CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF6 : CodonNum = 46

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF646E46VnonsyngAggTg1565115651127337-27339
ORF646E46deldelGAG---200200127337-27339
ORF646E46AnonsyngAggCg1831820.99453627337-27339
ORF646E46AnonsyngAGgCC18310.0054644827337-27339
ORF646E46GnonsyngAggGg122122127337-27339
ORF646E46EsyngaGgaA104104127337-27339
ORF646E46DnonsyngaGgaT1031000.97087427337-27339
ORF646E46DnonsyngaGgaC10330.029126227337-27339
ORF646E46XnonsynGagTag70600.85714327337-27339
ORF646E46XnonsynGaGTaA7090.12857127337-27339
ORF646E46XnonsynGAGTGA7010.014285727337-27339
ORF646E46KnonsynGagAag39270.69230827337-27339
ORF646E46KnonsynGaGAaA39120.30769227337-27339
ORF646E46LnonsynGAgCTg66127337-27339
ORF646E46del1delgaGga-530.627337-27339
ORF646E46del1delGAg-Tg510.227337-27339
ORF646E46del1delGag-ag510.227337-27339
ORF646E46RnonsynGAGAGA44127337-27339
ORF646E46QnonsynGagCag33127337-27339
ORF646E46TnonsynGAGACA320.66666727337-27339
ORF646E46YnonsynGaGTaT320.66666727337-27339
ORF646E46YnonsynGaGTaC310.33333327337-27339
ORF646E46TnonsynGAgACg310.33333327337-27339
ORF646E46NnonsynGaGAaT22127337-27339
ORF646E46del2delGAg--g11127337-27339
ORF646E46MnonsynGAgATg11127337-27339

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF646E46VgAggTg1565115651All0.002993
ORF646E46VgAggTg1490714907AY.1180.933906
ORF646E46VgAggTg457457B.1.617.20.001721
ORF646E46delGAG---200200All0.000038
ORF646E46AgAggCg182183All0.000035
ORF646E46AgAGgCC1183All0
ORF646E46GgAggGg122122All0.000023
ORF646E46delGAG---114114AY.40.000177
ORF646E46EgaGgaA104104All0.00002
ORF646E46DgaGgaT100103All0.000019
ORF646E46DgaGgaC3103All0.000001
ORF646E46XGagTag6070All0.000011
ORF646E46XGaGTaA970All0.000002
ORF646E46XGAGTGA170All0
ORF646E46AgAggCg6767AY.1180.004197
ORF646E46EgaGgaA6767B.1.177.210.005123
ORF646E46VgAggTg4949AY.250.000295
ORF646E46GgAggGg4747AY.250.000283
ORF646E46AgAggCg4343AY.1020.00114
ORF646E46KGagAag2739All0.000005
ORF646E46KGaGAaA1239All0.000002
ORF646E46VgAggTg3333AY.390.000815
ORF646E46VgAggTg2525AY.1100.002817
ORF646E46VgAggTg2020AY.1020.00053
ORF646E46AgAggCg2020B.1.1.70.000018
ORF646E46GgAggGg1919B.1.1.70.000017
ORF646E46DgaGgaT1818AY.40.000028
ORF646E46KGaGAaA1016B.1.177.210.000765
ORF646E46KGagAag616B.1.177.210.000459
ORF646E46VgAggTg1414AY.440.000085
ORF646E46VgAggTg1313AY.430.000058
ORF646E46VgAggTg1313AY.920.003735
ORF646E46DgaGgaT1212AY.1030.000075
ORF646E46AgAggCg1112B.1.617.20.000041
ORF646E46AgAGgCC112B.1.617.20.000004
ORF646E46VgAggTg1111AY.980.000869
ORF646E46delGAG---1111B.1.1.70.00001
ORF646E46DgaGgaT1111B.1.20.000097
ORF646E46VgAggTg1010AY.1030.000062
ORF646E46VgAggTg1010AY.1170.000845
ORF646E46VgAggTg1010AY.330.000668
ORF646E46DgaGgaT99AY.30.00009
ORF646E46XGagTag79B.1.1.70.000006
ORF646E46XGaGTaA29B.1.1.70.000002
ORF646E46XGagTag88AY.40.000012
ORF646E46DgaGgaT88AY.430.000035
ORF646E46VgAggTg88AY.460.000833
ORF646E46VgAggTg88AY.9.20.000294
ORF646E46XGaGTaA58B.1.177.210.000382
ORF646E46XGagTag28B.1.177.210.000153
ORF646E46XGAGTGA18B.1.177.210.000076
ORF646E46delGAG---88B.1.617.20.00003
ORF646E46VgAggTg77AY.450.000852
ORF646E46AgAggCg77AY.470.000218
ORF646E46delGAG---77AY.770.007892
ORF646E46XGagTag77B.10.000064
ORF646E46EgaGgaA77B.1.1.70.000006
ORF646E46DgaGgaT77B.1.1.70.000006
ORF646E46LGAgCTg66All0.000001
ORF646E46GgAggGg66AY.1130.000854
ORF646E46XGagTag66AY.250.000036
ORF646E46LGAgCTg66B.1.177.210.000459
ORF646E46del1gaGga-35All0.000001
ORF646E46del1GAg-Tg15All0
ORF646E46del1Gag-ag15All0
ORF646E46KGagAag55AY.1000.00023
ORF646E46GgAggGg55AY.290.000079
ORF646E46delGAG---55AY.390.000124
ORF646E46GgAggGg55B.10.000046
ORF646E46VgAggTg55B.10.000046
ORF646E46DgaGgaC240.111111
ORF646E46DgaGgaT240.111111
ORF646E46RGAGAGA44All0.000001
ORF646E46VgAggTg44AY.1160.001147
ORF646E46VgAggTg44AY.1190.000141
ORF646E46AgAggCg44AY.430.000018
ORF646E46delGAG---44AY.430.000018
ORF646E46GgAggGg44AY.430.000018
ORF646E46DgaGgaT44AY.440.000024
ORF646E46GgAggGg44AY.440.000024
ORF646E46AgAggCg44AY.5.30.00135
ORF646E46XGagTag44AY.980.000316
ORF646E46KGagAag44B.1.617.20.000015
ORF646E46QGagCag33All0.000001
ORF646E46YGaGTaT23All0
ORF646E46TGAGACA23All0
ORF646E46YGaGTaC13All0
ORF646E46TGAgACg13All0
ORF646E46delGAG---33AY.1020.00008
ORF646E46EgaGgaA33AY.1020.00008
ORF646E46XGagTag33AY.1030.000019
ORF646E46VgAggTg33AY.1050.001929
ORF646E46VgAggTg33AY.1090.002219
ORF646E46DgaGgaT33AY.1170.000254
ORF646E46delGAG---33AY.1180.000188
ORF646E46EgaGgaA33AY.250.000018
ORF646E46DgaGgaT33AY.250.000018
ORF646E46VgAggTg33AY.30.00003
ORF646E46XGagTag33AY.360.000445
ORF646E46delGAG---33AY.420.000121
ORF646E46EgaGgaA33AY.430.000013
ORF646E46delGAG---33AY.440.000018
ORF646E46VgAggTg33B0.000383
ORF646E46GgAggGg33B.1.1.3860.2
ORF646E46KGagAag23B.1.1.70.000002
ORF646E46KGaGAaA13B.1.1.70.000001
ORF646E46EgaGgaA33B.1.1770.00004
ORF646E46DgaGgaT33B.1.258.170.000312
ORF646E46XGagTag33B.1.617.20.000011
ORF646E46AgAggCg33C.370.000348
ORF646E46EgaGgaA220.111111
ORF646E46NGaGAaT220.111111
ORF646E46XGaGTaA220.111111
ORF646E46TGAGACA220.111111
ORF646E46RGAGAGA220.111111
ORF646E46NGaGAaT22All0
ORF646E46delGAG---22AY.1030.000012
ORF646E46GgAggGg22AY.1030.000012
ORF646E46VgAggTg22AY.1040.003968
ORF646E46AgAggCg22AY.1170.000169
ORF646E46DgaGgaT22AY.1190.000071
ORF646E46delGAG---22AY.1190.000071
ORF646E46AgAggCg22AY.1200.000074
ORF646E46XGagTag22AY.130.000322
ORF646E46GgAggGg22AY.200.000078
ORF646E46EgaGgaA22AY.270.000129
ORF646E46VgAggTg22AY.40.000003
ORF646E46VgAggTg22AY.420.00008
ORF646E46KGagAag22AY.440.000012
ORF646E46delGAG---22AY.470.000062
ORF646E46VgAggTg22AY.470.000062
ORF646E46DgaGgaT22AY.50.000041
ORF646E46AgAggCg22AY.5.40.000553
ORF646E46VgAggTg22AY.540.000191
ORF646E46XGagTag22AY.60.000082
ORF646E46DgaGgaT22AY.700.000417
ORF646E46VgAggTg22AY.750.000112
ORF646E46VgAggTg22AY.950.001522
ORF646E46AgAggCg22AY.980.000158
ORF646E46DgaGgaT22B.1.1.5190.000079
ORF646E46QGagCag22B.1.1.70.000002
ORF646E46XGagTag22B.1.1600.000062
ORF646E46AgAggCg22B.1.1770.000026
ORF646E46GgAggGg22B.1.1770.000026
ORF646E46delGAG---22B.1.177.210.000153
ORF646E46del1gaGga-12B.1.177.210.000076
ORF646E46del1GAg-Tg12B.1.177.210.000076
ORF646E46AgAggCg22B.1.177.620.002384
ORF646E46delGAG---22B.1.20.000018
ORF646E46delGAG---22B.1.3510.000059
ORF646E46delGAG---22B.1.5250.000226
ORF646E46KGagAag22B.1.5260.000047
ORF646E46GgAggGg22B.1.617.20.000008
ORF646E46del1gaGga-22B.1.617.20.000008
ORF646E46XGagTag22D.20.00015
ORF646E46delGAG---22P.10.000032
ORF646E46VgAggTg22P.1.150.000465
ORF646E46MGAgATg11All0
ORF646E46del2GAg--g11All0
ORF646E46delGAG---11AY.1000.000046
ORF646E46EgaGgaA11AY.1030.000006
ORF646E46delGAG---11AY.1060.000335
ORF646E46DgaGgaT11AY.1110.000183
ORF646E46VgAggTg11AY.1130.000142
ORF646E46AgAggCg11AY.1130.000142
ORF646E46delGAG---11AY.1130.000142
ORF646E46VgAggTg11AY.1140.000231
ORF646E46GgAggGg11AY.1140.000231
ORF646E46delGAG---11AY.1170.000085
ORF646E46TGAgACg11AY.1190.000035
ORF646E46DgaGgaT11AY.1200.000037
ORF646E46GgAggGg11AY.1210.000135
ORF646E46GgAggGg11AY.190.00114
ORF646E46delGAG---11AY.200.000039
ORF646E46AgAggCg11AY.230.00007
ORF646E46EgaGgaA11AY.230.00007
ORF646E46AgAggCg11AY.250.000006
ORF646E46GgAggGg11AY.260.000028
ORF646E46delGAG---11AY.270.000065
ORF646E46VgAggTg11AY.290.000016
ORF646E46delGAG---11AY.290.000016
ORF646E46EgaGgaA11AY.30.00001
ORF646E46delGAG---11AY.30.00001
ORF646E46GgAggGg11AY.30.00001
ORF646E46KGagAag11AY.30.00001
ORF646E46XGagTag11AY.30.00001
ORF646E46GgAggGg11AY.360.000148
ORF646E46AgAggCg11AY.390.000025
ORF646E46YGaGTaC11AY.390.000025
ORF646E46KGagAag11AY.39.10.00004
ORF646E46AgAggCg11AY.40.000002
ORF646E46EgaGgaA11AY.40.000002
ORF646E46GgAggGg11AY.40.000002
ORF646E46delGAG---11AY.4.20.000022
ORF646E46VgAggTg11AY.4.50.000107
ORF646E46QGagCag11AY.430.000004
ORF646E46XGagTag11AY.430.000004
ORF646E46del2GAg--g11AY.440.000006
ORF646E46delGAG---11AY.450.000122
ORF646E46XGagTag11AY.450.000122
ORF646E46AgAggCg11AY.460.000104
ORF646E46VgAggTg11AY.46.30.000934
ORF646E46VgAggTg11AY.46.40.000165
ORF646E46DgaGgaT11AY.46.60.000072
ORF646E46XGagTag11AY.46.60.000072
ORF646E46GgAggGg11AY.470.000031
ORF646E46VgAggTg11AY.530.000288
ORF646E46VgAggTg11AY.610.000105
ORF646E46VgAggTg11AY.680.000274
ORF646E46delGAG---11AY.730.000665
ORF646E46GgAggGg11AY.750.000056
ORF646E46VgAggTg11AY.820.001357
ORF646E46delGAG---11AY.840.000437
ORF646E46delGAG---11AY.980.000079
ORF646E46delGAG---11AY.990.001049
ORF646E46AgAggCg11AZ.30.00152
ORF646E46DgaGgaC11B.10.000009
ORF646E46EgaGgaA11B.10.000009
ORF646E46delGAG---11B.10.000009
ORF646E46KGagAag11B.10.000009
ORF646E46RGAGAGA11B.10.000009
ORF646E46KGaGAaA11B.1.10.000018
ORF646E46GgAggGg11B.1.10.000018
ORF646E46AgAggCg11B.1.10.000018
ORF646E46EgaGgaA11B.1.1.1610.003534
ORF646E46XGagTag11B.1.1.1890.001513
ORF646E46EgaGgaA11B.1.1.1960.005714
ORF646E46GgAggGg11B.1.1.2140.000055
ORF646E46AgAggCg11B.1.1.2160.00089
ORF646E46GgAggGg11B.1.1.3060.000438
ORF646E46XGagTag11B.1.1.4090.002833
ORF646E46YGaGTaT11B.1.1.4090.002833
ORF646E46DgaGgaT11B.1.1.4090.002833
ORF646E46EgaGgaA11B.1.1.4340.000349
ORF646E46EgaGgaA11B.1.1.5190.00004
ORF646E46GgAggGg11B.1.1.5250.005464
ORF646E46del1Gag-ag11B.1.1.70.000001
ORF646E46YGaGTaT11B.1.1.70.000001
ORF646E46delGAG---11B.1.1470.000756
ORF646E46DgaGgaT11B.1.1600.000031
ORF646E46XGagTag11B.1.1770.000013
ORF646E46MGAgATg11B.1.177.210.000076
ORF646E46RGAGAGA11B.1.177.210.000076
ORF646E46DgaGgaT11B.1.177.360.016129
ORF646E46DgaGgaT11B.1.177.860.000183
ORF646E46VgAggTg11B.1.20.000009
ORF646E46EgaGgaA11B.1.20.000009
ORF646E46GgAggGg11B.1.20.000009
ORF646E46KGagAag11B.1.20.000009
ORF646E46XGagTag11B.1.20.000009
ORF646E46AgAggCg11B.1.2390.001221
ORF646E46GgAggGg11B.1.2430.00007
ORF646E46delGAG---11B.1.2430.00007
ORF646E46DgaGgaT11B.1.2580.000067
ORF646E46KGagAag11B.1.2580.000067
ORF646E46DgaGgaT11B.1.2600.003344
ORF646E46VgAggTg11B.1.3350.010309
ORF646E46EgaGgaA11B.1.360.000146
ORF646E46KGagAag11B.1.3960.000706
ORF646E46delGAG---11B.1.4040.001302
ORF646E46GgAggGg11B.1.4290.000024
ORF646E46DgaGgaT11B.1.4530.003236
ORF646E46delGAG---11B.1.5260.000024
ORF646E46DgaGgaT11B.1.5260.000024
ORF646E46EgaGgaA11B.1.5510.00129
ORF646E46delGAG---11B.1.5640.000426
ORF646E46VgAggTg11B.1.5960.000087
ORF646E46GgAggGg11B.1.5960.000087
ORF646E46GgAggGg11B.1.6090.000479
ORF646E46delGAG---11B.1.617.10.000129
ORF646E46EgaGgaA11B.1.617.20.000004
ORF646E46delGAG---11B.1.617.30.002985
ORF646E46AgAggCg11B.1.6210.000089
ORF646E46VgAggTg11B.1.6210.000089
ORF646E46delGAG---11B.1.6270.00202
ORF646E46DgaGgaT11B.60.00091
ORF646E46GgAggGg11C.350.000774
ORF646E46EgaGgaA11C.370.000116
ORF646E46VgAggTg11P.10.000016
ORF646E46GgAggGg11P.10.000016
ORF646E46GgAggGg11Q.10.000126
ORF646E46XGagTag11Q.20.000613