CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 4 | L4L | syn | ctC | ctT | 20817 | 20659 | 0.99241 | 27211-27213 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 4 | L4L | ctC | ctT | 20659 | 20817 | All | 0.003951 |
ORF6 | 4 | L4L | ctC | ctT | 10988 | 10988 | R.1 | 0.989019 |
ORF6 | 4 | L4L | ctC | ctT | 4441 | 4503 | B.1.1.7 | 0.003976 |
ORF6 | 4 | L4L | ctC | ctT | 667 | 667 | B.1.1.70 | 0.22749 |
ORF6 | 4 | L4L | ctC | ctT | 486 | 487 | B.1 | 0.004452 |
ORF6 | 4 | L4L | ctC | ctT | 416 | 419 | B.1.1 | 0.007547 |
ORF6 | 4 | L4L | ctC | ctT | 198 | 203 | B.1.177 | 0.002607 |
ORF6 | 4 | L4L | ctC | ctT | 182 | 182 | B.1.177.75 | 0.189386 |
ORF6 | 4 | L4L | ctC | ctT | 154 | 154 | B.1.258 | 0.010248 |
ORF6 | 4 | L4L | ctC | ctT | 119 | 119 | B.1.619.1 | 0.076331 |
ORF6 | 4 | L4L | ctC | ctT | 100 | 119 | P.1 | 0.001575 |
ORF6 | 4 | L4L | ctC | ctT | 108 | 108 | B.1.1.263 | 0.168224 |
ORF6 | 4 | L4L | ctC | ctT | 103 | 105 | AY.4 | 0.00016 |
ORF6 | 4 | L4L | ctC | ctT | 101 | 101 | B.1.1.220 | 0.187732 |
ORF6 | 4 | L4L | ctC | ctT | 88 | 89 | B.1.2 | 0.000775 |
ORF6 | 4 | L4L | ctC | ctT | 83 | 83 | B.1.526 | 0.001951 |
ORF6 | 4 | L4L | ctC | ctT | 79 | 79 | B.1.1.222 | 0.016116 |
ORF6 | 4 | L4L | ctC | ctT | 79 | 79 | B.1.429 | 0.001859 |
ORF6 | 4 | L4L | ctC | ctT | 46 | 73 | AY.47 | 0.001431 |
ORF6 | 4 | L4L | ctC | ctT | 66 | 67 | B.1.160 | 0.002058 |
ORF6 | 4 | L4L | ctC | ctT | 61 | 64 | B.1.617.2 | 0.00023 |
ORF6 | 4 | L4L | ctC | ctT | 53 | 53 | B.1.1.311 | 0.018983 |
ORF6 | 4 | L4L | ctC | ctT | 49 | 49 | B.1.1.519 | 0.001946 |
ORF6 | 4 | L4L | ctC | ctT | 49 | 49 | B.1.36.18 | 0.020588 |
ORF6 | 4 | L4L | ctC | ctT | 45 | 45 | AU.2 | 0.108959 |
ORF6 | 4 | L4L | ctC | ctT | 45 | 45 | B.1.621 | 0.003983 |
ORF6 | 4 | L4L | ctC | ctT | 44 | 44 | B.1.177.54 | 0.026683 |
ORF6 | 4 | L4L | ctC | ctT | 44 | 44 | B.1.241 | 0.035714 |
ORF6 | 4 | L4L | ctC | ctT | 40 | 43 | AY.44 | 0.000243 |
ORF6 | 4 | L4L | ctC | ctT | 42 | 42 | B.1.221 | 0.002983 |
ORF6 | 4 | L4L | ctC | ctT | 42 | 42 | P.1.14 | 0.002008 |
ORF6 | 4 | L4L | ctC | ctT | 39 | 40 | AY.29 | 0.000615 |
ORF6 | 4 | L4L | ctC | ctT | 39 | 39 | B.1.243 | 0.002714 |
ORF6 | 4 | L4L | ctC | ctT | 38 | 38 | AY.26 | 0.001076 |
ORF6 | 4 | L4L | ctC | ctT | 37 | 37 | B.1.409 | 0.028906 |
ORF6 | 4 | L4L | ctC | ctT | 35 | 36 | AY.103 | 0.000217 |
ORF6 | 4 | L4L | ctC | ctT | 36 | 36 | AY.14 | 0.003168 |
ORF6 | 4 | L4L | ctC | ctT | 36 | 36 | B.1.525 | 0.004074 |
ORF6 | 4 | L4L | ctC | ctT | 35 | 35 | B.1.1.525 | 0.191257 |
ORF6 | 4 | L4L | ctC | ctT | 35 | 35 | B.1.177.81 | 0.006626 |
ORF6 | 4 | L4L | ctC | ctT | 32 | 32 | B.1.427 | 0.001616 |
ORF6 | 4 | L4L | ctC | ctT | 32 | 32 | C.16 | 0.033934 |
ORF6 | 4 | L4L | ctC | ctT | 30 | 30 | AY.4.2 | 0.000651 |
ORF6 | 4 | L4L | ctC | ctT | 30 | 30 | B.1.177.19 | 0.042918 |
ORF6 | 4 | L4L | ctC | ctT | 30 | 30 | B.1.177.44 | 0.015568 |
ORF6 | 4 | L4L | ctC | ctT | 27 | 28 | P.1.7 | 0.008621 |
ORF6 | 4 | L4L | ctC | ctT | 26 | 26 | B.1.234 | 0.003431 |
ORF6 | 4 | L4L | ctC | ctT | 22 | 25 | AY.43 | 0.000097 |
ORF6 | 4 | L4L | ctC | ctT | 24 | 24 | B.1.1.434 | 0.008365 |
ORF6 | 4 | L4L | ctC | ctT | 23 | 23 | B.1.1.317 | 0.009469 |
ORF6 | 4 | L4L | ctC | ctT | 22 | 22 | C.37 | 0.002553 |
ORF6 | 4 | L4L | ctC | ctT | 19 | 19 | B.1.160.28 | 0.055556 |
ORF6 | 4 | L4L | ctC | ctT | 15 | 17 | AY.75 | 0.00084 |
ORF6 | 4 | L4L | ctC | ctT | 17 | 17 | B.1.1.174 | 0.057432 |
ORF6 | 4 | L4L | ctC | ctT | 17 | 17 | B.1.351 | 0.000505 |
ORF6 | 4 | L4L | ctC | ctT | 17 | 17 | B.1.428 | 0.017347 |
ORF6 | 4 | L4L | ctC | ctT | 16 | 16 | B.1.1.28 | 0.00498 |
ORF6 | 4 | L4L | ctC | ctT | 16 | 16 | B.1.1.39 | 0.008155 |
ORF6 | 4 | L4L | ctC | ctT | 16 | 16 | B.1.416 | 0.020305 |
ORF6 | 4 | L4L | ctC | ctT | 15 | 15 | B.1.1.330 | 0.9375 |
ORF6 | 4 | L4L | ctC | ctT | 14 | 14 | AY.39 | 0.000346 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | AY.119 | 0.000459 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | B.1.1.306 | 0.005699 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | B.1.1.348 | 0.01035 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | B.1.177.32 | 0.017544 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | B.1.240 | 0.002802 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | AY.25 | 0.000072 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | B.1.1.10 | 0.013378 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | B.1.177.73 | 0.006795 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | B.1.575 | 0.003641 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | B.1.595 | 0.003132 |
ORF6 | 4 | L4L | ctC | ctT | 11 | 11 | B.1.1.284 | 0.001181 |
ORF6 | 4 | L4L | ctC | ctT | 10 | 11 | D.2 | 0.00075 |
ORF6 | 4 | L4L | ctC | ctT | 10 | 10 | AY.9.2 | 0.000367 |
ORF6 | 4 | L4L | ctC | ctT | 10 | 10 | B.1.177.60 | 0.002184 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 10 | B.1.466.2 | 0.003521 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | AY.16.1 | 0.004229 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | AY.20 | 0.00035 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 9 | AY.3 | 0.00008 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | AY.38 | 0.004493 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 9 | B.1.1.1 | 0.002287 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | B.1.596 | 0.000784 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | B.1.609 | 0.004314 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | C.13 | 0.230769 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | AY.54 | 0.000763 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.1.189 | 0.012103 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.1.214 | 0.000444 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.1.216 | 0.007124 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.1.291 | 0.005939 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.524 | 0.011252 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.637 | 0.000585 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.78 | 0.068376 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | AY.98.1 | 0.000339 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 7 | B | 0.000767 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | B.1.232 | 0.003761 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | B.1.349 | 0.005004 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | B.1.36 | 0.001021 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | B.1.362 | 0.010786 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | AY.8 | 0.003636 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | AY.80 | 0.006772 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.1.33 | 0.002525 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.1.54 | 0.018127 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.104 | 0.02214 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.147 | 0.004535 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.620 | 0.005676 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | P.1.15 | 0.001394 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | AY.100 | 0.00023 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | AY.120 | 0.000186 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | AZ.2 | 0.004105 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.1.1.101 | 0.05 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.1.237 | 0.024876 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.1.538 | 0.040323 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 5 | B.1.617.1 | 0.000516 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.6 | 0.00455 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.6.6 | 0.004444 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | N.5 | 0.008834 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | Q.8 | 0.000825 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.102 | 0.000106 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.13 | 0.000644 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.16 | 0.001519 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.5 | 0.000083 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.5.4 | 0.001107 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.60 | 0.003752 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.61 | 0.000419 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.316 | 0.0037 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.448 | 0.00813 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.485 | 0.066667 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.523 | 0.00625 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.177.6 | 0.003906 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.258.20 | 0.063492 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.36.1 | 0.004561 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.36.8 | 0.004 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.628 | 0.001409 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | P.2 | 0.000747 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 3 | A | 0.000774 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | A.27 | 0.004967 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.113 | 0.000427 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.39.1 | 0.000119 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.4.5 | 0.000322 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.42 | 0.000121 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.52 | 0.002443 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 3 | AY.6 | 0.000082 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.65 | 0.001599 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.68 | 0.000821 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.9.1 | 0.000251 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.176 | 0.001318 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.277 | 0.002276 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.354 | 0.013158 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.44 | 0.007229 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.464 | 0.004418 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.514 | 0.115385 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.521 | 0.016043 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.84 | 0.272727 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.89 | 0.018182 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.139 | 0.002199 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.258.24 | 0.032258 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.298 | 0.006342 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 3 | B.1.36.36 | 0.001204 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.582 | 0.001472 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 3 | P.1.12 | 0.000484 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 3 | P.1.17 | 0.000324 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | Q.1 | 0.000379 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | A.1 | 0.000564 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | A.23.1 | 0.001408 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | A.29 | 0.010638 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | A.5 | 0.003846 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AD.2 | 0.000438 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.110 | 0.000225 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.24 | 0.000862 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.27 | 0.000129 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.30 | 0.000791 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.33 | 0.000134 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.40 | 0.001929 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.53 | 0.000575 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 2 | AY.99 | 0.001049 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.328 | 0.033898 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.374 | 0.004751 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.376 | 0.011905 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.51 | 0.003436 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.56 | 0.035714 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.83 | 0.00542 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.111 | 0.00235 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.146 | 0.008475 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.177.17 | 0.001642 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 2 | B.1.177.21 | 0.000076 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.177.42 | 0.001789 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.195 | 0.01005 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.210 | 0.004264 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.222 | 0.003384 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.231 | 0.064516 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.260 | 0.006689 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.293 | 0.025 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.36.10 | 0.009569 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.369 | 0.00057 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.404 | 0.002604 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.411 | 0.007407 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.456 | 0.006536 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.499 | 0.002101 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.503 | 0.004975 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.509 | 0.001732 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.568 | 0.002222 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.45 | 0.007663 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | C.1 | 0.004785 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | C.14 | 0.008658 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | C.30 | 0.003454 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | A.6 | 0.005128 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AA.7 | 0.009174 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AU.1 | 0.001266 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AW.1 | 0.003049 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.111 | 0.000183 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.116 | 0.000287 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.116.1 | 0.000311 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.118 | 0.000063 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.12 | 0.000316 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.23 | 0.00007 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.29.1 | 0.000221 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.3.1 | 0.000085 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.34 | 0.000097 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.34.1 | 0.00051 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.37 | 0.000316 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.4.1 | 0.000737 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.46.4 | 0.000165 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.46.6 | 0.000072 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.49 | 0.003195 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.5.3 | 0.000337 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.62 | 0.000436 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.63 | 0.000387 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.66 | 0.00107 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.67 | 0.000464 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.69 | 0.000187 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.72 | 0.001361 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.73 | 0.000665 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.75.1 | 0.00018 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.9 | 0.000068 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.93 | 0.000273 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AZ.3 | 0.00152 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AZ.5 | 0.003509 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.115 | 0.008929 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.193 | 0.111111 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.196 | 0.005714 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.224 | 0.014286 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.355 | 0.015385 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.356 | 0.008547 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.370 | 0.012658 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.48 | 0.002874 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.522 | 0.017241 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.62 | 0.027027 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.161 | 0.017241 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.3 | 0.007634 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.67 | 0.007634 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.179 | 0.003759 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.227 | 0.047619 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.258.21 | 0.007752 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.264 | 0.012346 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.265 | 0.001271 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.279 | 0.000514 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.284 | 0.013158 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.346 | 0.001311 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.356 | 0.001727 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.36.7 | 0.004 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.361 | 0.001289 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.375 | 0.00082 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.389 | 0.001002 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.39 | 0.003906 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.397 | 0.004854 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.408 | 0.00369 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.437 | 0.020833 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.438 | 0.006536 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.453 | 0.003236 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.468 | 0.005714 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.489 | 0.043478 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.521 | 0.004975 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.541 | 0.004425 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.551 | 0.00129 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.564 | 0.000426 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.577 | 0.000687 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.588 | 0.00091 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.599 | 0.00365 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.611 | 0.04 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.612 | 0.002653 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.619 | 0.000871 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.623 | 0.000536 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.627 | 0.00202 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.634 | 0.003425 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.8 | 0.001972 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.94 | 0.027027 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.29 | 0.003509 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.3 | 0.000831 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.3.1 | 0.001658 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.4 | 0.002208 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | C.35 | 0.000774 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | C.36.3 | 0.000567 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | C.39 | 0.018868 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | K.1 | 0.02381 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | N.4 | 0.004255 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | P.1.10 | 0.000269 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | P.1.17.1 | 0.000875 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | Q.4 | 0.000455 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | W.4 | 0.001351 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | Y.1 | 0.012821 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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