CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF6 : Mut = D30del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF630D30deldelGAT---19061906127289-27291

Details of the mutation D30del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF630D30delGAT---19061906All0.000365
ORF630D30delGAT---300300AY.40.000467
ORF630D30delGAT---269269B.1.1.70.000241
ORF630D30delGAT---8787AY.4.20.001887
ORF630D30delGAT---8484AY.440.000511
ORF630D30delGAT---6363B.1.617.20.000237
ORF630D30delGAT---5555AY.1030.000341
ORF630D30delGAT---5353AY.430.000235
ORF630D30delGAT---5050AY.470.001555
ORF630D30delGAT---4848AY.250.000289
ORF630D30delGAT---4545AY.1200.001673
ORF630D30delGAT---4141B.1.6161
ORF630D30delGAT---3939AY.30.000388
ORF630D30delGAT---3838B.10.000348
ORF630D30delGAT---3333P.10.00052
ORF630D30delGAT---3232N.81
ORF630D30delGAT---2727B.1.20.000238
ORF630D30delGAT---2323AY.1110.004212
ORF630D30delGAT---2121AY.390.000519
ORF630D30delGAT---2121AY.840.009186
ORF630D30delGAT---2020AY.50.000413
ORF630D30delGAT---2020B.1.1080.116279
ORF630D30delGAT---1818AY.130.002898
ORF630D30delGAT---1717AY.1180.001065
ORF630D30delGAT---1616B.1.177.210.001224
ORF630D30delGAT---1414B.1.4290.000329
ORF630D30delGAT---1414B.1.5260.000329
ORF630D30delGAT---1313AY.260.000368
ORF630D30delGAT---1313AY.290.000205
ORF630D30delGAT---1313AY.900.008898
ORF630D30delGAT---1212AY.360.001779
ORF630D30delGAT---1212AY.420.000483
ORF630D30delGAT---1111AY.1190.000388
ORF630D30delGAT---1111AY.850.004699
ORF630D30delGAT---1010AY.460.001041
ORF630D30delGAT---1010B.1.36.360.00602
ORF630D30delGAT---99AY.39.10.000357
ORF630D30delGAT---99AY.450.001095
ORF630D30delGAT---99AY.750.000504
ORF630D30delGAT---88AY.1060.002679
ORF630D30delGAT---88AY.4.2.10.001192
ORF630D30delGAT---88B.1.2400.001725
ORF630D30delGAT---77AY.1020.000186
ORF630D30delGAT---77AY.140.000616
ORF630D30delGAT---77AY.46.50.001389
ORF630D30delGAT---77AY.540.000667
ORF630D30delGAT---77AY.9.20.000257
ORF630D30delGAT---77B.1.1.5190.000278
ORF630D30delGAT---77B.1.6210.00062
ORF630D30delGAT---66AY.270.000388
ORF630D30delGAT---66AY.60.000247
ORF630D30delGAT---66B.1.2580.000399
ORF630D30delGAT---66B.1.3510.000178
ORF630D30delGAT---55AY.1000.00023
ORF630D30delGAT---55AY.3.10.000426
ORF630D30delGAT---55AY.610.000524
ORF630D30delGAT---55AY.98.10.000242
ORF630D30delGAT---55B.1.10.000091
ORF630D30delGAT---55B.1.1.3180.001509
ORF630D30delGAT---55B.1.2340.00066
ORF630D30delGAT---55B.1.3110.001373
ORF630D30delGAT---55B.1.4270.000252
ORF630D30delGAT---55P.1.100.001347
ORF630D30delGAT---44AU.20.009685
ORF630D30delGAT---44AY.200.000155
ORF630D30delGAT---44AY.230.000279
ORF630D30delGAT---44B.1.5250.000453
ORF630D30delGAT---44R.10.00036
ORF630D30delGAT---33AY.120.000948
ORF630D30delGAT---33AY.20.001068
ORF630D30delGAT---33AY.330.0002
ORF630D30delGAT---33AY.710.001425
ORF630D30delGAT---33AY.980.000237
ORF630D30delGAT---33B.1.1.2140.000166
ORF630D30delGAT---33B.1.1.2220.000612
ORF630D30delGAT---33B.1.214.20.001799
ORF630D30delGAT---33C.370.000348
ORF630D30delGAT---22A0.000774
ORF630D30delGAT---22A.10.000564
ORF630D30delGAT---22AY.280.003781
ORF630D30delGAT---22AY.380.000999
ORF630D30delGAT---22AY.4.50.000215
ORF630D30delGAT---22AY.400.001929
ORF630D30delGAT---22AY.46.20.001271
ORF630D30delGAT---22AY.520.001629
ORF630D30delGAT---22AY.530.000575
ORF630D30delGAT---22AY.700.000417
ORF630D30delGAT---22AY.9.10.000167
ORF630D30delGAT---22B0.000256
ORF630D30delGAT---22B.1.1.10.000653
ORF630D30delGAT---22B.1.1.2310.006192
ORF630D30delGAT---22B.1.1.330.000842
ORF630D30delGAT---22B.1.1.4610.024096
ORF630D30delGAT---22B.1.1770.000026
ORF630D30delGAT---22B.1.1950.01005
ORF630D30delGAT---22B.1.2290.019417
ORF630D30delGAT---22B.1.2430.000139
ORF630D30delGAT---22B.1.36.170.000988
ORF630D30delGAT---22B.1.4000.000858
ORF630D30delGAT---22B.1.438.10.000215
ORF630D30delGAT---22B.1.466.20.000782
ORF630D30delGAT---22B.1.5240.002813
ORF630D30delGAT---22B.1.5540.008811
ORF630D30delGAT---22B.1.5750.000607
ORF630D30delGAT---22B.1.617.10.000258
ORF630D30delGAT---22B.1.617.30.00597
ORF630D30delGAT---22D.20.00015
ORF630D30delGAT---22Q.80.00033
ORF630D30delGAT---11AU.10.001266
ORF630D30delGAT---11AY.1010.00049
ORF630D30delGAT---11AY.1100.000113
ORF630D30delGAT---11AY.1160.000287
ORF630D30delGAT---11AY.1170.000085
ORF630D30delGAT---11AY.120.10.000321
ORF630D30delGAT---11AY.120.20.001285
ORF630D30delGAT---11AY.120.2.10.000498
ORF630D30delGAT---11AY.1210.000135
ORF630D30delGAT---11AY.240.000431
ORF630D30delGAT---11AY.29.10.000221
ORF630D30delGAT---11AY.340.000097
ORF630D30delGAT---11AY.34.10.00051
ORF630D30delGAT---11AY.370.000316
ORF630D30delGAT---11AY.4.10.000737
ORF630D30delGAT---11AY.46.30.000934
ORF630D30delGAT---11AY.46.60.000072
ORF630D30delGAT---11AY.5.30.000337
ORF630D30delGAT---11AY.590.00053
ORF630D30delGAT---11AY.630.000387
ORF630D30delGAT---11AY.680.000274
ORF630D30delGAT---11AY.730.000665
ORF630D30delGAT---11AY.75.10.00018
ORF630D30delGAT---11AY.790.001211
ORF630D30delGAT---11AY.90.000068
ORF630D30delGAT---11AY.9.2.10.001976
ORF630D30delGAT---11AY.970.001701
ORF630D30delGAT---11AY.990.001049
ORF630D30delGAT---11B.1.1.2410.00207
ORF630D30delGAT---11B.1.1.250.000569
ORF630D30delGAT---11B.1.1.3160.000925
ORF630D30delGAT---11B.1.1.3690.000446
ORF630D30delGAT---11B.1.1.380.058824
ORF630D30delGAT---11B.1.1.4340.000349
ORF630D30delGAT---11B.1.1.500.000679
ORF630D30delGAT---11B.1.1.510.001718
ORF630D30delGAT---11B.1.1.630.000386
ORF630D30delGAT---11B.1.1.700.000341
ORF630D30delGAT---11B.1.1.80.003584
ORF630D30delGAT---11B.1.110.30.000718
ORF630D30delGAT---11B.1.1310.008772
ORF630D30delGAT---11B.1.177.160.000664
ORF630D30delGAT---11B.1.177.170.000821
ORF630D30delGAT---11B.1.177.90.001332
ORF630D30delGAT---11B.1.2210.000071
ORF630D30delGAT---11B.1.2320.000537
ORF630D30delGAT---11B.1.2390.001221
ORF630D30delGAT---11B.1.2600.003344
ORF630D30delGAT---11B.1.3190.003049
ORF630D30delGAT---11B.1.36.10.00114
ORF630D30delGAT---11B.1.36.240.006173
ORF630D30delGAT---11B.1.3620.001541
ORF630D30delGAT---11B.1.3910.001127
ORF630D30delGAT---11B.1.3960.000706
ORF630D30delGAT---11B.1.3980.002976
ORF630D30delGAT---11B.1.4620.007246
ORF630D30delGAT---11B.1.5760.000907
ORF630D30delGAT---11B.1.5950.000261
ORF630D30delGAT---11B.1.6270.00202
ORF630D30delGAT---11B.1.6370.000073
ORF630D30delGAT---11B.1.9.30.038462
ORF630D30delGAT---11C.2.10.006667
ORF630D30delGAT---11C.36.30.000567
ORF630D30delGAT---11C.36.3.10.002717
ORF630D30delGAT---11N.100.029412
ORF630D30delGAT---11P.1.10.000318
ORF630D30delGAT---11P.1.140.000048
ORF630D30delGAT---11P.1.160.000374
ORF630D30delGAT---11P.1.170.000162
ORF630D30delGAT---11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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