CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 48 | K48N | nonsyn | aaA | aaT | 35944 | 35894 | 0.998609 | 27343-27345 | |
ORF6 | 48 | K48N | nonsyn | aaA | aaC | 35944 | 50 | 0.00139105 | 27343-27345 | |
ORF6 | 48 | K48K | syn | aaA | aaG | 238 | 238 | 1 | 27343-27345 | |
ORF6 | 48 | K48E | nonsyn | Aaa | Gaa | 227 | 226 | 0.995595 | 27343-27345 | |
ORF6 | 48 | K48E | nonsyn | AaA | GaG | 227 | 1 | 0.00440529 | 27343-27345 | |
ORF6 | 48 | K48del | del | AAA | --- | 198 | 198 | 1 | 27343-27345 | |
ORF6 | 48 | K48T | nonsyn | aAa | aCa | 46 | 46 | 1 | 27343-27345 | |
ORF6 | 48 | K48I | nonsyn | aAa | aTa | 45 | 28 | 0.622222 | 27343-27345 | |
ORF6 | 48 | K48I | nonsyn | aAA | aTT | 45 | 15 | 0.333333 | 27343-27345 | |
ORF6 | 48 | K48I | nonsyn | aAA | aTC | 45 | 2 | 0.0444444 | 27343-27345 | |
ORF6 | 48 | K48R | nonsyn | aAa | aGa | 29 | 29 | 1 | 27343-27345 | |
ORF6 | 48 | K48X | nonsyn | Aaa | Taa | 14 | 14 | 1 | 27343-27345 | |
ORF6 | 48 | K48del1 | del | Aaa | -aa | 10 | 7 | 0.7 | 27343-27345 | |
ORF6 | 48 | K48del1 | del | aaA | aa- | 10 | 3 | 0.3 | 27343-27345 | |
ORF6 | 48 | K48G | nonsyn | AAa | GGa | 9 | 9 | 1 | 27343-27345 | |
ORF6 | 48 | K48Q | nonsyn | Aaa | Caa | 6 | 6 | 1 | 27343-27345 | |
ORF6 | 48 | K48S | nonsyn | AAa | TCa | 4 | 2 | 0.5 | 27343-27345 | |
ORF6 | 48 | K48S | nonsyn | aAA | aGC | 4 | 2 | 0.5 | 27343-27345 | |
ORF6 | 48 | K48del2 | del | AAa | --a | 3 | 2 | 0.666667 | 27343-27345 | |
ORF6 | 48 | K48del2 | del | aAA | a-- | 3 | 1 | 0.333333 | 27343-27345 | |
ORF6 | 48 | K48A | nonsyn | AAA | GCG | 2 | 2 | 1 | 27343-27345 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 48 | K48N | aaA | aaT | 35894 | 35944 | All | 0.006865 |
ORF6 | 48 | K48N | aaA | aaC | 50 | 35944 | All | 0.00001 |
ORF6 | 48 | K48N | aaA | aaT | 34933 | 34933 | AY.26 | 0.988959 |
ORF6 | 48 | K48N | aaA | aaT | 448 | 449 | AY.113 | 0.06379 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 449 | AY.113 | 0.000142 |
ORF6 | 48 | K48K | aaA | aaG | 238 | 238 | All | 0.000046 |
ORF6 | 48 | K48E | Aaa | Gaa | 226 | 227 | All | 0.000043 |
ORF6 | 48 | K48E | AaA | GaG | 1 | 227 | All | 0 |
ORF6 | 48 | K48del | AAA | --- | 198 | 198 | All | 0.000038 |
ORF6 | 48 | K48del | AAA | --- | 114 | 114 | AY.4 | 0.000177 |
ORF6 | 48 | K48N | aaA | aaT | 97 | 99 | B.1.617.2 | 0.000365 |
ORF6 | 48 | K48N | aaA | aaC | 2 | 99 | B.1.617.2 | 0.000008 |
ORF6 | 48 | K48K | aaA | aaG | 83 | 83 | AY.39.1 | 0.003288 |
ORF6 | 48 | K48E | Aaa | Gaa | 77 | 77 | B.1.1.7 | 0.000069 |
ORF6 | 48 | K48E | Aaa | Gaa | 76 | 76 | B.1.351 | 0.002259 |
ORF6 | 48 | K48N | aaA | aaT | 61 | 67 | AY.103 | 0.000379 |
ORF6 | 48 | K48N | aaA | aaC | 6 | 67 | AY.103 | 0.000037 |
ORF6 | 48 | K48N | aaA | aaT | 53 | 53 | AY.44 | 0.000323 |
ORF6 | 48 | K48N | aaA | aaT | 47 | 47 | AY.75 | 0.002633 |
ORF6 | 48 | K48T | aAa | aCa | 46 | 46 | All | 0.000009 |
ORF6 | 48 | K48I | aAa | aTa | 28 | 45 | All | 0.000005 |
ORF6 | 48 | K48I | aAA | aTT | 15 | 45 | All | 0.000003 |
ORF6 | 48 | K48I | aAA | aTC | 2 | 45 | All | 0 |
ORF6 | 48 | K48N | aaA | aaT | 32 | 32 | AY.120.2 | 0.041131 |
ORF6 | 48 | K48R | aAa | aGa | 29 | 29 | All | 0.000006 |
ORF6 | 48 | K48K | aaA | aaG | 29 | 29 | AY.4 | 0.000045 |
ORF6 | 48 | K48K | aaA | aaG | 26 | 26 | AY.43 | 0.000115 |
ORF6 | 48 | K48N | aaA | aaT | 21 | 24 | B.1 | 0.000192 |
ORF6 | 48 | K48N | aaA | aaC | 3 | 24 | B.1 | 0.000027 |
ORF6 | 48 | K48T | aAa | aCa | 20 | 20 | AY.99.2 | 0.001843 |
ORF6 | 48 | K48N | aaA | aaC | 16 | 20 | B.1.1.7 | 0.000014 |
ORF6 | 48 | K48N | aaA | aaT | 4 | 20 | B.1.1.7 | 0.000004 |
ORF6 | 48 | K48T | aAa | aCa | 19 | 19 | P.2 | 0.003546 |
ORF6 | 48 | K48N | aaA | aaT | 17 | 17 | AY.43 | 0.000075 |
ORF6 | 48 | K48K | aaA | aaG | 16 | 16 | AY.113 | 0.002278 |
ORF6 | 48 | K48K | aaA | aaG | 16 | 16 | B.1.1.7 | 0.000014 |
ORF6 | 48 | K48X | Aaa | Taa | 14 | 14 | All | 0.000003 |
ORF6 | 48 | K48N | aaA | aaT | 12 | 13 | AY.47 | 0.000373 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 13 | AY.47 | 0.000031 |
ORF6 | 48 | K48K | aaA | aaG | 13 | 13 | B.1.617.2 | 0.000049 |
ORF6 | 48 | K48N | aaA | aaT | 10 | 11 | AY.25 | 0.00006 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 11 | AY.25 | 0.000006 |
ORF6 | 48 | K48N | aaA | aaT | 11 | 11 | B | 0.001406 |
ORF6 | 48 | K48R | aAa | aGa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF6 | 48 | K48del1 | Aaa | -aa | 7 | 10 | All | 0.000001 |
ORF6 | 48 | K48del1 | aaA | aa- | 3 | 10 | All | 0.000001 |
ORF6 | 48 | K48E | Aaa | Gaa | 10 | 10 | AY.44 | 0.000061 |
ORF6 | 48 | K48del | AAA | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF6 | 48 | K48N | aaA | aaT | 7 | 10 | B.1.177 | 0.000092 |
ORF6 | 48 | K48N | aaA | aaC | 3 | 10 | B.1.177 | 0.00004 |
ORF6 | 48 | K48G | AAa | GGa | 9 | 9 | All | 0.000002 |
ORF6 | 48 | K48N | aaA | aaT | 9 | 9 | AY.52 | 0.007329 |
ORF6 | 48 | K48N | aaA | aaT | 9 | 9 | AY.62 | 0.003922 |
ORF6 | 48 | K48E | Aaa | Gaa | 9 | 9 | B.1.509 | 0.007792 |
ORF6 | 48 | K48G | AAa | GGa | 8 | 8 | AY.3 | 0.00008 |
ORF6 | 48 | K48del | AAA | --- | 8 | 8 | AY.77 | 0.009019 |
ORF6 | 48 | K48K | aaA | aaG | 8 | 8 | B.1.1.348 | 0.006369 |
ORF6 | 48 | K48del | AAA | --- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF6 | 48 | K48E | Aaa | Gaa | 7 | 8 | B.1.617.2 | 0.000026 |
ORF6 | 48 | K48E | AaA | GaG | 1 | 8 | B.1.617.2 | 0.000004 |
ORF6 | 48 | K48N | aaA | aaT | 7 | 7 | AY.46.6 | 0.000505 |
ORF6 | 48 | K48Q | Aaa | Caa | 6 | 6 | All | 0.000001 |
ORF6 | 48 | K48N | aaA | aaT | 6 | 6 | AY.4 | 0.000009 |
ORF6 | 48 | K48E | Aaa | Gaa | 6 | 6 | AY.4 | 0.000009 |
ORF6 | 48 | K48N | aaA | aaT | 6 | 6 | AY.54 | 0.000572 |
ORF6 | 48 | K48N | aaA | aaT | 6 | 6 | AY.61 | 0.000629 |
ORF6 | 48 | K48N | aaA | aaT | 6 | 6 | AY.92 | 0.001724 |
ORF6 | 48 | K48N | aaA | aaT | 6 | 6 | AY.93 | 0.001638 |
ORF6 | 48 | K48I | aAa | aTa | 4 | 6 | B.1.1.7 | 0.000004 |
ORF6 | 48 | K48I | aAA | aTC | 1 | 6 | B.1.1.7 | 0.000001 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 6 | B.1.1.7 | 0.000001 |
ORF6 | 48 | K48I | aAa | aTa | 5 | 6 | B.1.617.2 | 0.000019 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 6 | B.1.617.2 | 0.000004 |
ORF6 | 48 | K48E | Aaa | Gaa | 6 | 6 | B.1.637 | 0.000438 |
ORF6 | 48 | K48K | aaA | aaG | 5 | 5 | AY.102 | 0.000133 |
ORF6 | 48 | K48I | aAa | aTa | 5 | 5 | AY.103 | 0.000031 |
ORF6 | 48 | K48N | aaA | aaT | 5 | 5 | AY.117 | 0.000423 |
ORF6 | 48 | K48N | aaA | aaT | 5 | 5 | AY.3 | 0.00005 |
ORF6 | 48 | K48del | AAA | --- | 5 | 5 | AY.39 | 0.000124 |
ORF6 | 48 | K48N | aaA | aaT | 5 | 5 | AY.39 | 0.000124 |
ORF6 | 48 | K48K | aaA | aaG | 5 | 5 | B.1 | 0.000046 |
ORF6 | 48 | K48E | Aaa | Gaa | 5 | 5 | B.1 | 0.000046 |
ORF6 | 48 | K48I | aAA | aTT | 3 | 5 | B.1 | 0.000027 |
ORF6 | 48 | K48I | aAa | aTa | 2 | 5 | B.1 | 0.000018 |
ORF6 | 48 | K48K | aaA | aaG | 5 | 5 | B.1.177 | 0.000066 |
ORF6 | 48 | K48N | aaA | aaC | 4 | 5 | B.1.2 | 0.000035 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 5 | B.1.2 | 0.000009 |
ORF6 | 48 | K48S | AAa | TCa | 2 | 4 | 0.111111 | |
ORF6 | 48 | K48S | aAA | aGC | 2 | 4 | 0.111111 | |
ORF6 | 48 | K48S | AAa | TCa | 2 | 4 | All | 0 |
ORF6 | 48 | K48S | aAA | aGC | 2 | 4 | All | 0 |
ORF6 | 48 | K48N | aaA | aaT | 4 | 4 | AY.10 | 0.00212 |
ORF6 | 48 | K48N | aaA | aaT | 3 | 4 | AY.119 | 0.000106 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 4 | AY.119 | 0.000035 |
ORF6 | 48 | K48R | aAa | aGa | 4 | 4 | AY.4 | 0.000006 |
ORF6 | 48 | K48del | AAA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF6 | 48 | K48E | Aaa | Gaa | 4 | 4 | AY.43 | 0.000018 |
ORF6 | 48 | K48E | Aaa | Gaa | 4 | 4 | AY.75.1 | 0.000721 |
ORF6 | 48 | K48N | aaA | aaT | 4 | 4 | AY.75.1 | 0.000721 |
ORF6 | 48 | K48Q | Aaa | Caa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF6 | 48 | K48N | aaA | aaT | 4 | 4 | B.1.177.86 | 0.000734 |
ORF6 | 48 | K48N | aaA | aaT | 4 | 4 | C.37 | 0.000464 |
ORF6 | 48 | K48N | aaA | aaC | 4 | 4 | P.1 | 0.000063 |
ORF6 | 48 | K48del2 | AAa | --a | 2 | 3 | All | 0 |
ORF6 | 48 | K48del2 | aAA | a-- | 1 | 3 | All | 0 |
ORF6 | 48 | K48N | aaA | aaT | 3 | 3 | AY.100 | 0.000138 |
ORF6 | 48 | K48del | AAA | --- | 3 | 3 | AY.102 | 0.00008 |
ORF6 | 48 | K48del | AAA | --- | 3 | 3 | AY.118 | 0.000188 |
ORF6 | 48 | K48N | aaA | aaT | 3 | 3 | AY.120 | 0.000112 |
ORF6 | 48 | K48K | aaA | aaG | 3 | 3 | AY.29 | 0.000047 |
ORF6 | 48 | K48I | aAa | aTa | 2 | 3 | AY.3 | 0.00002 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 3 | AY.3 | 0.00001 |
ORF6 | 48 | K48X | Aaa | Taa | 3 | 3 | AY.39 | 0.000074 |
ORF6 | 48 | K48del1 | aaA | aa- | 3 | 3 | AY.4 | 0.000005 |
ORF6 | 48 | K48I | aAa | aTa | 2 | 3 | AY.4 | 0.000003 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 3 | AY.4 | 0.000002 |
ORF6 | 48 | K48del | AAA | --- | 3 | 3 | AY.42 | 0.000121 |
ORF6 | 48 | K48N | aaA | aaT | 3 | 3 | AY.42 | 0.000121 |
ORF6 | 48 | K48del | AAA | --- | 3 | 3 | AY.44 | 0.000018 |
ORF6 | 48 | K48N | aaA | aaT | 3 | 3 | AY.9.2 | 0.00011 |
ORF6 | 48 | K48X | Aaa | Taa | 3 | 3 | B.1.2 | 0.000026 |
ORF6 | 48 | K48I | aAA | aTT | 2 | 3 | B.1.2 | 0.000018 |
ORF6 | 48 | K48I | aAa | aTa | 1 | 3 | B.1.2 | 0.000009 |
ORF6 | 48 | K48N | aaA | aaT | 3 | 3 | B.1.221 | 0.000213 |
ORF6 | 48 | K48E | Aaa | Gaa | 3 | 3 | B.1.240 | 0.000647 |
ORF6 | 48 | K48I | aAa | aTa | 2 | 3 | P.1.1 | 0.000635 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 3 | P.1.1 | 0.000318 |
ORF6 | 48 | K48R | aAa | aGa | 2 | 2 | 0.111111 | |
ORF6 | 48 | K48T | aAa | aCa | 2 | 2 | 0.111111 | |
ORF6 | 48 | K48N | aaA | aaC | 2 | 2 | 0.111111 | |
ORF6 | 48 | K48A | AAA | GCG | 2 | 2 | All | 0 |
ORF6 | 48 | K48K | aaA | aaG | 2 | 2 | AY.103 | 0.000012 |
ORF6 | 48 | K48del | AAA | --- | 2 | 2 | AY.103 | 0.000012 |
ORF6 | 48 | K48del | AAA | --- | 2 | 2 | AY.119 | 0.000071 |
ORF6 | 48 | K48K | aaA | aaG | 2 | 2 | AY.25 | 0.000012 |
ORF6 | 48 | K48E | Aaa | Gaa | 2 | 2 | AY.25 | 0.000012 |
ORF6 | 48 | K48R | aAa | aGa | 2 | 2 | AY.3 | 0.00002 |
ORF6 | 48 | K48K | aaA | aaG | 2 | 2 | AY.3 | 0.00002 |
ORF6 | 48 | K48N | aaA | aaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF6 | 48 | K48T | aAa | aCa | 2 | 2 | AY.4 | 0.000003 |
ORF6 | 48 | K48del1 | Aaa | -aa | 2 | 2 | AY.44 | 0.000012 |
ORF6 | 48 | K48N | aaA | aaT | 2 | 2 | AY.45 | 0.000243 |
ORF6 | 48 | K48N | aaA | aaT | 2 | 2 | AY.46.2 | 0.001271 |
ORF6 | 48 | K48E | Aaa | Gaa | 2 | 2 | AY.47 | 0.000062 |
ORF6 | 48 | K48T | aAa | aCa | 2 | 2 | AY.5 | 0.000041 |
ORF6 | 48 | K48N | aaA | aaT | 2 | 2 | AY.71 | 0.00095 |
ORF6 | 48 | K48E | Aaa | Gaa | 2 | 2 | B.1.1.189 | 0.003026 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 2 | B.1.1.519 | 0.00004 |
ORF6 | 48 | K48I | aAa | aTa | 1 | 2 | B.1.1.519 | 0.00004 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 2 | B.1.1.519 | 0.00004 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 2 | B.1.1.519 | 0.00004 |
ORF6 | 48 | K48del1 | Aaa | -aa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF6 | 48 | K48del2 | AAa | --a | 2 | 2 | B.1.1.7 | 0.000002 |
ORF6 | 48 | K48K | aaA | aaG | 2 | 2 | B.1.160 | 0.000062 |
ORF6 | 48 | K48N | aaA | aaT | 2 | 2 | B.1.170 | 0.008621 |
ORF6 | 48 | K48A | AAA | GCG | 2 | 2 | B.1.177.21 | 0.000153 |
ORF6 | 48 | K48del | AAA | --- | 2 | 2 | B.1.177.21 | 0.000153 |
ORF6 | 48 | K48K | aaA | aaG | 2 | 2 | B.1.2 | 0.000018 |
ORF6 | 48 | K48del | AAA | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF6 | 48 | K48E | Aaa | Gaa | 2 | 2 | B.1.429 | 0.000047 |
ORF6 | 48 | K48del | AAA | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF6 | 48 | K48K | aaA | aaG | 2 | 2 | B.1.526 | 0.000047 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 2 | B.1.526 | 0.000024 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 2 | B.1.526 | 0.000024 |
ORF6 | 48 | K48N | aaA | aaT | 2 | 2 | B.1.9.4 | 0.01227 |
ORF6 | 48 | K48K | aaA | aaG | 2 | 2 | P.1 | 0.000032 |
ORF6 | 48 | K48del | AAA | --- | 2 | 2 | P.1 | 0.000032 |
ORF6 | 48 | K48I | aAa | aTa | 1 | 1 | A | 0.000387 |
ORF6 | 48 | K48X | Aaa | Taa | 1 | 1 | A.2.2 | 0.001689 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | A.2.5 | 0.000499 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | A.23.1 | 0.000704 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.1 | 0.000396 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.100 | 0.000046 |
ORF6 | 48 | K48del1 | Aaa | -aa | 1 | 1 | AY.100 | 0.000046 |
ORF6 | 48 | K48Q | Aaa | Caa | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.106 | 0.000335 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | AY.113 | 0.000142 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.117 | 0.000085 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | AY.117 | 0.000085 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.118 | 0.000063 |
ORF6 | 48 | K48G | AAa | GGa | 1 | 1 | AY.119 | 0.000035 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.120.1 | 0.000321 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 1 | AY.17 | 0.008197 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.20 | 0.000039 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.20 | 0.000039 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.23.1 | 0.000417 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | AY.25 | 0.000006 |
ORF6 | 48 | K48X | Aaa | Taa | 1 | 1 | AY.25 | 0.000006 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 1 | AY.26 | 0.000028 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | AY.26 | 0.000028 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.27 | 0.000065 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | AY.3.1 | 0.000085 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.30 | 0.000396 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 1 | AY.34 | 0.000097 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | AY.35 | 0.000233 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 48 | K48del1 | Aaa | -aa | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 48 | K48X | Aaa | Taa | 1 | 1 | AY.4 | 0.000002 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 1 | AY.4.2 | 0.000022 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | AY.41 | 0.000294 |
ORF6 | 48 | K48I | aAa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | AY.43 | 0.000004 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.45 | 0.000122 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.46 | 0.000104 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | AY.46.4 | 0.000165 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | AY.46.4 | 0.000165 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.47 | 0.000031 |
ORF6 | 48 | K48I | aAA | aTC | 1 | 1 | AY.47 | 0.000031 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | AY.59 | 0.00053 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.64 | 0.000595 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.67 | 0.000464 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.73 | 0.000665 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | AY.75 | 0.000056 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.82 | 0.001357 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | AY.9 | 0.000068 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.98 | 0.000079 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 1 | B | 0.000128 |
ORF6 | 48 | K48del1 | Aaa | -aa | 1 | 1 | B.1 | 0.000009 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1 | 0.000009 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | B.1 | 0.000009 |
ORF6 | 48 | K48X | Aaa | Taa | 1 | 1 | B.1 | 0.000009 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF6 | 48 | K48X | Aaa | Taa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1.147 | 0.000756 |
ORF6 | 48 | K48T | aAa | aCa | 1 | 1 | B.1.160 | 0.000031 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | B.1.177 | 0.000013 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | B.1.177.31 | 0.011494 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | B.1.177.43 | 0.001477 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | B.1.2 | 0.000009 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | B.1.210 | 0.002132 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | B.1.229 | 0.009709 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | B.1.240 | 0.000216 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | B.1.243 | 0.00007 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | B.1.3 | 0.002618 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | B.1.305 | 0.002151 |
ORF6 | 48 | K48E | Aaa | Gaa | 1 | 1 | B.1.329 | 0.000608 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | B.1.335 | 0.010309 |
ORF6 | 48 | K48I | aAa | aTa | 1 | 1 | B.1.36 | 0.000146 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | B.1.36 | 0.000146 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1.404 | 0.001302 |
ORF6 | 48 | K48I | aAa | aTa | 1 | 1 | B.1.428 | 0.00102 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | B.1.429 | 0.000024 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 1 | B.1.443 | 0.004673 |
ORF6 | 48 | K48Q | Aaa | Caa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF6 | 48 | K48X | Aaa | Taa | 1 | 1 | B.1.470 | 0.001404 |
ORF6 | 48 | K48I | aAA | aTT | 1 | 1 | B.1.509 | 0.000866 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | B.1.517 | 0.000427 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF6 | 48 | K48del2 | aAA | a-- | 1 | 1 | B.1.526 | 0.000024 |
ORF6 | 48 | K48R | aAa | aGa | 1 | 1 | B.1.526 | 0.000024 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | B.1.536 | 0.02381 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF6 | 48 | K48X | Aaa | Taa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF6 | 48 | K48del | AAA | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | B.1.629 | 0.013333 |
ORF6 | 48 | K48K | aaA | aaG | 1 | 1 | C.37 | 0.000116 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | C.37.1 | 0.002618 |
ORF6 | 48 | K48X | Aaa | Taa | 1 | 1 | D.2 | 0.000075 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | P.1.1 | 0.000318 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | P.1.12 | 0.000484 |
ORF6 | 48 | K48N | aaA | aaC | 1 | 1 | P.1.14 | 0.000048 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | P.1.17 | 0.000162 |
ORF6 | 48 | K48N | aaA | aaT | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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