CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF6 : CodonNum = 46

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF6	46	E46V		nonsyn	gAg	gTg	15651	15651	1	27337-27339
ORF6	46	E46del		del	GAG	---	200	200	1	27337-27339
ORF6	46	E46A		nonsyn	gAg	gCg	183	182	0.994536	27337-27339
ORF6	46	E46A		nonsyn	gAG	gCC	183	1	0.00546448	27337-27339
ORF6	46	E46G		nonsyn	gAg	gGg	122	122	1	27337-27339
ORF6	46	E46E		syn	gaG	gaA	104	104	1	27337-27339
ORF6	46	E46D		nonsyn	gaG	gaT	103	100	0.970874	27337-27339
ORF6	46	E46D		nonsyn	gaG	gaC	103	3	0.0291262	27337-27339
ORF6	46	E46X		nonsyn	Gag	Tag	70	60	0.857143	27337-27339
ORF6	46	E46X		nonsyn	GaG	TaA	70	9	0.128571	27337-27339
ORF6	46	E46X		nonsyn	GAG	TGA	70	1	0.0142857	27337-27339
ORF6	46	E46K		nonsyn	Gag	Aag	39	27	0.692308	27337-27339
ORF6	46	E46K		nonsyn	GaG	AaA	39	12	0.307692	27337-27339
ORF6	46	E46L		nonsyn	GAg	CTg	6	6	1	27337-27339
ORF6	46	E46del1		del	gaG	ga-	5	3	0.6	27337-27339
ORF6	46	E46del1		del	GAg	-Tg	5	1	0.2	27337-27339
ORF6	46	E46del1		del	Gag	-ag	5	1	0.2	27337-27339
ORF6	46	E46R		nonsyn	GAG	AGA	4	4	1	27337-27339
ORF6	46	E46Q		nonsyn	Gag	Cag	3	3	1	27337-27339
ORF6	46	E46T		nonsyn	GAG	ACA	3	2	0.666667	27337-27339
ORF6	46	E46Y		nonsyn	GaG	TaT	3	2	0.666667	27337-27339
ORF6	46	E46Y		nonsyn	GaG	TaC	3	1	0.333333	27337-27339
ORF6	46	E46T		nonsyn	GAg	ACg	3	1	0.333333	27337-27339
ORF6	46	E46N		nonsyn	GaG	AaT	2	2	1	27337-27339
ORF6	46	E46del2		del	GAg	--g	1	1	1	27337-27339
ORF6	46	E46M		nonsyn	GAg	ATg	1	1	1	27337-27339

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF6	46	E46V	gAg	gTg	15651	15651	All	0.002993
ORF6	46	E46V	gAg	gTg	14907	14907	AY.118	0.933906
ORF6	46	E46V	gAg	gTg	457	457	B.1.617.2	0.001721
ORF6	46	E46del	GAG	---	200	200	All	0.000038
ORF6	46	E46A	gAg	gCg	182	183	All	0.000035
ORF6	46	E46A	gAG	gCC	1	183	All	0
ORF6	46	E46G	gAg	gGg	122	122	All	0.000023
ORF6	46	E46del	GAG	---	114	114	AY.4	0.000177
ORF6	46	E46E	gaG	gaA	104	104	All	0.00002
ORF6	46	E46D	gaG	gaT	100	103	All	0.000019
ORF6	46	E46D	gaG	gaC	3	103	All	0.000001
ORF6	46	E46X	Gag	Tag	60	70	All	0.000011
ORF6	46	E46X	GaG	TaA	9	70	All	0.000002
ORF6	46	E46X	GAG	TGA	1	70	All	0
ORF6	46	E46A	gAg	gCg	67	67	AY.118	0.004197
ORF6	46	E46E	gaG	gaA	67	67	B.1.177.21	0.005123
ORF6	46	E46V	gAg	gTg	49	49	AY.25	0.000295
ORF6	46	E46G	gAg	gGg	47	47	AY.25	0.000283
ORF6	46	E46A	gAg	gCg	43	43	AY.102	0.00114
ORF6	46	E46K	Gag	Aag	27	39	All	0.000005
ORF6	46	E46K	GaG	AaA	12	39	All	0.000002
ORF6	46	E46V	gAg	gTg	33	33	AY.39	0.000815
ORF6	46	E46V	gAg	gTg	25	25	AY.110	0.002817
ORF6	46	E46V	gAg	gTg	20	20	AY.102	0.00053
ORF6	46	E46A	gAg	gCg	20	20	B.1.1.7	0.000018
ORF6	46	E46G	gAg	gGg	19	19	B.1.1.7	0.000017
ORF6	46	E46D	gaG	gaT	18	18	AY.4	0.000028
ORF6	46	E46K	GaG	AaA	10	16	B.1.177.21	0.000765
ORF6	46	E46K	Gag	Aag	6	16	B.1.177.21	0.000459
ORF6	46	E46V	gAg	gTg	14	14	AY.44	0.000085
ORF6	46	E46V	gAg	gTg	13	13	AY.43	0.000058
ORF6	46	E46V	gAg	gTg	13	13	AY.92	0.003735
ORF6	46	E46D	gaG	gaT	12	12	AY.103	0.000075
ORF6	46	E46A	gAg	gCg	11	12	B.1.617.2	0.000041
ORF6	46	E46A	gAG	gCC	1	12	B.1.617.2	0.000004
ORF6	46	E46V	gAg	gTg	11	11	AY.98	0.000869
ORF6	46	E46del	GAG	---	11	11	B.1.1.7	0.00001
ORF6	46	E46D	gaG	gaT	11	11	B.1.2	0.000097
ORF6	46	E46V	gAg	gTg	10	10	AY.103	0.000062
ORF6	46	E46V	gAg	gTg	10	10	AY.117	0.000845
ORF6	46	E46V	gAg	gTg	10	10	AY.33	0.000668
ORF6	46	E46D	gaG	gaT	9	9	AY.3	0.00009
ORF6	46	E46X	Gag	Tag	7	9	B.1.1.7	0.000006
ORF6	46	E46X	GaG	TaA	2	9	B.1.1.7	0.000002
ORF6	46	E46X	Gag	Tag	8	8	AY.4	0.000012
ORF6	46	E46D	gaG	gaT	8	8	AY.43	0.000035
ORF6	46	E46V	gAg	gTg	8	8	AY.46	0.000833
ORF6	46	E46V	gAg	gTg	8	8	AY.9.2	0.000294
ORF6	46	E46X	GaG	TaA	5	8	B.1.177.21	0.000382
ORF6	46	E46X	Gag	Tag	2	8	B.1.177.21	0.000153
ORF6	46	E46X	GAG	TGA	1	8	B.1.177.21	0.000076
ORF6	46	E46del	GAG	---	8	8	B.1.617.2	0.00003
ORF6	46	E46V	gAg	gTg	7	7	AY.45	0.000852
ORF6	46	E46A	gAg	gCg	7	7	AY.47	0.000218
ORF6	46	E46del	GAG	---	7	7	AY.77	0.007892
ORF6	46	E46X	Gag	Tag	7	7	B.1	0.000064
ORF6	46	E46E	gaG	gaA	7	7	B.1.1.7	0.000006
ORF6	46	E46D	gaG	gaT	7	7	B.1.1.7	0.000006
ORF6	46	E46L	GAg	CTg	6	6	All	0.000001
ORF6	46	E46G	gAg	gGg	6	6	AY.113	0.000854
ORF6	46	E46X	Gag	Tag	6	6	AY.25	0.000036
ORF6	46	E46L	GAg	CTg	6	6	B.1.177.21	0.000459
ORF6	46	E46del1	gaG	ga-	3	5	All	0.000001
ORF6	46	E46del1	GAg	-Tg	1	5	All	0
ORF6	46	E46del1	Gag	-ag	1	5	All	0
ORF6	46	E46K	Gag	Aag	5	5	AY.100	0.00023
ORF6	46	E46G	gAg	gGg	5	5	AY.29	0.000079
ORF6	46	E46del	GAG	---	5	5	AY.39	0.000124
ORF6	46	E46G	gAg	gGg	5	5	B.1	0.000046
ORF6	46	E46V	gAg	gTg	5	5	B.1	0.000046
ORF6	46	E46D	gaG	gaC	2	4		0.111111
ORF6	46	E46D	gaG	gaT	2	4		0.111111
ORF6	46	E46R	GAG	AGA	4	4	All	0.000001
ORF6	46	E46V	gAg	gTg	4	4	AY.116	0.001147
ORF6	46	E46V	gAg	gTg	4	4	AY.119	0.000141
ORF6	46	E46A	gAg	gCg	4	4	AY.43	0.000018
ORF6	46	E46del	GAG	---	4	4	AY.43	0.000018
ORF6	46	E46G	gAg	gGg	4	4	AY.43	0.000018
ORF6	46	E46D	gaG	gaT	4	4	AY.44	0.000024
ORF6	46	E46G	gAg	gGg	4	4	AY.44	0.000024
ORF6	46	E46A	gAg	gCg	4	4	AY.5.3	0.00135
ORF6	46	E46X	Gag	Tag	4	4	AY.98	0.000316
ORF6	46	E46K	Gag	Aag	4	4	B.1.617.2	0.000015
ORF6	46	E46Q	Gag	Cag	3	3	All	0.000001
ORF6	46	E46Y	GaG	TaT	2	3	All	0
ORF6	46	E46T	GAG	ACA	2	3	All	0
ORF6	46	E46Y	GaG	TaC	1	3	All	0
ORF6	46	E46T	GAg	ACg	1	3	All	0
ORF6	46	E46del	GAG	---	3	3	AY.102	0.00008
ORF6	46	E46E	gaG	gaA	3	3	AY.102	0.00008
ORF6	46	E46X	Gag	Tag	3	3	AY.103	0.000019
ORF6	46	E46V	gAg	gTg	3	3	AY.105	0.001929
ORF6	46	E46V	gAg	gTg	3	3	AY.109	0.002219
ORF6	46	E46D	gaG	gaT	3	3	AY.117	0.000254
ORF6	46	E46del	GAG	---	3	3	AY.118	0.000188
ORF6	46	E46E	gaG	gaA	3	3	AY.25	0.000018
ORF6	46	E46D	gaG	gaT	3	3	AY.25	0.000018
ORF6	46	E46V	gAg	gTg	3	3	AY.3	0.00003
ORF6	46	E46X	Gag	Tag	3	3	AY.36	0.000445
ORF6	46	E46del	GAG	---	3	3	AY.42	0.000121
ORF6	46	E46E	gaG	gaA	3	3	AY.43	0.000013
ORF6	46	E46del	GAG	---	3	3	AY.44	0.000018
ORF6	46	E46V	gAg	gTg	3	3	B	0.000383
ORF6	46	E46G	gAg	gGg	3	3	B.1.1.386	0.2
ORF6	46	E46K	Gag	Aag	2	3	B.1.1.7	0.000002
ORF6	46	E46K	GaG	AaA	1	3	B.1.1.7	0.000001
ORF6	46	E46E	gaG	gaA	3	3	B.1.177	0.00004
ORF6	46	E46D	gaG	gaT	3	3	B.1.258.17	0.000312
ORF6	46	E46X	Gag	Tag	3	3	B.1.617.2	0.000011
ORF6	46	E46A	gAg	gCg	3	3	C.37	0.000348
ORF6	46	E46E	gaG	gaA	2	2		0.111111
ORF6	46	E46N	GaG	AaT	2	2		0.111111
ORF6	46	E46X	GaG	TaA	2	2		0.111111
ORF6	46	E46T	GAG	ACA	2	2		0.111111
ORF6	46	E46R	GAG	AGA	2	2		0.111111
ORF6	46	E46N	GaG	AaT	2	2	All	0
ORF6	46	E46del	GAG	---	2	2	AY.103	0.000012
ORF6	46	E46G	gAg	gGg	2	2	AY.103	0.000012
ORF6	46	E46V	gAg	gTg	2	2	AY.104	0.003968
ORF6	46	E46A	gAg	gCg	2	2	AY.117	0.000169
ORF6	46	E46D	gaG	gaT	2	2	AY.119	0.000071
ORF6	46	E46del	GAG	---	2	2	AY.119	0.000071
ORF6	46	E46A	gAg	gCg	2	2	AY.120	0.000074
ORF6	46	E46X	Gag	Tag	2	2	AY.13	0.000322
ORF6	46	E46G	gAg	gGg	2	2	AY.20	0.000078
ORF6	46	E46E	gaG	gaA	2	2	AY.27	0.000129
ORF6	46	E46V	gAg	gTg	2	2	AY.4	0.000003
ORF6	46	E46V	gAg	gTg	2	2	AY.42	0.00008
ORF6	46	E46K	Gag	Aag	2	2	AY.44	0.000012
ORF6	46	E46del	GAG	---	2	2	AY.47	0.000062
ORF6	46	E46V	gAg	gTg	2	2	AY.47	0.000062
ORF6	46	E46D	gaG	gaT	2	2	AY.5	0.000041
ORF6	46	E46A	gAg	gCg	2	2	AY.5.4	0.000553
ORF6	46	E46V	gAg	gTg	2	2	AY.54	0.000191
ORF6	46	E46X	Gag	Tag	2	2	AY.6	0.000082
ORF6	46	E46D	gaG	gaT	2	2	AY.70	0.000417
ORF6	46	E46V	gAg	gTg	2	2	AY.75	0.000112
ORF6	46	E46V	gAg	gTg	2	2	AY.95	0.001522
ORF6	46	E46A	gAg	gCg	2	2	AY.98	0.000158
ORF6	46	E46D	gaG	gaT	2	2	B.1.1.519	0.000079
ORF6	46	E46Q	Gag	Cag	2	2	B.1.1.7	0.000002
ORF6	46	E46X	Gag	Tag	2	2	B.1.160	0.000062
ORF6	46	E46A	gAg	gCg	2	2	B.1.177	0.000026
ORF6	46	E46G	gAg	gGg	2	2	B.1.177	0.000026
ORF6	46	E46del	GAG	---	2	2	B.1.177.21	0.000153
ORF6	46	E46del1	gaG	ga-	1	2	B.1.177.21	0.000076
ORF6	46	E46del1	GAg	-Tg	1	2	B.1.177.21	0.000076
ORF6	46	E46A	gAg	gCg	2	2	B.1.177.62	0.002384
ORF6	46	E46del	GAG	---	2	2	B.1.2	0.000018
ORF6	46	E46del	GAG	---	2	2	B.1.351	0.000059
ORF6	46	E46del	GAG	---	2	2	B.1.525	0.000226
ORF6	46	E46K	Gag	Aag	2	2	B.1.526	0.000047
ORF6	46	E46G	gAg	gGg	2	2	B.1.617.2	0.000008
ORF6	46	E46del1	gaG	ga-	2	2	B.1.617.2	0.000008
ORF6	46	E46X	Gag	Tag	2	2	D.2	0.00015
ORF6	46	E46del	GAG	---	2	2	P.1	0.000032
ORF6	46	E46V	gAg	gTg	2	2	P.1.15	0.000465
ORF6	46	E46M	GAg	ATg	1	1	All	0
ORF6	46	E46del2	GAg	--g	1	1	All	0
ORF6	46	E46del	GAG	---	1	1	AY.100	0.000046
ORF6	46	E46E	gaG	gaA	1	1	AY.103	0.000006
ORF6	46	E46del	GAG	---	1	1	AY.106	0.000335
ORF6	46	E46D	gaG	gaT	1	1	AY.111	0.000183
ORF6	46	E46V	gAg	gTg	1	1	AY.113	0.000142
ORF6	46	E46A	gAg	gCg	1	1	AY.113	0.000142
ORF6	46	E46del	GAG	---	1	1	AY.113	0.000142
ORF6	46	E46V	gAg	gTg	1	1	AY.114	0.000231
ORF6	46	E46G	gAg	gGg	1	1	AY.114	0.000231
ORF6	46	E46del	GAG	---	1	1	AY.117	0.000085
ORF6	46	E46T	GAg	ACg	1	1	AY.119	0.000035
ORF6	46	E46D	gaG	gaT	1	1	AY.120	0.000037
ORF6	46	E46G	gAg	gGg	1	1	AY.121	0.000135
ORF6	46	E46G	gAg	gGg	1	1	AY.19	0.00114
ORF6	46	E46del	GAG	---	1	1	AY.20	0.000039
ORF6	46	E46A	gAg	gCg	1	1	AY.23	0.00007
ORF6	46	E46E	gaG	gaA	1	1	AY.23	0.00007
ORF6	46	E46A	gAg	gCg	1	1	AY.25	0.000006
ORF6	46	E46G	gAg	gGg	1	1	AY.26	0.000028
ORF6	46	E46del	GAG	---	1	1	AY.27	0.000065
ORF6	46	E46V	gAg	gTg	1	1	AY.29	0.000016
ORF6	46	E46del	GAG	---	1	1	AY.29	0.000016
ORF6	46	E46E	gaG	gaA	1	1	AY.3	0.00001
ORF6	46	E46del	GAG	---	1	1	AY.3	0.00001
ORF6	46	E46G	gAg	gGg	1	1	AY.3	0.00001
ORF6	46	E46K	Gag	Aag	1	1	AY.3	0.00001
ORF6	46	E46X	Gag	Tag	1	1	AY.3	0.00001
ORF6	46	E46G	gAg	gGg	1	1	AY.36	0.000148
ORF6	46	E46A	gAg	gCg	1	1	AY.39	0.000025
ORF6	46	E46Y	GaG	TaC	1	1	AY.39	0.000025
ORF6	46	E46K	Gag	Aag	1	1	AY.39.1	0.00004
ORF6	46	E46A	gAg	gCg	1	1	AY.4	0.000002
ORF6	46	E46E	gaG	gaA	1	1	AY.4	0.000002
ORF6	46	E46G	gAg	gGg	1	1	AY.4	0.000002
ORF6	46	E46del	GAG	---	1	1	AY.4.2	0.000022
ORF6	46	E46V	gAg	gTg	1	1	AY.4.5	0.000107
ORF6	46	E46Q	Gag	Cag	1	1	AY.43	0.000004
ORF6	46	E46X	Gag	Tag	1	1	AY.43	0.000004
ORF6	46	E46del2	GAg	--g	1	1	AY.44	0.000006
ORF6	46	E46del	GAG	---	1	1	AY.45	0.000122
ORF6	46	E46X	Gag	Tag	1	1	AY.45	0.000122
ORF6	46	E46A	gAg	gCg	1	1	AY.46	0.000104
ORF6	46	E46V	gAg	gTg	1	1	AY.46.3	0.000934
ORF6	46	E46V	gAg	gTg	1	1	AY.46.4	0.000165
ORF6	46	E46D	gaG	gaT	1	1	AY.46.6	0.000072
ORF6	46	E46X	Gag	Tag	1	1	AY.46.6	0.000072
ORF6	46	E46G	gAg	gGg	1	1	AY.47	0.000031
ORF6	46	E46V	gAg	gTg	1	1	AY.53	0.000288
ORF6	46	E46V	gAg	gTg	1	1	AY.61	0.000105
ORF6	46	E46V	gAg	gTg	1	1	AY.68	0.000274
ORF6	46	E46del	GAG	---	1	1	AY.73	0.000665
ORF6	46	E46G	gAg	gGg	1	1	AY.75	0.000056
ORF6	46	E46V	gAg	gTg	1	1	AY.82	0.001357
ORF6	46	E46del	GAG	---	1	1	AY.84	0.000437
ORF6	46	E46del	GAG	---	1	1	AY.98	0.000079
ORF6	46	E46del	GAG	---	1	1	AY.99	0.001049
ORF6	46	E46A	gAg	gCg	1	1	AZ.3	0.00152
ORF6	46	E46D	gaG	gaC	1	1	B.1	0.000009
ORF6	46	E46E	gaG	gaA	1	1	B.1	0.000009
ORF6	46	E46del	GAG	---	1	1	B.1	0.000009
ORF6	46	E46K	Gag	Aag	1	1	B.1	0.000009
ORF6	46	E46R	GAG	AGA	1	1	B.1	0.000009
ORF6	46	E46K	GaG	AaA	1	1	B.1.1	0.000018
ORF6	46	E46G	gAg	gGg	1	1	B.1.1	0.000018
ORF6	46	E46A	gAg	gCg	1	1	B.1.1	0.000018
ORF6	46	E46E	gaG	gaA	1	1	B.1.1.161	0.003534
ORF6	46	E46X	Gag	Tag	1	1	B.1.1.189	0.001513
ORF6	46	E46E	gaG	gaA	1	1	B.1.1.196	0.005714
ORF6	46	E46G	gAg	gGg	1	1	B.1.1.214	0.000055
ORF6	46	E46A	gAg	gCg	1	1	B.1.1.216	0.00089
ORF6	46	E46G	gAg	gGg	1	1	B.1.1.306	0.000438
ORF6	46	E46X	Gag	Tag	1	1	B.1.1.409	0.002833
ORF6	46	E46Y	GaG	TaT	1	1	B.1.1.409	0.002833
ORF6	46	E46D	gaG	gaT	1	1	B.1.1.409	0.002833
ORF6	46	E46E	gaG	gaA	1	1	B.1.1.434	0.000349
ORF6	46	E46E	gaG	gaA	1	1	B.1.1.519	0.00004
ORF6	46	E46G	gAg	gGg	1	1	B.1.1.525	0.005464
ORF6	46	E46del1	Gag	-ag	1	1	B.1.1.7	0.000001
ORF6	46	E46Y	GaG	TaT	1	1	B.1.1.7	0.000001
ORF6	46	E46del	GAG	---	1	1	B.1.147	0.000756
ORF6	46	E46D	gaG	gaT	1	1	B.1.160	0.000031
ORF6	46	E46X	Gag	Tag	1	1	B.1.177	0.000013
ORF6	46	E46M	GAg	ATg	1	1	B.1.177.21	0.000076
ORF6	46	E46R	GAG	AGA	1	1	B.1.177.21	0.000076
ORF6	46	E46D	gaG	gaT	1	1	B.1.177.36	0.016129
ORF6	46	E46D	gaG	gaT	1	1	B.1.177.86	0.000183
ORF6	46	E46V	gAg	gTg	1	1	B.1.2	0.000009
ORF6	46	E46E	gaG	gaA	1	1	B.1.2	0.000009
ORF6	46	E46G	gAg	gGg	1	1	B.1.2	0.000009
ORF6	46	E46K	Gag	Aag	1	1	B.1.2	0.000009
ORF6	46	E46X	Gag	Tag	1	1	B.1.2	0.000009
ORF6	46	E46A	gAg	gCg	1	1	B.1.239	0.001221
ORF6	46	E46G	gAg	gGg	1	1	B.1.243	0.00007
ORF6	46	E46del	GAG	---	1	1	B.1.243	0.00007
ORF6	46	E46D	gaG	gaT	1	1	B.1.258	0.000067
ORF6	46	E46K	Gag	Aag	1	1	B.1.258	0.000067
ORF6	46	E46D	gaG	gaT	1	1	B.1.260	0.003344
ORF6	46	E46V	gAg	gTg	1	1	B.1.335	0.010309
ORF6	46	E46E	gaG	gaA	1	1	B.1.36	0.000146
ORF6	46	E46K	Gag	Aag	1	1	B.1.396	0.000706
ORF6	46	E46del	GAG	---	1	1	B.1.404	0.001302
ORF6	46	E46G	gAg	gGg	1	1	B.1.429	0.000024
ORF6	46	E46D	gaG	gaT	1	1	B.1.453	0.003236
ORF6	46	E46del	GAG	---	1	1	B.1.526	0.000024
ORF6	46	E46D	gaG	gaT	1	1	B.1.526	0.000024
ORF6	46	E46E	gaG	gaA	1	1	B.1.551	0.00129
ORF6	46	E46del	GAG	---	1	1	B.1.564	0.000426
ORF6	46	E46V	gAg	gTg	1	1	B.1.596	0.000087
ORF6	46	E46G	gAg	gGg	1	1	B.1.596	0.000087
ORF6	46	E46G	gAg	gGg	1	1	B.1.609	0.000479
ORF6	46	E46del	GAG	---	1	1	B.1.617.1	0.000129
ORF6	46	E46E	gaG	gaA	1	1	B.1.617.2	0.000004
ORF6	46	E46del	GAG	---	1	1	B.1.617.3	0.002985
ORF6	46	E46A	gAg	gCg	1	1	B.1.621	0.000089
ORF6	46	E46V	gAg	gTg	1	1	B.1.621	0.000089
ORF6	46	E46del	GAG	---	1	1	B.1.627	0.00202
ORF6	46	E46D	gaG	gaT	1	1	B.6	0.00091
ORF6	46	E46G	gAg	gGg	1	1	C.35	0.000774
ORF6	46	E46E	gaG	gaA	1	1	C.37	0.000116
ORF6	46	E46V	gAg	gTg	1	1	P.1	0.000016
ORF6	46	E46G	gAg	gGg	1	1	P.1	0.000016
ORF6	46	E46G	gAg	gGg	1	1	Q.1	0.000126
ORF6	46	E46X	Gag	Tag	1	1	Q.2	0.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.