CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF6 : CodonNum = 62

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF6	62	X62del1		del	tAa	t-a	835	754	0.902994	27385-27387
ORF6	62	X62del1		del	taA	ta-	835	70	0.0838323	27385-27387
ORF6	62	X62del1		del	Taa	-aa	835	11	0.0131737	27385-27387
ORF6	62	X62del2		del	tAA	t--	652	407	0.624233	27385-27387
ORF6	62	X62del2		del	TAa	--a	652	244	0.374233	27385-27387
ORF6	62	X62del2		del	TAA	--N	652	1	0.00153374	27385-27387
ORF6	62	X62X		syn	tAa	tGa	492	275	0.558943	27385-27387
ORF6	62	X62X		syn	taA	taG	492	217	0.441057	27385-27387
ORF6	62	X62del		del	TAA	---	443	443	1	27385-27387
ORF6	62	X62Q		nonsyn	Taa	Caa	45	44	0.977778	27385-27387
ORF6	62	X62Q		nonsyn	TaA	CaG	45	1	0.0222222	27385-27387
ORF6	62	X62Y		nonsyn	taA	taT	36	23	0.638889	27385-27387
ORF6	62	X62Y		nonsyn	taA	taC	36	13	0.361111	27385-27387
ORF6	62	X62L		nonsyn	tAa	tTa	24	18	0.75	27385-27387
ORF6	62	X62L		nonsyn	TAA	CTT	24	2	0.0833333	27385-27387
ORF6	62	X62L		nonsyn	TAA	CTC	24	2	0.0833333	27385-27387
ORF6	62	X62L		nonsyn	TAa	CTa	24	2	0.0833333	27385-27387
ORF6	62	X62S		nonsyn	tAa	tCa	17	10	0.588235	27385-27387
ORF6	62	X62S		nonsyn	TAA	AGT	17	2	0.117647	27385-27387
ORF6	62	X62S		nonsyn	TAA	AGC	17	2	0.117647	27385-27387
ORF6	62	X62S		nonsyn	tAA	tCG	17	1	0.0588235	27385-27387
ORF6	62	X62S		nonsyn	tAA	tCC	17	1	0.0588235	27385-27387
ORF6	62	X62S		nonsyn	tAA	tCT	17	1	0.0588235	27385-27387
ORF6	62	X62K		nonsyn	Taa	Aaa	15	15	1	27385-27387
ORF6	62	X62R		nonsyn	TAa	AGa	8	2	0.25	27385-27387
ORF6	62	X62R		nonsyn	TAA	CGT	8	2	0.25	27385-27387
ORF6	62	X62R		nonsyn	TAA	CGC	8	2	0.25	27385-27387
ORF6	62	X62R		nonsyn	TAa	CGa	8	2	0.25	27385-27387
ORF6	62	X62I		nonsyn	TAa	ATa	7	3	0.428571	27385-27387
ORF6	62	X62I		nonsyn	TAA	ATT	7	2	0.285714	27385-27387
ORF6	62	X62I		nonsyn	TAA	ATC	7	2	0.285714	27385-27387
ORF6	62	X62F		nonsyn	tAA	tTC	4	2	0.5	27385-27387
ORF6	62	X62N		nonsyn	TaA	AaT	4	2	0.5	27385-27387
ORF6	62	X62H		nonsyn	TaA	CaC	4	2	0.5	27385-27387
ORF6	62	X62H		nonsyn	TaA	CaT	4	2	0.5	27385-27387
ORF6	62	X62C		nonsyn	tAA	tGC	4	2	0.5	27385-27387
ORF6	62	X62N		nonsyn	TaA	AaC	4	2	0.5	27385-27387
ORF6	62	X62C		nonsyn	tAA	tGT	4	2	0.5	27385-27387
ORF6	62	X62F		nonsyn	tAA	tTT	4	2	0.5	27385-27387
ORF6	62	X62E		nonsyn	TaA	GaG	2	1	0.5	27385-27387
ORF6	62	X62E		nonsyn	Taa	Gaa	2	1	0.5	27385-27387
ORF6	62	X62P		nonsyn	TAa	CCa	1	1	1	27385-27387

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF6	62	X62del1	tAa	t-a	754	835	All	0.000144
ORF6	62	X62del1	taA	ta-	70	835	All	0.000013
ORF6	62	X62del1	Taa	-aa	11	835	All	0.000002
ORF6	62	X62del2	tAA	t--	407	652	All	0.000078
ORF6	62	X62del2	TAa	--a	244	652	All	0.000047
ORF6	62	X62del2	TAA	--N	1	652	All	0
ORF6	62	X62X	tAa	tGa	275	492	All	0.000053
ORF6	62	X62X	taA	taG	217	492	All	0.000042
ORF6	62	X62del1	tAa	t-a	480	480	A.27	0.794702
ORF6	62	X62del	TAA	---	443	443	All	0.000085
ORF6	62	X62del2	tAA	t--	302	349	B.1.1.7	0.00027
ORF6	62	X62del2	TAa	--a	47	349	B.1.1.7	0.000042
ORF6	62	X62X	taA	taG	153	169	B.1.1.7	0.000137
ORF6	62	X62X	tAa	tGa	16	169	B.1.1.7	0.000014
ORF6	62	X62del	TAA	---	147	147	AY.4	0.000229
ORF6	62	X62X	tAa	tGa	89	89	B.1.429	0.002094
ORF6	62	X62del1	tAa	t-a	80	85	AY.4	0.000125
ORF6	62	X62del1	taA	ta-	5	85	AY.4	0.000008
ORF6	62	X62del	TAA	---	83	83	B.1.1.7	0.000074
ORF6	62	X62X	tAa	tGa	69	70	AY.43	0.000306
ORF6	62	X62X	taA	taG	1	70	AY.43	0.000004
ORF6	62	X62del2	TAa	--a	61	64	B.1.1	0.001107
ORF6	62	X62del2	tAA	t--	2	64	B.1.1	0.000036
ORF6	62	X62del2	TAA	--N	1	64	B.1.1	0.000018
ORF6	62	X62Q	Taa	Caa	44	45	All	0.000008
ORF6	62	X62Q	TaA	CaG	1	45	All	0
ORF6	62	X62Y	taA	taT	23	36	All	0.000004
ORF6	62	X62Y	taA	taC	13	36	All	0.000002
ORF6	62	X62del2	TAa	--a	36	36	B.1.1.369	0.016064
ORF6	62	X62X	tAa	tGa	30	32	B.1.617.2	0.000113
ORF6	62	X62X	taA	taG	2	32	B.1.617.2	0.000008
ORF6	62	X62del1	tAa	t-a	18	27	AY.44	0.00011
ORF6	62	X62del1	taA	ta-	9	27	AY.44	0.000055
ORF6	62	X62del2	tAA	t--	20	26	AY.4	0.000031
ORF6	62	X62del2	TAa	--a	6	26	AY.4	0.000009
ORF6	62	X62del1	tAa	t-a	20	25	B.1.1.7	0.000018
ORF6	62	X62del1	taA	ta-	3	25	B.1.1.7	0.000003
ORF6	62	X62del1	Taa	-aa	2	25	B.1.1.7	0.000002
ORF6	62	X62L	tAa	tTa	18	24	All	0.000003
ORF6	62	X62L	TAa	CTa	2	24	All	0
ORF6	62	X62L	TAA	CTC	2	24	All	0
ORF6	62	X62L	TAA	CTT	2	24	All	0
ORF6	62	X62del2	tAA	t--	17	19	B.1.617.2	0.000064
ORF6	62	X62del2	TAa	--a	2	19	B.1.617.2	0.000008
ORF6	62	X62del2	TAa	--a	19	19	C.36.3	0.010777
ORF6	62	X62S	tAa	tCa	10	17	All	0.000002
ORF6	62	X62S	TAA	AGC	2	17	All	0
ORF6	62	X62S	TAA	AGT	2	17	All	0
ORF6	62	X62S	tAA	tCG	1	17	All	0
ORF6	62	X62S	tAA	tCC	1	17	All	0
ORF6	62	X62S	tAA	tCT	1	17	All	0
ORF6	62	X62K	Taa	Aaa	15	15	All	0.000003
ORF6	62	X62del1	tAa	t-a	13	15	B.1.1	0.000236
ORF6	62	X62del1	Taa	-aa	1	15	B.1.1	0.000018
ORF6	62	X62del1	taA	ta-	1	15	B.1.1	0.000018
ORF6	62	X62X	tAa	tGa	12	14	AY.39	0.000297
ORF6	62	X62X	taA	taG	2	14	AY.39	0.000049
ORF6	62	X62del2	TAa	--a	12	14	B.1.2	0.000106
ORF6	62	X62del2	tAA	t--	2	14	B.1.2	0.000018
ORF6	62	X62del	TAA	---	14	14	B.1.617.2	0.000053
ORF6	62	X62del1	taA	ta-	11	14	P.1	0.000173
ORF6	62	X62del1	tAa	t-a	2	14	P.1	0.000032
ORF6	62	X62del1	Taa	-aa	1	14	P.1	0.000016
ORF6	62	X62del	TAA	---	13	13	AY.44	0.000079
ORF6	62	X62del1	tAa	t-a	12	12	B.1.240	0.002587
ORF6	62	X62del	TAA	---	12	12	C.37	0.001393
ORF6	62	X62del	TAA	---	11	11	AY.24	0.004741
ORF6	62	X62del	TAA	---	11	11	AY.43	0.000049
ORF6	62	X62del1	tAa	t-a	9	11	B.1	0.000082
ORF6	62	X62del1	Taa	-aa	1	11	B.1	0.000009
ORF6	62	X62del1	taA	ta-	1	11	B.1	0.000009
ORF6	62	X62del1	tAa	t-a	11	11	B.1.575	0.003337
ORF6	62	X62del1	tAa	t-a	10	11	B.1.617.2	0.000038
ORF6	62	X62del1	taA	ta-	1	11	B.1.617.2	0.000004
ORF6	62	X62del	TAA	---	11	11	Q.3	0.001595
ORF6	62	X62del1	taA	ta-	8	10	AY.3	0.00008
ORF6	62	X62del1	tAa	t-a	2	10	AY.3	0.00002
ORF6	62	X62del1	tAa	t-a	10	10	AY.38	0.004993
ORF6	62	X62Q	Taa	Caa	10	10	AY.85	0.004272
ORF6	62	X62X	taA	taG	10	10	B.1.110	0.045249
ORF6	62	X62X	taA	taG	9	10	B.1.177	0.000119
ORF6	62	X62X	tAa	tGa	1	10	B.1.177	0.000013
ORF6	62	X62del	TAA	---	10	10	B.1.526	0.000235
ORF6	62	X62del1	tAa	t-a	6	9	AY.25	0.000036
ORF6	62	X62del1	taA	ta-	3	9	AY.25	0.000018
ORF6	62	X62del	TAA	---	9	9	AY.3	0.00009
ORF6	62	X62Q	Taa	Caa	9	9	B.1.1.7	0.000008
ORF6	62	X62del1	taA	ta-	9	9	B.1.525	0.001018
ORF6	62	X62L	tAa	tTa	2	8		0.111111
ORF6	62	X62R	TAA	CGT	2	8		0.111111
ORF6	62	X62L	TAa	CTa	2	8		0.111111
ORF6	62	X62L	TAA	CTC	2	8		0.111111
ORF6	62	X62R	TAa	CGa	2	8		0.111111
ORF6	62	X62R	TAa	AGa	2	8		0.111111
ORF6	62	X62L	TAA	CTT	2	8		0.111111
ORF6	62	X62R	TAA	CGC	2	8		0.111111
ORF6	62	X62R	TAa	CGa	2	8	All	0
ORF6	62	X62R	TAa	AGa	2	8	All	0
ORF6	62	X62R	TAA	CGC	2	8	All	0
ORF6	62	X62R	TAA	CGT	2	8	All	0
ORF6	62	X62X	taA	taG	8	8	B.1.1.519	0.000318
ORF6	62	X62del2	TAa	--a	8	8	B.1.177	0.000105
ORF6	62	X62del1	tAa	t-a	7	7	A	0.002709
ORF6	62	X62I	TAa	ATa	3	7	All	0.000001
ORF6	62	X62I	TAA	ATC	2	7	All	0
ORF6	62	X62I	TAA	ATT	2	7	All	0
ORF6	62	X62del1	tAa	t-a	4	7	AY.103	0.000025
ORF6	62	X62del1	Taa	-aa	2	7	AY.103	0.000012
ORF6	62	X62del1	taA	ta-	1	7	AY.103	0.000006
ORF6	62	X62del2	TAa	--a	4	7	AY.25	0.000024
ORF6	62	X62del2	tAA	t--	3	7	AY.25	0.000018
ORF6	62	X62del	TAA	---	7	7	AY.77	0.007892
ORF6	62	X62del2	TAa	--a	6	7	B.1	0.000055
ORF6	62	X62del2	tAA	t--	1	7	B.1	0.000009
ORF6	62	X62I	TAA	ATC	2	6		0.111111
ORF6	62	X62I	TAa	ATa	2	6		0.111111
ORF6	62	X62I	TAA	ATT	2	6		0.111111
ORF6	62	X62X	tAa	tGa	6	6	AY.102	0.000159
ORF6	62	X62del	TAA	---	6	6	AY.103	0.000037
ORF6	62	X62X	tAa	tGa	5	6	AY.103	0.000031
ORF6	62	X62X	taA	taG	1	6	AY.103	0.000006
ORF6	62	X62del	TAA	---	6	6	AY.29	0.000095
ORF6	62	X62del1	tAa	t-a	5	6	AY.39	0.000124
ORF6	62	X62del1	taA	ta-	1	6	AY.39	0.000025
ORF6	62	X62X	tAa	tGa	4	6	AY.4	0.000006
ORF6	62	X62X	taA	taG	2	6	AY.4	0.000003
ORF6	62	X62del2	TAa	--a	4	6	AY.44	0.000024
ORF6	62	X62del2	tAA	t--	2	6	AY.44	0.000012
ORF6	62	X62X	tAa	tGa	6	6	AY.46.6	0.000433
ORF6	62	X62del	TAA	---	6	6	AY.47	0.000187
ORF6	62	X62X	taA	taG	4	6	B.1	0.000037
ORF6	62	X62X	tAa	tGa	2	6	B.1	0.000018
ORF6	62	X62del1	tAa	t-a	6	6	B.1.1.519	0.000238
ORF6	62	X62X	tAa	tGa	5	5	AY.12	0.00158
ORF6	62	X62del	TAA	---	5	5	AY.39	0.000124
ORF6	62	X62Y	taA	taT	4	5	AY.44	0.000024
ORF6	62	X62Y	taA	taC	1	5	AY.44	0.000006
ORF6	62	X62K	Taa	Aaa	5	5	AY.54	0.000477
ORF6	62	X62del	TAA	---	5	5	AY.79	0.006053
ORF6	62	X62del1	tAa	t-a	5	5	B	0.000639
ORF6	62	X62L	tAa	tTa	5	5	B.1.177.21	0.000382
ORF6	62	X62X	taA	taG	4	5	B.1.2	0.000035
ORF6	62	X62X	tAa	tGa	1	5	B.1.2	0.000009
ORF6	62	X62del2	tAA	t--	4	5	B.1.429	0.000094
ORF6	62	X62del2	TAa	--a	1	5	B.1.429	0.000024
ORF6	62	X62del2	tAA	t--	3	5	B.1.637	0.000219
ORF6	62	X62del2	TAa	--a	2	5	B.1.637	0.000146
ORF6	62	X62del	TAA	---	5	5	P.1	0.000079
ORF6	62	X62X	tAa	tGa	5	5	Q.1	0.000632
ORF6	62	X62F	tAA	tTC	2	4		0.111111
ORF6	62	X62N	TaA	AaT	2	4		0.111111
ORF6	62	X62F	tAA	tTT	2	4		0.111111
ORF6	62	X62Y	taA	taC	2	4		0.111111
ORF6	62	X62N	TaA	AaC	2	4		0.111111
ORF6	62	X62Y	taA	taT	2	4		0.111111
ORF6	62	X62H	TaA	CaT	2	4		0.111111
ORF6	62	X62S	TAA	AGC	2	4		0.111111
ORF6	62	X62S	TAA	AGT	2	4		0.111111
ORF6	62	X62C	tAA	tGT	2	4		0.111111
ORF6	62	X62C	tAA	tGC	2	4		0.111111
ORF6	62	X62H	TaA	CaC	2	4		0.111111
ORF6	62	X62H	TaA	CaT	2	4	All	0
ORF6	62	X62N	TaA	AaC	2	4	All	0
ORF6	62	X62F	tAA	tTT	2	4	All	0
ORF6	62	X62C	tAA	tGT	2	4	All	0
ORF6	62	X62N	TaA	AaT	2	4	All	0
ORF6	62	X62F	tAA	tTC	2	4	All	0
ORF6	62	X62H	TaA	CaC	2	4	All	0
ORF6	62	X62C	tAA	tGC	2	4	All	0
ORF6	62	X62del1	tAa	t-a	4	4	AY.102	0.000106
ORF6	62	X62del2	TAa	--a	3	4	AY.103	0.000019
ORF6	62	X62del2	tAA	t--	1	4	AY.103	0.000006
ORF6	62	X62del2	tAA	t--	4	4	AY.3	0.00004
ORF6	62	X62del2	TAa	--a	2	4	AY.39	0.000049
ORF6	62	X62del2	tAA	t--	2	4	AY.39	0.000049
ORF6	62	X62Y	taA	taT	3	4	AY.43	0.000013
ORF6	62	X62Y	taA	taC	1	4	AY.43	0.000004
ORF6	62	X62X	tAa	tGa	3	4	AY.44	0.000018
ORF6	62	X62X	taA	taG	1	4	AY.44	0.000006
ORF6	62	X62del	TAA	---	4	4	AY.46.4	0.000658
ORF6	62	X62del	TAA	---	4	4	B.1.1.214	0.000222
ORF6	62	X62del1	tAa	t-a	3	3	A.29	0.015957
ORF6	62	X62del2	TAa	--a	3	3	AY.10	0.00159
ORF6	62	X62del1	tAa	t-a	2	3	AY.100	0.000092
ORF6	62	X62del1	taA	ta-	1	3	AY.100	0.000046
ORF6	62	X62X	taA	taG	3	3	AY.106	0.001005
ORF6	62	X62del	TAA	---	3	3	AY.118	0.000188
ORF6	62	X62Q	Taa	Caa	3	3	AY.119	0.000106
ORF6	62	X62Y	taA	taC	3	3	AY.14	0.000264
ORF6	62	X62X	tAa	tGa	3	3	AY.14	0.000264
ORF6	62	X62del	TAA	---	3	3	AY.25	0.000018
ORF6	62	X62Y	taA	taT	2	3	AY.3	0.00002
ORF6	62	X62Y	taA	taC	1	3	AY.3	0.00001
ORF6	62	X62del1	tAa	t-a	2	3	AY.34	0.000194
ORF6	62	X62del1	taA	ta-	1	3	AY.34	0.000097
ORF6	62	X62Q	Taa	Caa	3	3	AY.39	0.000074
ORF6	62	X62del1	taA	ta-	3	3	AY.4.5	0.000322
ORF6	62	X62del	TAA	---	3	3	AY.42	0.000121
ORF6	62	X62del	TAA	---	3	3	AY.46.3	0.002801
ORF6	62	X62del	TAA	---	3	3	AY.7	0.000588
ORF6	62	X62del2	tAA	t--	3	3	AY.98	0.000237
ORF6	62	X62Y	taA	taT	2	3	B.1.1.7	0.000002
ORF6	62	X62Y	taA	taC	1	3	B.1.1.7	0.000001
ORF6	62	X62del1	taA	ta-	3	3	B.1.139	0.002199
ORF6	62	X62del2	tAA	t--	3	3	B.1.36.1	0.003421
ORF6	62	X62X	taA	taG	3	3	B.1.497	0.000944
ORF6	62	X62Q	Taa	Caa	3	3	B.1.617.2	0.000011
ORF6	62	X62del2	tAA	t--	3	3	B.1.628	0.001057
ORF6	62	X62X	tAa	tGa	2	2		0.111111
ORF6	62	X62Q	Taa	Caa	2	2		0.111111
ORF6	62	X62K	Taa	Aaa	2	2		0.111111
ORF6	62	X62E	TaA	GaG	1	2	All	0
ORF6	62	X62E	Taa	Gaa	1	2	All	0
ORF6	62	X62del2	TAa	--a	1	2	AY.100	0.000046
ORF6	62	X62del2	tAA	t--	1	2	AY.100	0.000046
ORF6	62	X62del2	TAa	--a	2	2	AY.117	0.000169
ORF6	62	X62del2	tAA	t--	2	2	AY.118	0.000125
ORF6	62	X62del2	tAA	t--	2	2	AY.120	0.000074
ORF6	62	X62del1	tAa	t-a	2	2	AY.26	0.000057
ORF6	62	X62S	tAa	tCa	2	2	AY.3	0.00002
ORF6	62	X62X	taA	taG	2	2	AY.30	0.000791
ORF6	62	X62Y	taA	taC	2	2	AY.33	0.000134
ORF6	62	X62Q	Taa	Caa	2	2	AY.4	0.000003
ORF6	62	X62K	Taa	Aaa	2	2	AY.4	0.000003
ORF6	62	X62Y	taA	taT	2	2	AY.4	0.000003
ORF6	62	X62del2	tAA	t--	2	2	AY.4.2	0.000043
ORF6	62	X62del1	tAa	t-a	1	2	AY.4.2	0.000022
ORF6	62	X62del1	taA	ta-	1	2	AY.4.2	0.000022
ORF6	62	X62del2	tAA	t--	2	2	AY.43	0.000009
ORF6	62	X62del	TAA	---	2	2	AY.7.2	0.001119
ORF6	62	X62X	tAa	tGa	2	2	AY.75	0.000112
ORF6	62	X62del	TAA	---	2	2	AY.75	0.000112
ORF6	62	X62del	TAA	---	2	2	B.1	0.000018
ORF6	62	X62Y	taA	taC	1	2	B.1	0.000009
ORF6	62	X62Q	TaA	CaG	1	2	B.1	0.000009
ORF6	62	X62Y	taA	taT	1	2	B.1	0.000009
ORF6	62	X62Q	Taa	Caa	1	2	B.1	0.000009
ORF6	62	X62del	TAA	---	2	2	B.1.1	0.000036
ORF6	62	X62del2	tAA	t--	2	2	B.1.1.189	0.003026
ORF6	62	X62del2	TAa	--a	2	2	B.1.1.222	0.000408
ORF6	62	X62del1	tAa	t-a	1	2	B.1.1.28	0.000311
ORF6	62	X62del1	taA	ta-	1	2	B.1.1.28	0.000311
ORF6	62	X62del1	tAa	t-a	1	2	B.1.1.33	0.000421
ORF6	62	X62del2	tAA	t--	1	2	B.1.1.33	0.000421
ORF6	62	X62del1	Taa	-aa	1	2	B.1.1.33	0.000421
ORF6	62	X62del2	TAa	--a	1	2	B.1.1.33	0.000421
ORF6	62	X62del1	tAa	t-a	2	2	B.1.1.434	0.000697
ORF6	62	X62del1	tAa	t-a	1	2	B.1.160	0.000031
ORF6	62	X62del1	Taa	-aa	1	2	B.1.160	0.000031
ORF6	62	X62del1	taA	ta-	1	2	B.1.177	0.000013
ORF6	62	X62del1	tAa	t-a	1	2	B.1.177	0.000013
ORF6	62	X62del1	tAa	t-a	2	2	B.1.177.6	0.001953
ORF6	62	X62S	tAa	tCa	1	2	B.1.177.60	0.000218
ORF6	62	X62S	tAA	tCT	1	2	B.1.177.60	0.000218
ORF6	62	X62del	TAA	---	2	2	B.1.2	0.000018
ORF6	62	X62del1	tAa	t-a	2	2	B.1.2	0.000018
ORF6	62	X62K	Taa	Aaa	2	2	B.1.2	0.000018
ORF6	62	X62L	tAa	tTa	2	2	B.1.2	0.000018
ORF6	62	X62del	TAA	---	2	2	B.1.236	0.004107
ORF6	62	X62del1	tAa	t-a	1	2	B.1.243	0.00007
ORF6	62	X62del1	taA	ta-	1	2	B.1.243	0.00007
ORF6	62	X62del	TAA	---	2	2	B.1.258.11	0.000793
ORF6	62	X62del	TAA	---	2	2	B.1.311	0.000549
ORF6	62	X62del	TAA	---	2	2	B.1.351	0.000059
ORF6	62	X62del	TAA	---	2	2	B.1.36	0.000292
ORF6	62	X62X	tAa	tGa	2	2	B.1.36	0.000292
ORF6	62	X62del	TAA	---	2	2	B.1.429	0.000047
ORF6	62	X62del	TAA	---	2	2	B.1.564	0.000852
ORF6	62	X62del2	tAA	t--	2	2	P.1	0.000032
ORF6	62	X62del1	tAa	t-a	2	2	P.1.1	0.000635
ORF6	62	X62del2	TAa	--a	1	2	P.1.14	0.000048
ORF6	62	X62del2	tAA	t--	1	2	P.1.14	0.000048
ORF6	62	X62X	taA	taG	1	1	A	0.000387
ORF6	62	X62del1	tAa	t-a	1	1	A.1	0.000282
ORF6	62	X62del1	tAa	t-a	1	1	A.2	0.000662
ORF6	62	X62S	tAa	tCa	1	1	A.2.4	0.003367
ORF6	62	X62L	tAa	tTa	1	1	A.27	0.001656
ORF6	62	X62del2	TAa	--a	1	1	A.28	0.002646
ORF6	62	X62del	TAA	---	1	1	A.28	0.002646
ORF6	62	X62X	taA	taG	1	1	AA.7	0.009174
ORF6	62	X62P	TAa	CCa	1	1	All	0
ORF6	62	X62L	tAa	tTa	1	1	AY.1	0.000396
ORF6	62	X62del	TAA	---	1	1	AY.100	0.000046
ORF6	62	X62X	taA	taG	1	1	AY.100	0.000046
ORF6	62	X62S	tAa	tCa	1	1	AY.101	0.00049
ORF6	62	X62P	TAa	CCa	1	1	AY.101	0.00049
ORF6	62	X62Q	Taa	Caa	1	1	AY.101	0.00049
ORF6	62	X62Y	taA	taT	1	1	AY.103	0.000006
ORF6	62	X62del	TAA	---	1	1	AY.106	0.000335
ORF6	62	X62del	TAA	---	1	1	AY.108	0.001103
ORF6	62	X62del1	tAa	t-a	1	1	AY.113	0.000142
ORF6	62	X62del	TAA	---	1	1	AY.113	0.000142
ORF6	62	X62del2	TAa	--a	1	1	AY.113	0.000142
ORF6	62	X62Q	Taa	Caa	1	1	AY.116.1	0.000311
ORF6	62	X62del1	tAa	t-a	1	1	AY.116.1	0.000311
ORF6	62	X62del	TAA	---	1	1	AY.117	0.000085
ORF6	62	X62Y	taA	taT	1	1	AY.118	0.000063
ORF6	62	X62X	taA	taG	1	1	AY.119	0.000035
ORF6	62	X62del1	tAa	t-a	1	1	AY.119	0.000035
ORF6	62	X62Y	taA	taT	1	1	AY.119	0.000035
ORF6	62	X62del2	TAa	--a	1	1	AY.119	0.000035
ORF6	62	X62del1	tAa	t-a	1	1	AY.14	0.000088
ORF6	62	X62del	TAA	---	1	1	AY.14	0.000088
ORF6	62	X62del2	TAa	--a	1	1	AY.14	0.000088
ORF6	62	X62X	tAa	tGa	1	1	AY.19	0.00114
ORF6	62	X62del	TAA	---	1	1	AY.2	0.000356
ORF6	62	X62L	tAa	tTa	1	1	AY.20	0.000039
ORF6	62	X62del	TAA	---	1	1	AY.20	0.000039
ORF6	62	X62del2	tAA	t--	1	1	AY.20	0.000039
ORF6	62	X62del2	tAA	t--	1	1	AY.23	0.00007
ORF6	62	X62del2	tAA	t--	1	1	AY.23.1	0.000417
ORF6	62	X62Q	Taa	Caa	1	1	AY.25	0.000006
ORF6	62	X62X	tAa	tGa	1	1	AY.25	0.000006
ORF6	62	X62del	TAA	---	1	1	AY.26	0.000028
ORF6	62	X62del2	TAa	--a	1	1	AY.26	0.000028
ORF6	62	X62Q	Taa	Caa	1	1	AY.26	0.000028
ORF6	62	X62del	TAA	---	1	1	AY.29.1	0.000221
ORF6	62	X62X	taA	taG	1	1	AY.3	0.00001
ORF6	62	X62Q	Taa	Caa	1	1	AY.3	0.00001
ORF6	62	X62del1	tAa	t-a	1	1	AY.32	0.000532
ORF6	62	X62del	TAA	---	1	1	AY.32	0.000532
ORF6	62	X62Q	Taa	Caa	1	1	AY.33	0.000067
ORF6	62	X62Y	taA	taC	1	1	AY.39	0.000025
ORF6	62	X62I	TAa	ATa	1	1	AY.4	0.000002
ORF6	62	X62S	tAa	tCa	1	1	AY.4	0.000002
ORF6	62	X62Y	taA	taT	1	1	AY.4.2	0.000022
ORF6	62	X62Q	Taa	Caa	1	1	AY.43	0.000004
ORF6	62	X62del1	tAa	t-a	1	1	AY.43	0.000004
ORF6	62	X62X	taA	taG	1	1	AY.45	0.000122
ORF6	62	X62del1	tAa	t-a	1	1	AY.45	0.000122
ORF6	62	X62Y	taA	taT	1	1	AY.45	0.000122
ORF6	62	X62del	TAA	---	1	1	AY.46	0.000104
ORF6	62	X62del2	tAA	t--	1	1	AY.46.3	0.000934
ORF6	62	X62del2	tAA	t--	1	1	AY.46.5	0.000198
ORF6	62	X62L	tAa	tTa	1	1	AY.47	0.000031
ORF6	62	X62del1	tAa	t-a	1	1	AY.47	0.000031
ORF6	62	X62X	tAa	tGa	1	1	AY.47	0.000031
ORF6	62	X62S	tAa	tCa	1	1	AY.47	0.000031
ORF6	62	X62del2	tAA	t--	1	1	AY.47	0.000031
ORF6	62	X62del2	TAa	--a	1	1	AY.48	0.000465
ORF6	62	X62S	tAa	tCa	1	1	AY.5	0.000021
ORF6	62	X62del2	TAa	--a	1	1	AY.5.2	0.002463
ORF6	62	X62X	tAa	tGa	1	1	AY.5.4	0.000277
ORF6	62	X62del	TAA	---	1	1	AY.54	0.000095
ORF6	62	X62del2	tAA	t--	1	1	AY.6	0.000041
ORF6	62	X62del	TAA	---	1	1	AY.61	0.000105
ORF6	62	X62X	tAa	tGa	1	1	AY.65	0.000533
ORF6	62	X62del2	tAA	t--	1	1	AY.7.2	0.000559
ORF6	62	X62L	tAa	tTa	1	1	AY.70	0.000209
ORF6	62	X62del	TAA	---	1	1	AY.73	0.000665
ORF6	62	X62del1	taA	ta-	1	1	AY.78	0.001541
ORF6	62	X62del	TAA	---	1	1	AY.84	0.000437
ORF6	62	X62del2	tAA	t--	1	1	AY.84	0.000437
ORF6	62	X62del	TAA	---	1	1	AY.94	0.000443
ORF6	62	X62X	taA	taG	1	1	AY.98.1	0.000048
ORF6	62	X62del2	tAA	t--	1	1	AY.98.1	0.000048
ORF6	62	X62del	TAA	---	1	1	AY.99	0.001049
ORF6	62	X62del2	TAa	--a	1	1	AY.99.2	0.000092
ORF6	62	X62del2	TAa	--a	1	1	AZ.5	0.003509
ORF6	62	X62L	tAa	tTa	1	1	B	0.000128
ORF6	62	X62del2	TAa	--a	1	1	B	0.000128
ORF6	62	X62E	TaA	GaG	1	1	B.1	0.000009
ORF6	62	X62S	tAA	tCG	1	1	B.1.1	0.000018
ORF6	62	X62del1	tAa	t-a	1	1	B.1.1.161	0.003534
ORF6	62	X62X	tAa	tGa	1	1	B.1.1.174	0.003378
ORF6	62	X62del	TAA	---	1	1	B.1.1.207	0.001182
ORF6	62	X62Q	Taa	Caa	1	1	B.1.1.222	0.000204
ORF6	62	X62X	taA	taG	1	1	B.1.1.222	0.000204
ORF6	62	X62X	tAa	tGa	1	1	B.1.1.253	0.002506
ORF6	62	X62del1	tAa	t-a	1	1	B.1.1.261	0.008621
ORF6	62	X62del2	TAa	--a	1	1	B.1.1.28	0.000311
ORF6	62	X62del	TAA	---	1	1	B.1.1.284	0.000107
ORF6	62	X62del1	tAa	t-a	1	1	B.1.1.298	0.000862
ORF6	62	X62del2	tAA	t--	1	1	B.1.1.311	0.000358
ORF6	62	X62Q	Taa	Caa	1	1	B.1.1.33	0.000421
ORF6	62	X62del1	tAa	t-a	1	1	B.1.1.369	0.000446
ORF6	62	X62del2	tAA	t--	1	1	B.1.1.397	0.002252
ORF6	62	X62del2	TAa	--a	1	1	B.1.1.519	0.00004
ORF6	62	X62K	Taa	Aaa	1	1	B.1.1.7	0.000001
ORF6	62	X62L	tAa	tTa	1	1	B.1.1.7	0.000001
ORF6	62	X62S	tAa	tCa	1	1	B.1.1.7	0.000001
ORF6	62	X62del1	tAa	t-a	1	1	B.1.111	0.001175
ORF6	62	X62del	TAA	---	1	1	B.1.158	0.02381
ORF6	62	X62del2	TAa	--a	1	1	B.1.160	0.000031
ORF6	62	X62del1	tAa	t-a	1	1	B.1.160.33	0.004425
ORF6	62	X62del	TAA	---	1	1	B.1.161	0.017241
ORF6	62	X62Q	Taa	Caa	1	1	B.1.177	0.000013
ORF6	62	X62del1	tAa	t-a	1	1	B.1.177.12	0.000152
ORF6	62	X62del	TAA	---	1	1	B.1.177.21	0.000076
ORF6	62	X62del2	tAA	t--	1	1	B.1.177.21	0.000076
ORF6	62	X62S	tAa	tCa	1	1	B.1.177.46	0.000918
ORF6	62	X62del1	tAa	t-a	1	1	B.1.177.7	0.000165
ORF6	62	X62del2	tAA	t--	1	1	B.1.177.8	0.000752
ORF6	62	X62K	Taa	Aaa	1	1	B.1.23	0.006061
ORF6	62	X62del1	Taa	-aa	1	1	B.1.234	0.000132
ORF6	62	X62X	tAa	tGa	1	1	B.1.236	0.002053
ORF6	62	X62X	taA	taG	1	1	B.1.239	0.001221
ORF6	62	X62del2	TAa	--a	1	1	B.1.240	0.000216
ORF6	62	X62del2	TAa	--a	1	1	B.1.241	0.000812
ORF6	62	X62del2	TAa	--a	1	1	B.1.258	0.000067
ORF6	62	X62X	tAa	tGa	1	1	B.1.258.11	0.000396
ORF6	62	X62K	Taa	Aaa	1	1	B.1.258.24	0.010753
ORF6	62	X62del2	tAA	t--	1	1	B.1.311	0.000275
ORF6	62	X62del1	tAa	t-a	1	1	B.1.320	0.001245
ORF6	62	X62del2	tAA	t--	1	1	B.1.340	0.004292
ORF6	62	X62X	tAa	tGa	1	1	B.1.351	0.00003
ORF6	62	X62del1	tAa	t-a	1	1	B.1.351.2	0.000303
ORF6	62	X62del2	tAA	t--	1	1	B.1.36	0.000146
ORF6	62	X62Y	taA	taT	1	1	B.1.36.16	0.001425
ORF6	62	X62X	taA	taG	1	1	B.1.36.29	0.000517
ORF6	62	X62X	tAa	tGa	1	1	B.1.36.8	0.001
ORF6	62	X62del1	taA	ta-	1	1	B.1.369	0.000285
ORF6	62	X62del2	tAA	t--	1	1	B.1.381	0.007812
ORF6	62	X62del2	TAa	--a	1	1	B.1.408	0.00369
ORF6	62	X62del	TAA	---	1	1	B.1.416	0.001269
ORF6	62	X62del1	tAa	t-a	1	1	B.1.416	0.001269
ORF6	62	X62del	TAA	---	1	1	B.1.427	0.00005
ORF6	62	X62del	TAA	---	1	1	B.1.468	0.005714
ORF6	62	X62del	TAA	---	1	1	B.1.470	0.001404
ORF6	62	X62X	taA	taG	1	1	B.1.480	0.002488
ORF6	62	X62del	TAA	---	1	1	B.1.525	0.000113
ORF6	62	X62del1	taA	ta-	1	1	B.1.526	0.000024
ORF6	62	X62X	tAa	tGa	1	1	B.1.564	0.000426
ORF6	62	X62del1	tAa	t-a	1	1	B.1.564	0.000426
ORF6	62	X62del2	tAA	t--	1	1	B.1.577	0.000687
ORF6	62	X62L	tAa	tTa	1	1	B.1.588	0.00091
ORF6	62	X62del1	tAa	t-a	1	1	B.1.595	0.000261
ORF6	62	X62del2	TAa	--a	1	1	B.1.595	0.000261
ORF6	62	X62del1	tAa	t-a	1	1	B.1.596	0.000087
ORF6	62	X62Y	taA	taT	1	1	B.1.617.2	0.000004
ORF6	62	X62L	tAa	tTa	1	1	B.1.617.2	0.000004
ORF6	62	X62S	tAA	tCC	1	1	B.1.617.2	0.000004
ORF6	62	X62E	Taa	Gaa	1	1	B.1.617.2	0.000004
ORF6	62	X62del	TAA	---	1	1	B.1.617.3	0.002985
ORF6	62	X62del2	TAa	--a	1	1	B.1.621.1	0.000506
ORF6	62	X62del2	TAa	--a	1	1	B.1.623	0.000536
ORF6	62	X62del2	TAa	--a	1	1	B.1.625	0.002353
ORF6	62	X62del	TAA	---	1	1	B.1.627	0.00202
ORF6	62	X62del1	taA	ta-	1	1	B.1.629	0.013333
ORF6	62	X62del	TAA	---	1	1	B.1.637	0.000073
ORF6	62	X62del1	Taa	-aa	1	1	B.1.637	0.000073
ORF6	62	X62del1	tAa	t-a	1	1	B.40	0.000364
ORF6	62	X62del1	taA	ta-	1	1	C.37	0.000116
ORF6	62	X62Q	Taa	Caa	1	1	D.2	0.000075
ORF6	62	X62del	TAA	---	1	1	D.2	0.000075
ORF6	62	X62K	Taa	Aaa	1	1	D.2	0.000075
ORF6	62	X62X	taA	taG	1	1	P.1	0.000016
ORF6	62	X62del1	tAa	t-a	1	1	P.1.17	0.000162
ORF6	62	X62del1	tAa	t-a	1	1	P.2	0.000187
ORF6	62	X62del	TAA	---	1	1	P.7	0.004367
ORF6	62	X62del	TAA	---	1	1	Q.8	0.000165
ORF6	62	X62del2	tAA	t--	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.