CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF6 : CodonNum = 56

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF656Q56RnonsyncAacGa207720750.99903727367-27369
ORF656Q56RnonsynCAaAGa207710.00048146427367-27369
ORF656Q56RnonsyncAAcGG207710.00048146427367-27369
ORF656Q56XnonsynCaaTaa285285127367-27369
ORF656Q56deldelCAA---223223127367-27369
ORF656Q56LnonsyncAacTa1631620.99386527367-27369
ORF656Q56LnonsynCAaTTa16310.0061349727367-27369
ORF656Q56QsyncaAcaG129129127367-27369
ORF656Q56HnonsyncaAcaC20130.6527367-27369
ORF656Q56HnonsyncaAcaT2070.3527367-27369
ORF656Q56KnonsynCaaAaa1919127367-27369
ORF656Q56EnonsynCaaGaa1515127367-27369
ORF656Q56PnonsyncAacCa14120.85714327367-27369
ORF656Q56PnonsyncAAcCT1420.14285727367-27369
ORF656Q56del1delcaAca-970.77777827367-27369
ORF656Q56del1delcAac-a910.11111127367-27369
ORF656Q56del1delCaa-aa910.11111127367-27369
ORF656Q56NnonsynCaAAaC33127367-27369
ORF656Q56YnonsynCaATaC22127367-27369
ORF656Q56del2delCAa--a210.527367-27369
ORF656Q56del2delcAAc--210.527367-27369
ORF656Q56InonsynCAaATa11127367-27369
ORF656Q56DnonsynCaAGaT11127367-27369
ORF656Q56TnonsynCAaACa11127367-27369
ORF656Q56VnonsynCAaGTa11127367-27369

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF656Q56RcAacGa20752077All0.000397
ORF656Q56RCAaAGa12077All0
ORF656Q56RcAAcGG12077All0
ORF656Q56RcAacGa17971797AY.670.834262
ORF656Q56XCaaTaa285285All0.000055
ORF656Q56delCAA---223223All0.000043
ORF656Q56LcAacTa162163All0.000031
ORF656Q56LCAaTTa1163All0
ORF656Q56XCaaTaa130130B.1.1.70.000116
ORF656Q56QcaAcaG129129All0.000025
ORF656Q56delCAA---115115AY.40.000179
ORF656Q56RcAacGa9595B.1.617.20.000358
ORF656Q56RcAacGa6363AY.39.10.002496
ORF656Q56QcaAcaG6363B.1.1.70.000056
ORF656Q56XCaaTaa5959B.1.1.5190.002343
ORF656Q56LcAacTa5151AY.40.000079
ORF656Q56HcaAcaC1320All0.000002
ORF656Q56HcaAcaT720All0.000001
ORF656Q56KCaaAaa1919All0.000004
ORF656Q56QcaAcaG1717AY.98.10.000823
ORF656Q56XCaaTaa1616B.1.20.000141
ORF656Q56ECaaGaa1515All0.000003
ORF656Q56LcAacTa1515AY.98.10.000726
ORF656Q56delCAA---1515B.1.1.70.000013
ORF656Q56PcAacCa1214All0.000002
ORF656Q56PcAAcCT214All0
ORF656Q56RcAacGa1414B.1.1.70.000013
ORF656Q56LcAacTa1313B.1.20.000114
ORF656Q56QcaAcaG1313B.1.617.20.000049
ORF656Q56RcAacGa1212AY.620.005229
ORF656Q56XCaaTaa1111B.10.000101
ORF656Q56LcAacTa1111B.1.1.70.00001
ORF656Q56LcAacTa1010AY.470.000311
ORF656Q56delCAA---1010B.1.617.20.000038
ORF656Q56delCAA---1010C.370.001161
ORF656Q56del1caAca-79All0.000001
ORF656Q56del1cAac-a19All0
ORF656Q56del1Caa-aa19All0
ORF656Q56RcAacGa99AY.1030.000056
ORF656Q56LcAacTa99B.1.4290.000212
ORF656Q56QcaAcaG88A.2.50.003992
ORF656Q56delCAA---88AY.430.000035
ORF656Q56LcAacTa77AY.1030.000043
ORF656Q56XCaaTaa77AY.40.000011
ORF656Q56RcAacGa67AY.440.000037
ORF656Q56RcAAcGG17AY.440.000006
ORF656Q56RcAacGa77AY.690.001307
ORF656Q56delCAA---77AY.770.007892
ORF656Q56LcAacTa77B.1.1770.000092
ORF656Q56QcaAcaG77B.1.20.000062
ORF656Q56XCaaTaa66B.1.10.000109
ORF656Q56delCAA---55AY.390.000124
ORF656Q56RcAacGa55AY.470.000156
ORF656Q56XCaaTaa55C.370.00058
ORF656Q56XCaaTaa44AY.1030.000025
ORF656Q56delCAA---44AY.30.00004
ORF656Q56RcAacGa44AY.40.000006
ORF656Q56LcAacTa44AY.440.000024
ORF656Q56LcAacTa44AY.610.000419
ORF656Q56KCaaAaa44B.1.1.3350.051948
ORF656Q56del1caAca-44B.1.1.70.000004
ORF656Q56ECaaGaa44B.1.177.210.000306
ORF656Q56ECaaGaa44P.10.000063
ORF656Q56NCaAAaC33All0.000001
ORF656Q56RcAacGa33AY.200.000117
ORF656Q56RcAacGa33AY.250.000018
ORF656Q56XCaaTaa33AY.430.000013
ORF656Q56RcAacGa33AY.430.000013
ORF656Q56LcAacTa33AY.430.000013
ORF656Q56PcAacCa33AY.440.000018
ORF656Q56delCAA---33AY.70.000588
ORF656Q56RcAacGa33AY.75.10.000541
ORF656Q56RcAacGa33B0.000383
ORF656Q56RcAacGa33B.10.000027
ORF656Q56LcAacTa33B.10.000027
ORF656Q56RcAacGa33B.1.20.000026
ORF656Q56LcAacTa33B.1.617.20.000011
ORF656Q56QcaAcaG33D.20.000225
ORF656Q56delCAA---33P.10.000047
ORF656Q56HcaAcaC220.111111
ORF656Q56NCaAAaC220.111111
ORF656Q56XCaaTaa220.111111
ORF656Q56YCaATaC220.111111
ORF656Q56YCaATaC22All0
ORF656Q56del2cAAc--12All0
ORF656Q56del2CAa--a12All0
ORF656Q56RcAacGa22AY.1000.000092
ORF656Q56delCAA---22AY.1030.000012
ORF656Q56PcAAcCT12AY.1130.000142
ORF656Q56PcAacCa12AY.1130.000142
ORF656Q56delCAA---22AY.1180.000125
ORF656Q56RcAacGa22AY.240.000862
ORF656Q56RcAacGa22AY.260.000057
ORF656Q56PcAacCa22AY.290.000032
ORF656Q56XCaaTaa22AY.30.00002
ORF656Q56PcAacCa22AY.300.000791
ORF656Q56RcAacGa22AY.390.000049
ORF656Q56del1caAca-12AY.40.000002
ORF656Q56HcaAcaC12AY.40.000002
ORF656Q56del1Caa-aa12AY.40.000002
ORF656Q56HcaAcaT12AY.40.000002
ORF656Q56delCAA---22AY.420.00008
ORF656Q56ECaaGaa22AY.440.000012
ORF656Q56HcaAcaC22AY.440.000012
ORF656Q56delCAA---22AY.440.000012
ORF656Q56LcAacTa22AY.46.60.000144
ORF656Q56delCAA---22AY.470.000062
ORF656Q56XCaaTaa22AY.50.000041
ORF656Q56RcAacGa22AY.520.001629
ORF656Q56KCaaAaa22AY.570.001312
ORF656Q56RcAacGa22AY.610.00021
ORF656Q56HcaAcaC22AY.7.20.001119
ORF656Q56RcAacGa22AY.750.000112
ORF656Q56RcAacGa22AY.9.20.000073
ORF656Q56delCAA---22B.10.000018
ORF656Q56KCaaAaa22B.10.000018
ORF656Q56HcaAcaT22B.1.10.000036
ORF656Q56LcAacTa12B.1.10.000018
ORF656Q56LCAaTTa12B.1.10.000018
ORF656Q56XCaaTaa22B.1.1.2140.000111
ORF656Q56XCaaTaa22B.1.1.370.000386
ORF656Q56QcaAcaG22B.1.1.4200.002012
ORF656Q56HcaAcaT22B.1.1.70.000002
ORF656Q56KCaaAaa22B.1.1.70.000002
ORF656Q56XCaaTaa22B.1.1600.000062
ORF656Q56LcAacTa22B.1.4270.000101
ORF656Q56RcAacGa22B.1.5250.000226
ORF656Q56delCAA---22B.1.5250.000226
ORF656Q56delCAA---22B.1.5260.000047
ORF656Q56LcAacTa22B.1.6090.000959
ORF656Q56XCaaTaa22P.30.00319
ORF656Q56XCaaTaa11A0.000387
ORF656Q56delCAA---11A.280.002646
ORF656Q56XCaaTaa11A.50.001923
ORF656Q56RcAacGa11AE.80.000489
ORF656Q56DCaAGaT11All0
ORF656Q56ICAaATa11All0
ORF656Q56TCAaACa11All0
ORF656Q56VCAaGTa11All0
ORF656Q56RcAacGa11AY.100.00053
ORF656Q56delCAA---11AY.1000.000046
ORF656Q56RcAacGa11AY.1020.000027
ORF656Q56PcAacCa11AY.1020.000027
ORF656Q56del1caAca-11AY.1030.000006
ORF656Q56QcaAcaG11AY.1030.000006
ORF656Q56KCaaAaa11AY.1030.000006
ORF656Q56delCAA---11AY.1060.000335
ORF656Q56XCaaTaa11AY.1070.000466
ORF656Q56LcAacTa11AY.1090.00074
ORF656Q56RcAacGa11AY.1100.000113
ORF656Q56HcaAcaT11AY.1130.000142
ORF656Q56delCAA---11AY.1130.000142
ORF656Q56delCAA---11AY.1170.000085
ORF656Q56QcaAcaG11AY.1170.000085
ORF656Q56RcAacGa11AY.1170.000085
ORF656Q56XCaaTaa11AY.1170.000085
ORF656Q56RcAacGa11AY.120.000316
ORF656Q56delCAA---11AY.140.000088
ORF656Q56LcAacTa11AY.140.000088
ORF656Q56RcAacGa11AY.16.10.00047
ORF656Q56delCAA---11AY.200.000039
ORF656Q56delCAA---11AY.230.00007
ORF656Q56LcAacTa11AY.230.00007
ORF656Q56QcaAcaG11AY.230.00007
ORF656Q56RcAacGa11AY.230.00007
ORF656Q56QcaAcaG11AY.250.000006
ORF656Q56XCaaTaa11AY.250.000006
ORF656Q56delCAA---11AY.250.000006
ORF656Q56HcaAcaC11AY.250.000006
ORF656Q56delCAA---11AY.260.000028
ORF656Q56delCAA---11AY.270.000065
ORF656Q56QcaAcaG11AY.270.000065
ORF656Q56HcaAcaC11AY.290.000016
ORF656Q56delCAA---11AY.290.000016
ORF656Q56HcaAcaT11AY.29.10.000221
ORF656Q56LcAacTa11AY.29.10.000221
ORF656Q56QcaAcaG11AY.30.00001
ORF656Q56RcAacGa11AY.330.000067
ORF656Q56KCaaAaa11AY.330.000067
ORF656Q56XCaaTaa11AY.340.000097
ORF656Q56LcAacTa11AY.390.000025
ORF656Q56LcAacTa11AY.39.10.00004
ORF656Q56QcaAcaG11AY.40.000002
ORF656Q56KCaaAaa11AY.40.000002
ORF656Q56RcAacGa11AY.400.000964
ORF656Q56HcaAcaC11AY.430.000004
ORF656Q56del2CAa--a11AY.440.000006
ORF656Q56RcAacGa11AY.450.000122
ORF656Q56XCaaTaa11AY.46.40.000165
ORF656Q56RcAacGa11AY.50.000021
ORF656Q56KCaaAaa11AY.50.000021
ORF656Q56ECaaGaa11AY.60.000041
ORF656Q56XCaaTaa11AY.60.000041
ORF656Q56QcaAcaG11AY.610.000105
ORF656Q56XCaaTaa11AY.610.000105
ORF656Q56XCaaTaa11AY.630.000387
ORF656Q56RcAacGa11AY.650.000533
ORF656Q56LcAacTa11AY.670.000464
ORF656Q56TCAaACa11AY.70.000196
ORF656Q56RcAacGa11AY.700.000209
ORF656Q56RCAaAGa11AY.710.000475
ORF656Q56delCAA---11AY.730.000665
ORF656Q56QcaAcaG11AY.75.10.00018
ORF656Q56delCAA---11AY.840.000437
ORF656Q56XCaaTaa11AY.9.20.000037
ORF656Q56VCAaGTa11AY.9.20.000037
ORF656Q56LcAacTa11AY.9.20.000037
ORF656Q56RcAacGa11AY.920.000287
ORF656Q56RcAacGa11AY.930.000273
ORF656Q56delCAA---11AY.940.000443
ORF656Q56RcAacGa11AY.98.10.000048
ORF656Q56delCAA---11AY.990.001049
ORF656Q56QcaAcaG11B0.000128
ORF656Q56ECaaGaa11B.1.10.000018
ORF656Q56ICAaATa11B.1.10.000018
ORF656Q56KCaaAaa11B.1.10.000018
ORF656Q56DCaAGaT11B.1.10.000018
ORF656Q56delCAA---11B.1.1.1630.007634
ORF656Q56XCaaTaa11B.1.1.2070.001182
ORF656Q56QcaAcaG11B.1.1.280.000311
ORF656Q56HcaAcaC11B.1.1.3980.003226
ORF656Q56PcAAcCT11B.1.1.70.000001
ORF656Q56ECaaGaa11B.1.1.70.000001
ORF656Q56del2cAAc--11B.1.1.70.000001
ORF656Q56delCAA---11B.1.1470.000756
ORF656Q56LcAacTa11B.1.1600.000031
ORF656Q56HcaAcaC11B.1.1600.000031
ORF656Q56XCaaTaa11B.1.160.300.002976
ORF656Q56delCAA---11B.1.1610.017241
ORF656Q56XCaaTaa11B.1.1770.000013
ORF656Q56PcAacCa11B.1.1770.000013
ORF656Q56RcAacGa11B.1.177.100.000878
ORF656Q56NCaAAaC11B.1.177.210.000076
ORF656Q56KCaaAaa11B.1.177.210.000076
ORF656Q56QcaAcaG11B.1.177.870.000728
ORF656Q56delCAA---11B.1.20.000009
ORF656Q56XCaaTaa11B.1.220.001318
ORF656Q56XCaaTaa11B.1.2210.000071
ORF656Q56XCaaTaa11B.1.2400.000216
ORF656Q56LcAacTa11B.1.2430.00007
ORF656Q56delCAA---11B.1.3110.000275
ORF656Q56del1caAca-11B.1.3110.000275
ORF656Q56XCaaTaa11B.1.3200.001245
ORF656Q56RcAacGa11B.1.3510.00003
ORF656Q56XCaaTaa11B.1.360.000146
ORF656Q56LcAacTa11B.1.36.350.002604
ORF656Q56XCaaTaa11B.1.36.360.000602
ORF656Q56PcAacCa11B.1.36.80.001
ORF656Q56KCaaAaa11B.1.3980.002976
ORF656Q56delCAA---11B.1.4040.001302
ORF656Q56XCaaTaa11B.1.416.10.001563
ORF656Q56XCaaTaa11B.1.4270.00005
ORF656Q56KCaaAaa11B.1.4290.000024
ORF656Q56XCaaTaa11B.1.4290.000024
ORF656Q56QcaAcaG11B.1.4290.000024
ORF656Q56RcAacGa11B.1.4320.011236
ORF656Q56XCaaTaa11B.1.466.20.000391
ORF656Q56XCaaTaa11B.1.4970.000315
ORF656Q56KCaaAaa11B.1.5150.014493
ORF656Q56XCaaTaa11B.1.5230.002451
ORF656Q56QcaAcaG11B.1.5250.000113
ORF656Q56QcaAcaG11B.1.5260.000024
ORF656Q56delCAA---11B.1.5640.000426
ORF656Q56RcAacGa11B.1.5750.000303
ORF656Q56XCaaTaa11B.1.5760.000907
ORF656Q56XCaaTaa11B.1.5770.000687
ORF656Q56QcaAcaG11B.1.5960.000087
ORF656Q56RcAacGa11B.1.596.10.009346
ORF656Q56RcAacGa11B.1.617.10.000129
ORF656Q56ECaaGaa11B.1.617.20.000004
ORF656Q56XCaaTaa11B.1.617.20.000004
ORF656Q56HcaAcaC11B.1.617.20.000004
ORF656Q56PcAacCa11B.1.617.20.000004
ORF656Q56delCAA---11B.1.617.30.002985
ORF656Q56delCAA---11B.1.6270.00202
ORF656Q56LcAacTa11B.1.6290.013333
ORF656Q56XCaaTaa11B.60.00091
ORF656Q56LcAacTa11C.180.002591
ORF656Q56del1cAac-a11D.20.000075
ORF656Q56LcAacTa11N.40.004255
ORF656Q56RcAacGa11P.10.000016
ORF656Q56LcAacTa11P.1.10.000318
ORF656Q56ECaaGaa11P.1.120.000484
ORF656Q56delCAA---11Q.30.000145
ORF656Q56delCAA---11Q.80.000165