CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF6 : CodonNum = 48

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF648K48NnonsynaaAaaT35944358940.99860927343-27345
ORF648K48NnonsynaaAaaC35944500.0013910527343-27345
ORF648K48KsynaaAaaG238238127343-27345
ORF648K48EnonsynAaaGaa2272260.99559527343-27345
ORF648K48EnonsynAaAGaG22710.0044052927343-27345
ORF648K48deldelAAA---198198127343-27345
ORF648K48TnonsynaAaaCa4646127343-27345
ORF648K48InonsynaAaaTa45280.62222227343-27345
ORF648K48InonsynaAAaTT45150.33333327343-27345
ORF648K48InonsynaAAaTC4520.044444427343-27345
ORF648K48RnonsynaAaaGa2929127343-27345
ORF648K48XnonsynAaaTaa1414127343-27345
ORF648K48del1delAaa-aa1070.727343-27345
ORF648K48del1delaaAaa-1030.327343-27345
ORF648K48GnonsynAAaGGa99127343-27345
ORF648K48QnonsynAaaCaa66127343-27345
ORF648K48SnonsynAAaTCa420.527343-27345
ORF648K48SnonsynaAAaGC420.527343-27345
ORF648K48del2delAAa--a320.66666727343-27345
ORF648K48del2delaAAa--310.33333327343-27345
ORF648K48AnonsynAAAGCG22127343-27345

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF648K48NaaAaaT3589435944All0.006865
ORF648K48NaaAaaC5035944All0.00001
ORF648K48NaaAaaT3493334933AY.260.988959
ORF648K48NaaAaaT448449AY.1130.06379
ORF648K48NaaAaaC1449AY.1130.000142
ORF648K48KaaAaaG238238All0.000046
ORF648K48EAaaGaa226227All0.000043
ORF648K48EAaAGaG1227All0
ORF648K48delAAA---198198All0.000038
ORF648K48delAAA---114114AY.40.000177
ORF648K48NaaAaaT9799B.1.617.20.000365
ORF648K48NaaAaaC299B.1.617.20.000008
ORF648K48KaaAaaG8383AY.39.10.003288
ORF648K48EAaaGaa7777B.1.1.70.000069
ORF648K48EAaaGaa7676B.1.3510.002259
ORF648K48NaaAaaT6167AY.1030.000379
ORF648K48NaaAaaC667AY.1030.000037
ORF648K48NaaAaaT5353AY.440.000323
ORF648K48NaaAaaT4747AY.750.002633
ORF648K48TaAaaCa4646All0.000009
ORF648K48IaAaaTa2845All0.000005
ORF648K48IaAAaTT1545All0.000003
ORF648K48IaAAaTC245All0
ORF648K48NaaAaaT3232AY.120.20.041131
ORF648K48RaAaaGa2929All0.000006
ORF648K48KaaAaaG2929AY.40.000045
ORF648K48KaaAaaG2626AY.430.000115
ORF648K48NaaAaaT2124B.10.000192
ORF648K48NaaAaaC324B.10.000027
ORF648K48TaAaaCa2020AY.99.20.001843
ORF648K48NaaAaaC1620B.1.1.70.000014
ORF648K48NaaAaaT420B.1.1.70.000004
ORF648K48TaAaaCa1919P.20.003546
ORF648K48NaaAaaT1717AY.430.000075
ORF648K48KaaAaaG1616AY.1130.002278
ORF648K48KaaAaaG1616B.1.1.70.000014
ORF648K48XAaaTaa1414All0.000003
ORF648K48NaaAaaT1213AY.470.000373
ORF648K48NaaAaaC113AY.470.000031
ORF648K48KaaAaaG1313B.1.617.20.000049
ORF648K48NaaAaaT1011AY.250.00006
ORF648K48NaaAaaC111AY.250.000006
ORF648K48NaaAaaT1111B0.001406
ORF648K48RaAaaGa1111B.1.1.70.00001
ORF648K48del1Aaa-aa710All0.000001
ORF648K48del1aaAaa-310All0.000001
ORF648K48EAaaGaa1010AY.440.000061
ORF648K48delAAA---1010B.1.1.70.000009
ORF648K48NaaAaaT710B.1.1770.000092
ORF648K48NaaAaaC310B.1.1770.00004
ORF648K48GAAaGGa99All0.000002
ORF648K48NaaAaaT99AY.520.007329
ORF648K48NaaAaaT99AY.620.003922
ORF648K48EAaaGaa99B.1.5090.007792
ORF648K48GAAaGGa88AY.30.00008
ORF648K48delAAA---88AY.770.009019
ORF648K48KaaAaaG88B.1.1.3480.006369
ORF648K48delAAA---88B.1.617.20.00003
ORF648K48EAaaGaa78B.1.617.20.000026
ORF648K48EAaAGaG18B.1.617.20.000004
ORF648K48NaaAaaT77AY.46.60.000505
ORF648K48QAaaCaa66All0.000001
ORF648K48NaaAaaT66AY.40.000009
ORF648K48EAaaGaa66AY.40.000009
ORF648K48NaaAaaT66AY.540.000572
ORF648K48NaaAaaT66AY.610.000629
ORF648K48NaaAaaT66AY.920.001724
ORF648K48NaaAaaT66AY.930.001638
ORF648K48IaAaaTa46B.1.1.70.000004
ORF648K48IaAAaTC16B.1.1.70.000001
ORF648K48IaAAaTT16B.1.1.70.000001
ORF648K48IaAaaTa56B.1.617.20.000019
ORF648K48IaAAaTT16B.1.617.20.000004
ORF648K48EAaaGaa66B.1.6370.000438
ORF648K48KaaAaaG55AY.1020.000133
ORF648K48IaAaaTa55AY.1030.000031
ORF648K48NaaAaaT55AY.1170.000423
ORF648K48NaaAaaT55AY.30.00005
ORF648K48delAAA---55AY.390.000124
ORF648K48NaaAaaT55AY.390.000124
ORF648K48KaaAaaG55B.10.000046
ORF648K48EAaaGaa55B.10.000046
ORF648K48IaAAaTT35B.10.000027
ORF648K48IaAaaTa25B.10.000018
ORF648K48KaaAaaG55B.1.1770.000066
ORF648K48NaaAaaC45B.1.20.000035
ORF648K48NaaAaaT15B.1.20.000009
ORF648K48SAAaTCa240.111111
ORF648K48SaAAaGC240.111111
ORF648K48SAAaTCa24All0
ORF648K48SaAAaGC24All0
ORF648K48NaaAaaT44AY.100.00212
ORF648K48NaaAaaT34AY.1190.000106
ORF648K48NaaAaaC14AY.1190.000035
ORF648K48RaAaaGa44AY.40.000006
ORF648K48delAAA---44AY.430.000018
ORF648K48EAaaGaa44AY.430.000018
ORF648K48EAaaGaa44AY.75.10.000721
ORF648K48NaaAaaT44AY.75.10.000721
ORF648K48QAaaCaa44B.1.1.70.000004
ORF648K48NaaAaaT44B.1.177.860.000734
ORF648K48NaaAaaT44C.370.000464
ORF648K48NaaAaaC44P.10.000063
ORF648K48del2AAa--a23All0
ORF648K48del2aAAa--13All0
ORF648K48NaaAaaT33AY.1000.000138
ORF648K48delAAA---33AY.1020.00008
ORF648K48delAAA---33AY.1180.000188
ORF648K48NaaAaaT33AY.1200.000112
ORF648K48KaaAaaG33AY.290.000047
ORF648K48IaAaaTa23AY.30.00002
ORF648K48IaAAaTT13AY.30.00001
ORF648K48XAaaTaa33AY.390.000074
ORF648K48del1aaAaa-33AY.40.000005
ORF648K48IaAaaTa23AY.40.000003
ORF648K48IaAAaTT13AY.40.000002
ORF648K48delAAA---33AY.420.000121
ORF648K48NaaAaaT33AY.420.000121
ORF648K48delAAA---33AY.440.000018
ORF648K48NaaAaaT33AY.9.20.00011
ORF648K48XAaaTaa33B.1.20.000026
ORF648K48IaAAaTT23B.1.20.000018
ORF648K48IaAaaTa13B.1.20.000009
ORF648K48NaaAaaT33B.1.2210.000213
ORF648K48EAaaGaa33B.1.2400.000647
ORF648K48IaAaaTa23P.1.10.000635
ORF648K48IaAAaTT13P.1.10.000318
ORF648K48RaAaaGa220.111111
ORF648K48TaAaaCa220.111111
ORF648K48NaaAaaC220.111111
ORF648K48AAAAGCG22All0
ORF648K48KaaAaaG22AY.1030.000012
ORF648K48delAAA---22AY.1030.000012
ORF648K48delAAA---22AY.1190.000071
ORF648K48KaaAaaG22AY.250.000012
ORF648K48EAaaGaa22AY.250.000012
ORF648K48RaAaaGa22AY.30.00002
ORF648K48KaaAaaG22AY.30.00002
ORF648K48NaaAaaT22AY.39.10.000079
ORF648K48TaAaaCa22AY.40.000003
ORF648K48del1Aaa-aa22AY.440.000012
ORF648K48NaaAaaT22AY.450.000243
ORF648K48NaaAaaT22AY.46.20.001271
ORF648K48EAaaGaa22AY.470.000062
ORF648K48TaAaaCa22AY.50.000041
ORF648K48NaaAaaT22AY.710.00095
ORF648K48EAaaGaa22B.1.1.1890.003026
ORF648K48IaAAaTT12B.1.1.5190.00004
ORF648K48IaAaaTa12B.1.1.5190.00004
ORF648K48NaaAaaT12B.1.1.5190.00004
ORF648K48NaaAaaC12B.1.1.5190.00004
ORF648K48del1Aaa-aa22B.1.1.70.000002
ORF648K48del2AAa--a22B.1.1.70.000002
ORF648K48KaaAaaG22B.1.1600.000062
ORF648K48NaaAaaT22B.1.1700.008621
ORF648K48AAAAGCG22B.1.177.210.000153
ORF648K48delAAA---22B.1.177.210.000153
ORF648K48KaaAaaG22B.1.20.000018
ORF648K48delAAA---22B.1.3510.000059
ORF648K48EAaaGaa22B.1.4290.000047
ORF648K48delAAA---22B.1.5250.000226
ORF648K48KaaAaaG22B.1.5260.000047
ORF648K48NaaAaaT12B.1.5260.000024
ORF648K48NaaAaaC12B.1.5260.000024
ORF648K48NaaAaaT22B.1.9.40.01227
ORF648K48KaaAaaG22P.10.000032
ORF648K48delAAA---22P.10.000032
ORF648K48IaAaaTa11A0.000387
ORF648K48XAaaTaa11A.2.20.001689
ORF648K48EAaaGaa11A.2.50.000499
ORF648K48NaaAaaT11A.23.10.000704
ORF648K48NaaAaaT11AY.10.000396
ORF648K48delAAA---11AY.1000.000046
ORF648K48del1Aaa-aa11AY.1000.000046
ORF648K48QAaaCaa11AY.1030.000006
ORF648K48delAAA---11AY.1060.000335
ORF648K48RaAaaGa11AY.1130.000142
ORF648K48delAAA---11AY.1130.000142
ORF648K48delAAA---11AY.1170.000085
ORF648K48KaaAaaG11AY.1170.000085
ORF648K48NaaAaaT11AY.1180.000063
ORF648K48GAAaGGa11AY.1190.000035
ORF648K48NaaAaaT11AY.120.10.000321
ORF648K48NaaAaaC11AY.170.008197
ORF648K48NaaAaaT11AY.200.000039
ORF648K48delAAA---11AY.200.000039
ORF648K48NaaAaaT11AY.23.10.000417
ORF648K48RaAaaGa11AY.250.000006
ORF648K48XAaaTaa11AY.250.000006
ORF648K48IaAAaTT11AY.260.000028
ORF648K48KaaAaaG11AY.260.000028
ORF648K48delAAA---11AY.270.000065
ORF648K48delAAA---11AY.290.000016
ORF648K48delAAA---11AY.30.00001
ORF648K48EAaaGaa11AY.3.10.000085
ORF648K48NaaAaaT11AY.3.10.000085
ORF648K48NaaAaaT11AY.300.000396
ORF648K48NaaAaaC11AY.340.000097
ORF648K48EAaaGaa11AY.350.000233
ORF648K48KaaAaaG11AY.390.000025
ORF648K48del1Aaa-aa11AY.390.000025
ORF648K48XAaaTaa11AY.40.000002
ORF648K48delAAA---11AY.4.20.000022
ORF648K48NaaAaaC11AY.4.20.000022
ORF648K48EAaaGaa11AY.410.000294
ORF648K48IaAaaTa11AY.420.00004
ORF648K48RaAaaGa11AY.430.000004
ORF648K48KaaAaaG11AY.440.000006
ORF648K48delAAA---11AY.450.000122
ORF648K48NaaAaaT11AY.460.000104
ORF648K48EAaaGaa11AY.46.40.000165
ORF648K48KaaAaaG11AY.46.40.000165
ORF648K48delAAA---11AY.470.000031
ORF648K48IaAAaTC11AY.470.000031
ORF648K48KaaAaaG11AY.590.00053
ORF648K48NaaAaaT11AY.640.000595
ORF648K48NaaAaaT11AY.670.000464
ORF648K48NaaAaaT11AY.7.10.000113
ORF648K48delAAA---11AY.730.000665
ORF648K48KaaAaaG11AY.750.000056
ORF648K48NaaAaaT11AY.820.001357
ORF648K48delAAA---11AY.840.000437
ORF648K48NaaAaaT11AY.90.000068
ORF648K48delAAA---11AY.980.000079
ORF648K48delAAA---11AY.990.001049
ORF648K48IaAAaTT11B0.000128
ORF648K48del1Aaa-aa11B.10.000009
ORF648K48delAAA---11B.10.000009
ORF648K48RaAaaGa11B.10.000009
ORF648K48XAaaTaa11B.10.000009
ORF648K48EAaaGaa11B.1.10.000018
ORF648K48EAaaGaa11B.1.1.2140.000055
ORF648K48RaAaaGa11B.1.1.2160.00089
ORF648K48XAaaTaa11B.1.1.70.000001
ORF648K48delAAA---11B.1.1470.000756
ORF648K48TaAaaCa11B.1.1600.000031
ORF648K48RaAaaGa11B.1.1770.000013
ORF648K48KaaAaaG11B.1.177.310.011494
ORF648K48EAaaGaa11B.1.177.430.001477
ORF648K48delAAA---11B.1.20.000009
ORF648K48EAaaGaa11B.1.20.000009
ORF648K48RaAaaGa11B.1.2100.002132
ORF648K48RaAaaGa11B.1.2290.009709
ORF648K48KaaAaaG11B.1.2400.000216
ORF648K48KaaAaaG11B.1.2430.00007
ORF648K48delAAA---11B.1.2430.00007
ORF648K48KaaAaaG11B.1.30.002618
ORF648K48EAaaGaa11B.1.3050.002151
ORF648K48EAaaGaa11B.1.3290.000608
ORF648K48NaaAaaT11B.1.3350.010309
ORF648K48IaAaaTa11B.1.360.000146
ORF648K48NaaAaaT11B.1.360.000146
ORF648K48KaaAaaG11B.1.36.290.000517
ORF648K48delAAA---11B.1.4040.001302
ORF648K48IaAaaTa11B.1.4280.00102
ORF648K48RaAaaGa11B.1.4290.000024
ORF648K48IaAAaTT11B.1.4430.004673
ORF648K48QAaaCaa11B.1.466.20.000391
ORF648K48XAaaTaa11B.1.4700.001404
ORF648K48IaAAaTT11B.1.5090.000866
ORF648K48KaaAaaG11B.1.5170.000427
ORF648K48delAAA---11B.1.5260.000024
ORF648K48del2aAAa--11B.1.5260.000024
ORF648K48RaAaaGa11B.1.5260.000024
ORF648K48KaaAaaG11B.1.5360.02381
ORF648K48delAAA---11B.1.5640.000426
ORF648K48delAAA---11B.1.617.10.000129
ORF648K48XAaaTaa11B.1.617.20.000004
ORF648K48delAAA---11B.1.617.30.002985
ORF648K48delAAA---11B.1.6270.00202
ORF648K48NaaAaaT11B.1.6290.013333
ORF648K48KaaAaaG11C.370.000116
ORF648K48NaaAaaT11C.37.10.002618
ORF648K48XAaaTaa11D.20.000075
ORF648K48NaaAaaT11P.1.10.000318
ORF648K48NaaAaaT11P.1.120.000484
ORF648K48NaaAaaC11P.1.140.000048
ORF648K48NaaAaaT11P.1.170.000162
ORF648K48NaaAaaT11P.1.70.000319