27	27	B.1.1.28	0.008403
ORF6	61	D61D	gaT	gaC	25	25	AY.119	0.000883
ORF6	61	D61D	gaT	gaC	25	25	AY.75	0.001401
ORF6	61	D61D	gaT	gaC	25	25	B.1.523	0.061275
ORF6	61	D61D	gaT	gaC	24	24	AY.4.2.1	0.003576
ORF6	61	D61D	gaT	gaC	24	24	P.1.17	0.003882
ORF6	61	D61D	gaT	gaC	23	23	B.1.177.79	0.053864
ORF6	61	D61D	gaT	gaC	22	22	B.1.1.318	0.006639
ORF6	61	D61D	gaT	gaC	22	22	B.1.595	0.005741
ORF6	61	D61D	gaT	gaC	21	21	AY.33	0.001402
ORF6	61	D61D	gaT	gaC	20	20	AY.74	0.002313
ORF6	61	D61D	gaT	gaC	20	20	B.1.311	0.005491
ORF6	61	D61D	gaT	gaC	20	20	C.36	0.018215
ORF6	61	D61D	gaT	gaC	19	19	AY.70	0.003962
ORF6	61	D61D	gaT	gaC	19	19	B.1.560	0.087963
ORF6	61	D61D	gaT	gaC	19	19	B.29	0.066667
ORF6	61	D61D	gaT	gaC	18	18	AY.24	0.007759
ORF6	61	D61D	gaT	gaC	18	18	AY.91	0.013148
ORF6	61	D61D	gaT	gaC	18	18	Q.3	0.002611
ORF6	61	D61D	gaT	gaC	17	17	B	0.002173
ORF6	61	D61D	gaT	gaC	17	17	B.1.1.434	0.005925
ORF6	61	D61D	gaT	gaC	17	17	B.1.241	0.013799
ORF6	61	D61D	gaT	gaC	16	16	AY.100	0.000736
ORF6	61	D61D	gaT	gaC	16	16	AY.14	0.001408
ORF6	61	D61D	gaT	gaC	16	16	AY.4.5	0.00172
ORF6	61	D61D	gaT	gaC	16	16	AY.98	0.001264
ORF6	61	D61D	gaT	gaC	16	16	B.1.177.17	0.013136
ORF6	61	D61D	gaT	gaC	16	16	B.1.36.22	0.019324
ORF6	61	D61D	gaT	gaC	16	16	B.1.599	0.058394
ORF6	61	D61D	gaT	gaC	16	16	B.40	0.005829
ORF6	61	D61D	gaT	gaC	15	15	AY.116	0.004302
ORF6	61	D61D	gaT	gaC	15	15	AY.120	0.000558
ORF6	61	D61D	gaT	gaC	15	15	AY.39.1	0.000594
ORF6	61	D61D	gaT	gaC	15	15	B.1.1.70	0.005116
ORF6	61	D61D	gaT	gaC	15	15	Q.1	0.001895
ORF6	61	D61D	gaT	gaC	14	14	AY.75.1	0.002524
ORF6	61	D61D	gaT	gaC	14	14	B.1.1.291	0.010393
ORF6	61	D61D	gaT	gaC	14	14	B.1.1.317	0.005764
ORF6	61	D61D	gaT	gaC	14	14	P.2	0.002613
ORF6	61	D61D	gaT	gaC	13	13	AY.38	0.00649
ORF6	61	D61D	gaT	gaC	13	13	AY.46	0.001353
ORF6	61	D61D	gaT	gaC	13	13	AY.46.1	0.013347
ORF6	61	D61D	gaT	gaC	13	13	AY.7.2	0.007271
ORF6	61	D61D	gaT	gaC	13	13	B.1.177.7	0.002143
ORF6	61	D61D	gaT	gaC	13	13	B.1.177.83	0.019259
ORF6	61	D61D	gaT	gaC	13	13	B.1.551	0.016774
ORF6	61	D61D	gaT	gaC	13	13	B.1.627	0.026263
ORF6	61	D61D	gaT	gaC	12	12	AY.121	0.001624
ORF6	61	D61D	gaT	gaC	12	12	AY.34	0.001164
ORF6	61	D61D	gaT	gaC	12	12	AY.45	0.00146
ORF6	61	D61D	gaT	gaC	12	12	AY.46.6	0.000866
ORF6	61	D61D	gaT	gaC	12	12	AY.54	0.001144
ORF6	61	D61D	gaT	gaC	12	12	AY.71	0.005701
ORF6	61	D61D	gaT	gaC	12	12	B.1.177.29	0.8
ORF6	61	D61D	gaT	gaC	12	12	B.1.369	0.003423
ORF6	61	D61D	gaT	gaC	12	12	B.1.623	0.006438
ORF6	61	D61D	gaT	gaC	12	12	C.29	0.75
ORF6	61	D61D	gaT	gaC	12	12	P.1.12	0.005808
ORF6	61	D61D	gaT	gaC	11	11	AY.23	0.000767
ORF6	61	D61D	gaT	gaC	11	11	AY.62	0.004793
ORF6	61	D61D	gaT	gaC	11	11	AY.73	0.007319
ORF6	61	D61D	gaT	gaC	11	11	AY.9	0.000744
ORF6	61	D61D	gaT	gaC	11	11	B.1.1.25	0.006254
ORF6	61	D61D	gaT	gaC	11	11	B.1.1.306	0.004822
ORF6	61	D61D	gaT	gaC	11	11	B.1.470	0.015449
ORF6	61	D61D	gaT	gaC	10	10	AE.8	0.00489
ORF6	61	D61D	gaT	gaC	10	10	AY.117	0.000845
ORF6	61	D61D	gaT	gaC	10	10	AY.13	0.00161
ORF6	61	D61D	gaT	gaC	10	10	AY.9.1	0.000837
ORF6	61	D61D	gaT	gaC	10	10	B.1.240	0.002156
ORF6	61	D61D	gaT	gaC	10	10	B.1.258.14	0.009804
ORF6	61	D61D	gaT	gaC	10	10	B.4	0.022075
ORF6	61	D61D	gaT	gaC	10	10	C.1	0.023923
ORF6	61	D61D	gaT	gaC	9	9	AY.113	0.001282
ORF6	61	D61D	gaT	gaC	9	9	AY.3.1	0.000767
ORF6	61	D61D	gaT	gaC	9	9	AY.95	0.006849
ORF6	61	D61D	gaT	gaC	9	9	B.1.1.263	0.014019
ORF6	61	D61D	gaT	gaC	9	9	B.1.1.412	0.068702
ORF6	61	D61D	gaT	gaC	9	9	B.1.1.416	0.008145
ORF6	61	D61D	gaT	gaC	9	9	B.1.218	0.046392
ORF6	61	D61D	gaT	gaC	9	9	B.1.36.9	0.028939
ORF6	61	D61D	gaT	gaC	9	9	B.1.609	0.004314
ORF6	61	D61D	gaT	gaC	8	8	AY.32	0.00426
ORF6	61	D61D	gaT	gaC	8	8	AY.99.2	0.000737
ORF6	61	D61D	gaT	gaC	8	8	B.1.1.435	0.275862
ORF6	61	D61D	gaT	gaC	8	8	B.1.36.8	0.008
ORF6	61	D61D	gaT	gaC	8	8	B.1.396	0.005646
ORF6	61	D61D	gaT	gaC	8	8	D.2	0.0006
ORF6	61	D61D	gaT	gaC	8	8	P.1.1	0.002541
ORF6	61	D61D	gaT	gaC	7	7	A	0.002709
ORF6	61	D61D	gaT	gaC	7	7	AY.12	0.002212
ORF6	61	D61D	gaT	gaC	7	7	AY.63	0.002708
ORF6	61	D61D	gaT	gaC	7	7	AY.92	0.002011
ORF6	61	D61D	gaT	gaC	7	7	B.1.1.216	0.006233
ORF6	61	D61D	gaT	gaC	7	7	B.1.1.464	0.010309
ORF6	61	D61D	gaT	gaC	7	7	B.1.177.12	0.001062
ORF6	61	D61D	gaT	gaC	7	7	B.1.351.2	0.002118
ORF6	61	D61D	gaT	gaC	7	7	B.1.400	0.003003
ORF6	61	D61D	gaT	gaC	7	7	B.1.420	0.072917
ORF6	61	D61D	gaT	gaC	7	7	B.1.588	0.006369
ORF6	61	D61D	gaT	gaC	7	7	P.3	0.011164
ORF6	61	D61D	gaT	gaC	6	6	AY.10	0.00318
ORF6	61	D61D	gaT	gaC	6	6	AY.111	0.001099
ORF6	61	D61D	gaT	gaC	6	6	AY.97	0.010204
ORF6	61	D61D	gaT	gaC	6	6	B.1.1.220	0.011152
ORF6	61	D61D	gaT	gaC	6	6	B.1.1.231	0.018576
ORF6	61	D61D	gaT	gaC	6	6	B.1.1.337	0.021583
ORF6	61	D61D	gaT	gaC	6	6	B.1.1.39	0.003058
ORF6	61	D61D	gaT	gaC	6	6	B.1.1.44	0.014458
ORF6	61	D61D	gaT	gaC	6	6	B.1.1.448	0.012195
ORF6	61	D61D	gaT	gaC	6	6	B.1.111	0.007051
ORF6	61	D61D	gaT	gaC	6	6	B.1.177.57	0.001686
ORF6	61	D61D	gaT	gaC	6	6	B.1.239	0.007326
ORF6	61	D61D	gaT	gaC	6	6	B.1.351.3	0.005259
ORF6	61	D61D	gaT	gaC	6	6	B.1.36.36	0.003612
ORF6	61	D61D	gaT	gaC	6	6	B.1.409	0.004687
ORF6	61	D61D	gaT	gaC	6	6	B.1.621.1	0.003035
ORF6	61	D61D	gaT	gaC	6	6	C.36.3	0.003403
ORF6	61	D61D	gaT	gaC	6	6	N.5	0.010601
ORF6	61	D61D	gaT	gaC	6	6	Q.4	0.002729
ORF6	61	D61D	gaT	gaC	5	5	AD.2	0.001095
ORF6	61	D61D	gaT	gaC	5	5	AY.23.1	0.002087
ORF6	61	D61D	gaT	gaC	5	5	AY.5.4	0.001384
ORF6	61	D61D	gaT	gaC	5	5	AY.59	0.002648
ORF6	61	D61D	gaT	gaC	5	5	AY.69	0.000933
ORF6	61	D61D	gaT	gaC	5	5	AY.84	0.002187
ORF6	61	D61D	gaT	gaC	5	5	B.1.1.316	0.004625
ORF6	61	D61D	gaT	gaC	5	5	B.1.1.63	0.001929
ORF6	61	D61D	gaT	gaC	5	5	B.1.160.28	0.01462
ORF6	61	D61D	gaT	gaC	5	5	B.1.177.10	0.00439
ORF6	61	D61D	gaT	gaC	5	5	B.1.177.63	0.013514
ORF6	61	D61D	gaT	gaC	5	5	B.1.177.75	0.005203
ORF6	61	D61D	gaT	gaC	5	5	B.1.214.3	0.035714
ORF6	61	D61D	gaT	gaC	5	5	B.1.36.37	0.013889
ORF6	61	D61D	gaT	gaC	5	5	B.1.362	0.007704
ORF6	61	D61D	gaT	gaC	5	5	B.1.366	0.02439
ORF6	61	D61D	gaT	gaC	5	5	B.1.568	0.005556
ORF6	61	D61D	gaT	gaC	5	5	B.1.576	0.004533
ORF6	61	D61D	gaT	gaC	5	5	B.1.582	0.002453
ORF6	61	D61D	gaT	gaC	5	5	B.1.619.1	0.003207
ORF6	61	D61D	gaT	gaC	4	4	A.2	0.002647
ORF6	61	D61D	gaT	gaC	4	4	A.23.1	0.002817
ORF6	61	D61D	gaT	gaC	4	4	A.28	0.010582
ORF6	61	D61D	gaT	gaC	4	4	AY.105	0.002572
ORF6	61	D61D	gaT	gaC	4	4	AY.34.1	0.00204
ORF6	61	D61D	gaT	gaC	4	4	AY.39.1.1	0.002899
ORF6	61	D61D	gaT	gaC	4	4	AY.55	0.00367
ORF6	61	D61D	gaT	gaC	4	4	AY.68	0.001095
ORF6	61	D61D	gaT	gaC	4	4	AY.78	0.006163
ORF6	61	D61D	gaT	gaC	4	4	AY.93	0.001092
ORF6	61	D61D	gaT	gaC	4	4	B.1.1.244	0.061538
ORF6	61	D61D	gaT	gaC	4	4	B.1.1.279	0.004484
ORF6	61	D61D	gaT	gaC	4	4	B.1.1.284	0.00043
ORF6	61	D61D	gaT	gaC	4	4	B.1.1.311	0.001433
ORF6	61	D61D	gaT	gaC	4	4	B.1.1.348	0.003185
ORF6	61	D61D	gaT	gaC	4	4	B.1.1.356	0.034188
ORF6	61	D61D	gaT	gaC	4	4	B.1.1.372	0.002755
ORF6	61	D61D	gaT	gaC	4	4	B.1.1.521	0.02139
ORF6	61	D61D	gaT	gaC	4	4	B.1.128	0.002541
ORF6	61	D61D	gaT	gaC	4	4	B.1.157	0.01194
ORF6	61	D61D	gaT	gaC	4	4	B.1.177.73	0.002265
ORF6	61	D61D	gaT	gaC	4	4	B.1.177.87	0.002911
ORF6	61	D61D	gaT	gaC	4	4	B.1.229	0.038835
ORF6	61	D61D	gaT	gaC	4	4	B.1.235	0.010076
ORF6	61	D61D	gaT	gaC	4	4	B.1.36.1	0.004561
ORF6	61	D61D	gaT	gaC	4	4	B.1.36.10	0.019139
ORF6	61	D61D	gaT	gaC	4	4	B.1.416	0.005076
ORF6	61	D61D	gaT	gaC	4	4	B.1.469	0.01444
ORF6	61	D61D	gaT	gaC	4	4	B.6	0.00364
ORF6	61	D61D	gaT	gaC	3	3	A.2.4	0.010101
ORF6	61	D61D	gaT	gaC	3	3	A.21	0.00831
ORF6	61	D61D	gaT	gaC	3	3	AY.16.1	0.00141
ORF6	61	D61D	gaT	gaC	3	3	AY.36	0.000445
ORF6	61	D61D	gaT	gaC	3	3	AY.46.4	0.000494
ORF6	61	D61D	gaT	gaC	3	3	AY.48	0.001395
ORF6	61	D61D	gaT	gaC	3	3	AY.51	0.002727
ORF6	61	D61D	gaT	gaC	3	3	AY.65	0.001599
ORF6	61	D61D	gaT	gaC	3	3	AY.7.1	0.000338
ORF6	61	D61D	gaT	gaC	3	3	AY.86	0.00249
ORF6	61	D61D	gaT	gaC	3	3	AY.99.1	0.004658
ORF6	61	D61D	gaT	gaC	3	3	AZ.2.1	0.02439
ORF6	61	D61D	gaT	gaC	3	3	B.1.1.161	0.010601
ORF6	61	D61D	gaT	gaC	3	3	B.1.1.170	0.003741
ORF6	61	D61D	gaT	gaC	3	3	B.1.1.294	0.003797
ORF6	61	D61D	gaT	gaC	3	3	B.1.1.326	0.005282
ORF6	61	D61D	gaT	gaC	3	3	B.1.1.353	0.0625
ORF6	61	D61D	gaT	gaC	3	3	B.1.1.370	0.037975
ORF6	61	D61D	gaT	gaC	3	3	B.1.1.54	0.009063
ORF6	61	D61D	gaT	gaC	3	3	B.1.139	0.002199
ORF6	61	D61D	gaT	gaC	3	3	B.1.160.16	0.002788
ORF6	61	D61D	gaT	gaC	3	3	B.1.160.26	0.007264
ORF6	61	D61D	gaT	gaC	3	3	B.1.162	0.015075
ORF6	61	D61D	gaT	gaC	3	3	B.1.177.44	0.001557
ORF6	61	D61D	gaT	gaC	3	3	B.1.177.45	0.001144
ORF6	61	D61D	gaT	gaC	3	3	B.1.177.5	0.003727
ORF6	61	D61D	gaT	gaC	3	3	B.1.177.62	0.003576
ORF6	61	D61D	gaT	gaC	3	3	B.1.189	0.012876
ORF6	61	D61D	gaT	gaC	3	3	B.1.236	0.00616
ORF6	61	D61D	gaT	gaC	3	3	B.1.237	0.014925
ORF6	61	D61D	gaT	gaC	3	3	B.1.265	0.003812
ORF6	61	D61D	gaT	gaC	3	3	B.1.36.17	0.001482
ORF6	61	D61D	gaT	gaC	3	3	B.1.36.26	0.008571
ORF6	61	D61D	gaT	gaC	3	3	B.1.36.7	0.012
ORF6	61	D61D	gaT	gaC	3	3	B.1.361	0.003866
ORF6	61	D61D	gaT	gaC	3	3	B.1.398	0.008929
ORF6	61	D61D	gaT	gaC	3	3	B.1.404	0.003906
ORF6	61	D61D	gaT	gaC	3	3	B.1.428.2	0.1
ORF6	61	D61D	gaT	gaC	3	3	B.1.462	0.021739
ORF6	61	D61D	gaT	gaC	3	3	B.1.524	0.004219
ORF6	61	D61D	gaT	gaC	3	3	B.1.620	0.002838
ORF6	61	D61D	gaT	gaC	3	3	C.35	0.002322
ORF6	61	D61D	gaT	gaC	3	3	P.1.2	0.003468
ORF6	61	D61D	gaT	gaC	3	3	P.1.7	0.000958
ORF6	61	D61D	gaT	gaC	3	3	P.5	0.041096
ORF6	61	D61D	gaT	gaC	2	2		0.111111
ORF6	61	D61D	gaT	gaC	2	2	A.3	0.004193
ORF6	61	D61D	gaT	gaC	2	2	AB.1	0.016393
ORF6	61	D61D	gaT	gaC	2	2	AY.106	0.00067
ORF6	61	D61D	gaT	gaC	2	2	AY.16	0.000759
ORF6	61	D61D	gaT	gaC	2	2	AY.2	0.000712
ORF6	61	D61D	gaT	gaC	2	2	AY.37	0.000632
ORF6	61	D61D	gaT	gaC	2	2	AY.39.2	0.003082
ORF6	61	D61D	gaT	gaC	2	2	AY.4.3	0.001684
ORF6	61	D61D	gaT	gaC	2	2	AY.41	0.000588
ORF6	61	D61D	gaT	gaC	2	2	AY.57	0.001312
ORF6	61	D61D	gaT	gaC	2	2	AY.64	0.00119
ORF6	61	D61D	gaT	gaC	2	2	AY.77	0.002255
ORF6	61	D61D	gaT	gaC	2	2	AZ.2	0.001642
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.157	0.001826
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.169	0.036364
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.189	0.003026
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.228	0.006098
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.274	0.010101
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.298	0.001724
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.312	0.003824
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.339	0.021053
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.37	0.000386
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.398	0.006452
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.403	0.051282
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.410	0.074074
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.411	0.029412
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.413	0.013793
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.462	0.017241
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.507	0.017391
ORF6	61	D61D	gaT	gaC	2	2	B.1.1.523	0.003125
ORF6	61	D61D	gaT	gaC	2	2	B.1.126	0.002551
ORF6	61	D61D	gaT	gaC	2	2	B.1.177.35	0.001382
ORF6	61	D61D	gaT	gaC	2	2	B.1.177.38	0.020833
ORF6	61	D61D	gaT	gaC	2	2	B.1.177.42	0.001789
ORF6	61	D61D	gaT	gaC	2	2	B.1.177.65	0.001331
ORF6	61	D61D	gaT	gaC	2	2	B.1.177.74	0.030303
ORF6	61	D61D	gaT	gaC	2	2	B.1.195	0.01005
ORF6	61	D61D	gaT	gaC	2	2	B.1.206	0.001631
ORF6	61	D61D	gaT	gaC	2	2	B.1.232	0.001075
ORF6	61	D61D	gaT	gaC	2	2	B.1.258.3	0.00335
ORF6	61	D61D	gaT	gaC	2	2	B.1.260	0.006689
ORF6	61	D61D	gaT	gaC	2	2	B.1.264	0.024691
ORF6	61	D61D	gaT	gaC	2	2	B.1.279	0.001027
ORF6	61	D61D	gaT	gaC	2	2	B.1.289	0.005319
ORF6	61	D61D	gaT	gaC	2	2	B.1.346	0.002621
ORF6	61	D61D	gaT	gaC	2	2	B.1.375	0.001639
ORF6	61	D61D	gaT	gaC	2	2	B.1.456	0.006536
ORF6	61	D61D	gaT	gaC	2	2	B.1.558	0.009132
ORF6	61	D61D	gaT	gaC	2	2	B.6.6	0.001778
ORF6	61	D61D	gaT	gaC	2	2	C.14	0.008658
ORF6	61	D61D	gaT	gaC	2	2	C.30	0.003454
ORF6	61	D61D	gaT	gaC	2	2	C.37.1	0.005236
ORF6	61	D61D	gaT	gaC	2	2	L.3	0.007092
ORF6	61	D61D	gaT	gaC	2	2	N.3	0.011628
ORF6	61	D61D	gaT	gaC	2	2	N.9	0.011905
ORF6	61	D61D	gaT	gaC	2	2	P.1.10	0.000539
ORF6	61	D61D	gaT	gaC	1	1	A.2.2	0.001689
ORF6	61	D61D	gaT	gaC	1	1	A.2.5.2	0.001572
ORF6	61	D61D	gaT	gaC	1	1	A.2.5.3	0.010309
ORF6	61	D61D	gaT	gaC	1	1	A.29	0.005319
ORF6	61	D61D	gaT	gaC	1	1	AA.5	0.016129
ORF6	61	D61D	gaT	gaC	1	1	AE.1	0.011364
ORF6	61	D61D	gaT	gaC	1	1	AM.4	0.003571
ORF6	61	D61D	gaT	gaC	1	1	AU.2	0.002421
ORF6	61	D61D	gaT	gaC	1	1	AU.3	0.00211
ORF6	61	D61D	gaT	gaC	1	1	AV.1	0.005051
ORF6	61	D61D	gaT	gaC	1	1	AY.1	0.000396
ORF6	61	D61D	gaT	gaC	1	1	AY.11	0.001339
ORF6	61	D61D	gaT	gaC	1	1	AY.120.1	0.000321
ORF6	61	D61D	gaT	gaC	1	1	AY.120.2	0.001285
ORF6	61	D61D	gaT	gaC	1	1	AY.120.2.1	0.000498
ORF6	61	D61D	gaT	gaC	1	1	AY.21	0.001898
ORF6	61	D61D	gaT	gaC	1	1	AY.4.4	0.000409
ORF6	61	D61D	gaT	gaC	1	1	AY.40	0.000964
ORF6	61	D61D	gaT	gaC	1	1	AY.46.3	0.000934
ORF6	61	D61D	gaT	gaC	1	1	AY.49	0.003195
ORF6	61	D61D	gaT	gaC	1	1	AY.5.3	0.000337
ORF6	61	D61D	gaT	gaC	1	1	AY.58	0.000907
ORF6	61	D61D	gaT	gaC	1	1	AY.67	0.000464
ORF6	61	D61D	gaT	gaC	1	1	AY.72	0.001361
ORF6	61	D61D	gaT	gaC	1	1	AY.83	0.001724
ORF6	61	D61D	gaT	gaC	1	1	AY.87	0.000833
ORF6	61	D61D	gaT	gaC	1	1	AY.94	0.000443
ORF6	61	D61D	gaT	gaC	1	1	AY.99	0.001049
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.10	0.001115
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.128	0.007092
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.132	0.014925
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.137	0.0125
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.163	0.007634
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.171	0.003676
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.226	0.005814
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.227	0.004348
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.236	0.006897
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.253	0.002506
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.254	0.011236
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.267	0.010101
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.280	0.003086
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.307	0.002532
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.336	0.016667
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.349	0.010309
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.374	0.002375
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.380	0.009804
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.385	0.004464
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.397	0.002252
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.409	0.002833
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.431	0.016129
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.452	0.111111
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.485	0.016667
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.50	0.000679
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.517	0.006803
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.518	0.006329
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.52	0.012195
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.524	0.020833
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.526	0.003546
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.528	0.004808
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.8	0.003584
ORF6	61	D61D	gaT	gaC	1	1	B.1.1.89	0.006061
ORF6	61	D61D	gaT	gaC	1	1	B.1.110.3	0.000718
ORF6	61	D61D	gaT	gaC	1	1	B.1.13	0.002375
ORF6	61	D61D	gaT	gaC	1	1	B.1.146	0.004237
ORF6	61	D61D	gaT	gaC	1	1	B.1.160.11	0.005714
ORF6	61	D61D	gaT	gaC	1	1	B.1.160.29	0.004219
ORF6	61	D61D	gaT	gaC	1	1	B.1.160.8	0.001289
ORF6	61	D61D	gaT	gaC	1	1	B.1.164	0.014925
ORF6	61	D61D	gaT	gaC	1	1	B.1.170	0.00431
ORF6	61	D61D	gaT	gaC	1	1	B.1.177.11	0.001698
ORF6	61	D61D	gaT	gaC	1	1	B.1.177.15	0.000631
ORF6	61	D61D	gaT	gaC	1	1	B.1.177.20	0.001517
ORF6	61	D61D	gaT	gaC	1	1	B.1.177.50	0.004695
ORF6	61	D61D	gaT	gaC	1	1	B.1.177.53	0.002392
ORF6	61	D61D	gaT	gaC	1	1	B.1.177.6	0.000977
ORF6	61	D61D	gaT	gaC	1	1	B.1.177.76	0.002494
ORF6	61	D61D	gaT	gaC	1	1	B.1.177.9	0.001332
ORF6	61	D61D	gaT	gaC	1	1	B.1.205	0.02381
ORF6	61	D61D	gaT	gaC	1	1	B.1.210	0.002132
ORF6	61	D61D	gaT	gaC	1	1	B.1.212	0.016667
ORF6	61	D61D	gaT	gaC	1	1	B.1.214	0.003663
ORF6	61	D61D	gaT	gaC	1	1	B.1.222	0.001692
ORF6	61	D61D	gaT	gaC	1	1	B.1.247	0.014925
ORF6	61	D61D	gaT	gaC	1	1	B.1.258.16	0.001637
ORF6	61	D61D	gaT	gaC	1	1	B.1.277	0.02381
ORF6	61	D61D	gaT	gaC	1	1	B.1.281	0.021739
ORF6	61	D61D	gaT	gaC	1	1	B.1.287	0.030303
ORF6	61	D61D	gaT	gaC	1	1	B.1.3	0.002618
ORF6	61	D61D	gaT	gaC	1	1	B.1.320	0.001245
ORF6	61	D61D	gaT	gaC	1	1	B.1.324	0.001605
ORF6	61	D61D	gaT	gaC	1	1	B.1.325	0.006897
ORF6	61	D61D	gaT	gaC	1	1	B.1.338	0.008621
ORF6	61	D61D	gaT	gaC	1	1	B.1.343	0.020833
ORF6	61	D61D	gaT	gaC	1	1	B.1.36.35	0.002604
ORF6	61	D61D	gaT	gaC	1	1	B.1.371	0.001122
ORF6	61	D61D	gaT	gaC	1	1	B.1.391	0.001127
ORF6	61	D61D	gaT	gaC	1	1	B.1.416.1	0.001563
ORF6	61	D61D	gaT	gaC	1	1	B.1.422	0.000812
ORF6	61	D61D	gaT	gaC	1	1	B.1.425	0.002994
ORF6	61	D61D	gaT	gaC	1	1	B.1.426	0.001009
ORF6	61	D61D	gaT	gaC	1	1	B.1.428	0.00102
ORF6	61	D61D	gaT	gaC	1	1	B.1.439	0.005917
ORF6	61	D61D	gaT	gaC	1	1	B.1.448	0.002625
ORF6	61	D61D	gaT	gaC	1	1	B.1.474	0.001901
ORF6	61	D61D	gaT	gaC	1	1	B.1.480	0.002488
ORF6	61	D61D	gaT	gaC	1	1	B.1.497	0.000315
ORF6	61	D61D	gaT	gaC	1	1	B.1.507	0.011236
ORF6	61	D61D	gaT	gaC	1	1	B.1.533	0.009615
ORF6	61	D61D	gaT	gaC	1	1	B.1.540	0.009709
ORF6	61	D61D	gaT	gaC	1	1	B.1.546	0.003704
ORF6	61	D61D	gaT	gaC	1	1	B.1.556	0.007519
ORF6	61	D61D	gaT	gaC	1	1	B.1.564	0.000426
ORF6	61	D61D	gaT	gaC	1	1	B.1.564.1	0.001577
ORF6	61	D61D	gaT	gaC	1	1	B.1.565	0.00081
ORF6	61	D61D	gaT	gaC	1	1	B.1.566	0.019231
ORF6	61	D61D	gaT	gaC	1	1	B.1.571	0.009709
ORF6	61	D61D	gaT	gaC	1	1	B.1.577	0.000687
ORF6	61	D61D	gaT	gaC	1	1	B.1.578	0.017857
ORF6	61	D61D	gaT	gaC	1	1	B.1.595.1	0.005848
ORF6	61	D61D	gaT	gaC	1	1	B.1.596.1	0.009346
ORF6	61	D61D	gaT	gaC	1	1	B.1.597	0.00463
ORF6	61	D61D	gaT	gaC	1	1	B.1.6	0.017241
ORF6	61	D61D	gaT	gaC	1	1	B.1.600	0.005848
ORF6	61	D61D	gaT	gaC	1	1	B.1.602	0.006536
ORF6	61	D61D	gaT	gaC	1	1	B.1.605	0.005952
ORF6	61	D61D	gaT	gaC	1	1	B.1.633	0.041667
ORF6	61	D61D	gaT	gaC	1	1	B.1.76	0.011364
ORF6	61	D61D	gaT	gaC	1	1	B.1.9	0.006173
ORF6	61	D61D	gaT	gaC	1	1	B.11	0.005128
ORF6	61	D61D	gaT	gaC	1	1	B.3	0.000831
ORF6	61	D61D	gaT	gaC	1	1	B.3.1	0.001658
ORF6	61	D61D	gaT	gaC	1	1	B.30	0.014706
ORF6	61	D61D	gaT	gaC	1	1	B.31	0.003731
ORF6	61	D61D	gaT	gaC	1	1	B.39	0.002331
ORF6	61	D61D	gaT	gaC	1	1	B.4.7	0.010101
ORF6	61	D61D	gaT	gaC	1	1	B.61	0.005747
ORF6	61	D61D	gaT	gaC	1	1	C.17	0.055556
ORF6	61	D61D	gaT	gaC	1	1	C.30.1	0.006711
ORF6	61	D61D	gaT	gaC	1	1	C.33	0.058824
ORF6	61	D61D	gaT	gaC	1	1	C.39	0.018868
ORF6	61	D61D	gaT	gaC	1	1	P.1.10.1	0.00813
ORF6	61	D61D	gaT	gaC	1	1	P.1.16	0.000374
ORF6	61	D61D	gaT	gaC	1	1	P.1.6	0.001946
ORF6	61	D61D	gaT	gaC	1	1	P.6	0.003145
ORF6	61	D61D	gaT	gaC	1	1	P.7	0.004367
ORF6	61	D61D	gaT	gaC	1	1	W.3	0.005263
ORF6	61	D61D	gaT	gaC	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.