CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 4 | L4L | syn | ctC | ctT | 20817 | 20659 | 0.99241 | 27211-27213 | |
ORF6 | 4 | L4L | syn | ctC | ctA | 20817 | 128 | 0.00614882 | 27211-27213 | |
ORF6 | 4 | L4L | syn | ctC | ctG | 20817 | 29 | 0.00139309 | 27211-27213 | |
ORF6 | 4 | L4L | syn | CtC | TtA | 20817 | 1 | 0.0000480377 | 27211-27213 | |
ORF6 | 4 | L4P | nonsyn | cTc | cCc | 786 | 782 | 0.994911 | 27211-27213 | |
ORF6 | 4 | L4P | nonsyn | cTC | cCT | 786 | 3 | 0.00381679 | 27211-27213 | |
ORF6 | 4 | L4P | nonsyn | cTC | cCA | 786 | 1 | 0.00127226 | 27211-27213 | |
ORF6 | 4 | L4del | del | CTC | --- | 449 | 449 | 1 | 27211-27213 | |
ORF6 | 4 | L4H | nonsyn | cTc | cAc | 235 | 234 | 0.995745 | 27211-27213 | |
ORF6 | 4 | L4H | nonsyn | cTC | cAT | 235 | 1 | 0.00425532 | 27211-27213 | |
ORF6 | 4 | L4F | nonsyn | Ctc | Ttc | 230 | 228 | 0.991304 | 27211-27213 | |
ORF6 | 4 | L4F | nonsyn | CtC | TtT | 230 | 2 | 0.00869565 | 27211-27213 | |
ORF6 | 4 | L4I | nonsyn | Ctc | Atc | 79 | 74 | 0.936709 | 27211-27213 | |
ORF6 | 4 | L4I | nonsyn | CtC | AtA | 79 | 4 | 0.0506329 | 27211-27213 | |
ORF6 | 4 | L4I | nonsyn | CtC | AtT | 79 | 1 | 0.0126582 | 27211-27213 | |
ORF6 | 4 | L4R | nonsyn | cTc | cGc | 31 | 30 | 0.967742 | 27211-27213 | |
ORF6 | 4 | L4R | nonsyn | cTC | cGA | 31 | 1 | 0.0322581 | 27211-27213 | |
ORF6 | 4 | L4V | nonsyn | Ctc | Gtc | 11 | 7 | 0.636364 | 27211-27213 | |
ORF6 | 4 | L4V | nonsyn | CtC | GtA | 11 | 3 | 0.272727 | 27211-27213 | |
ORF6 | 4 | L4V | nonsyn | CtC | GtT | 11 | 1 | 0.0909091 | 27211-27213 | |
ORF6 | 4 | L4del1 | del | ctC | ct- | 10 | 4 | 0.4 | 27211-27213 | |
ORF6 | 4 | L4del1 | del | Ctc | -tc | 10 | 3 | 0.3 | 27211-27213 | |
ORF6 | 4 | L4del1 | del | CtC | -tT | 10 | 1 | 0.1 | 27211-27213 | |
ORF6 | 4 | L4del1 | del | cTc | c-c | 10 | 1 | 0.1 | 27211-27213 | |
ORF6 | 4 | L4del1 | del | CtC | At- | 10 | 1 | 0.1 | 27211-27213 | |
ORF6 | 4 | L4N | nonsyn | CTc | AAc | 3 | 3 | 1 | 27211-27213 | |
ORF6 | 4 | L4S | nonsyn | CTc | TCc | 3 | 1 | 0.333333 | 27211-27213 | |
ORF6 | 4 | L4S | nonsyn | CTC | TCT | 3 | 1 | 0.333333 | 27211-27213 | |
ORF6 | 4 | L4S | nonsyn | CTC | TCA | 3 | 1 | 0.333333 | 27211-27213 | |
ORF6 | 4 | L4Q | nonsyn | cTC | cAA | 2 | 2 | 1 | 27211-27213 | |
ORF6 | 4 | L4K | nonsyn | CTC | AAA | 2 | 2 | 1 | 27211-27213 | |
ORF6 | 4 | L4T | nonsyn | CTC | ACT | 2 | 1 | 0.5 | 27211-27213 | |
ORF6 | 4 | L4T | nonsyn | CTC | ACA | 2 | 1 | 0.5 | 27211-27213 | |
ORF6 | 4 | L4M | nonsyn | CtC | AtG | 1 | 1 | 1 | 27211-27213 | |
ORF6 | 4 | L4del2 | del | cTC | c-- | 1 | 1 | 1 | 27211-27213 | |
ORF6 | 4 | L4C | nonsyn | CTC | TGT | 1 | 1 | 1 | 27211-27213 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 4 | L4L | ctC | ctT | 20659 | 20817 | All | 0.003951 |
ORF6 | 4 | L4L | ctC | ctA | 128 | 20817 | All | 0.000024 |
ORF6 | 4 | L4L | ctC | ctG | 29 | 20817 | All | 0.000006 |
ORF6 | 4 | L4L | CtC | TtA | 1 | 20817 | All | 0 |
ORF6 | 4 | L4L | ctC | ctT | 10988 | 10988 | R.1 | 0.989019 |
ORF6 | 4 | L4L | ctC | ctT | 4441 | 4503 | B.1.1.7 | 0.003976 |
ORF6 | 4 | L4L | ctC | ctA | 50 | 4503 | B.1.1.7 | 0.000045 |
ORF6 | 4 | L4L | ctC | ctG | 11 | 4503 | B.1.1.7 | 0.00001 |
ORF6 | 4 | L4L | CtC | TtA | 1 | 4503 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4P | cTc | cCc | 782 | 786 | All | 0.00015 |
ORF6 | 4 | L4P | cTC | cCT | 3 | 786 | All | 0.000001 |
ORF6 | 4 | L4P | cTC | cCA | 1 | 786 | All | 0 |
ORF6 | 4 | L4L | ctC | ctT | 667 | 667 | B.1.1.70 | 0.22749 |
ORF6 | 4 | L4P | cTc | cCc | 521 | 521 | B.1 | 0.004772 |
ORF6 | 4 | L4L | ctC | ctT | 486 | 487 | B.1 | 0.004452 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 487 | B.1 | 0.000009 |
ORF6 | 4 | L4del | CTC | --- | 449 | 449 | All | 0.000086 |
ORF6 | 4 | L4L | ctC | ctT | 416 | 419 | B.1.1 | 0.007547 |
ORF6 | 4 | L4L | ctC | ctA | 2 | 419 | B.1.1 | 0.000036 |
ORF6 | 4 | L4L | ctC | ctG | 1 | 419 | B.1.1 | 0.000018 |
ORF6 | 4 | L4H | cTc | cAc | 234 | 235 | All | 0.000045 |
ORF6 | 4 | L4H | cTC | cAT | 1 | 235 | All | 0 |
ORF6 | 4 | L4F | Ctc | Ttc | 228 | 230 | All | 0.000044 |
ORF6 | 4 | L4F | CtC | TtT | 2 | 230 | All | 0 |
ORF6 | 4 | L4L | ctC | ctT | 198 | 203 | B.1.177 | 0.002607 |
ORF6 | 4 | L4L | ctC | ctA | 3 | 203 | B.1.177 | 0.00004 |
ORF6 | 4 | L4L | ctC | ctG | 2 | 203 | B.1.177 | 0.000026 |
ORF6 | 4 | L4L | ctC | ctT | 182 | 182 | B.1.177.75 | 0.189386 |
ORF6 | 4 | L4L | ctC | ctT | 154 | 154 | B.1.258 | 0.010248 |
ORF6 | 4 | L4del | CTC | --- | 152 | 152 | B.1.177.21 | 0.011623 |
ORF6 | 4 | L4H | cTc | cAc | 139 | 139 | B.1.617.2 | 0.000523 |
ORF6 | 4 | L4L | ctC | ctT | 119 | 119 | B.1.619.1 | 0.076331 |
ORF6 | 4 | L4L | ctC | ctT | 100 | 119 | P.1 | 0.001575 |
ORF6 | 4 | L4L | ctC | ctA | 19 | 119 | P.1 | 0.000299 |
ORF6 | 4 | L4L | ctC | ctT | 108 | 108 | B.1.1.263 | 0.168224 |
ORF6 | 4 | L4L | ctC | ctT | 103 | 105 | AY.4 | 0.00016 |
ORF6 | 4 | L4L | ctC | ctA | 2 | 105 | AY.4 | 0.000003 |
ORF6 | 4 | L4P | cTc | cCc | 100 | 102 | B.1.1.7 | 0.00009 |
ORF6 | 4 | L4P | cTC | cCT | 2 | 102 | B.1.1.7 | 0.000002 |
ORF6 | 4 | L4L | ctC | ctT | 101 | 101 | B.1.1.220 | 0.187732 |
ORF6 | 4 | L4L | ctC | ctT | 88 | 89 | B.1.2 | 0.000775 |
ORF6 | 4 | L4L | ctC | ctG | 1 | 89 | B.1.2 | 0.000009 |
ORF6 | 4 | L4L | ctC | ctT | 83 | 83 | B.1.526 | 0.001951 |
ORF6 | 4 | L4I | Ctc | Atc | 74 | 79 | All | 0.000014 |
ORF6 | 4 | L4I | CtC | AtA | 4 | 79 | All | 0.000001 |
ORF6 | 4 | L4I | CtC | AtT | 1 | 79 | All | 0 |
ORF6 | 4 | L4L | ctC | ctT | 79 | 79 | B.1.1.222 | 0.016116 |
ORF6 | 4 | L4L | ctC | ctT | 79 | 79 | B.1.429 | 0.001859 |
ORF6 | 4 | L4L | ctC | ctT | 46 | 73 | AY.47 | 0.001431 |
ORF6 | 4 | L4L | ctC | ctA | 27 | 73 | AY.47 | 0.00084 |
ORF6 | 4 | L4F | Ctc | Ttc | 68 | 68 | N.3 | 0.395349 |
ORF6 | 4 | L4L | ctC | ctT | 66 | 67 | B.1.160 | 0.002058 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 67 | B.1.160 | 0.000031 |
ORF6 | 4 | L4L | ctC | ctT | 61 | 64 | B.1.617.2 | 0.00023 |
ORF6 | 4 | L4L | ctC | ctG | 2 | 64 | B.1.617.2 | 0.000008 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 64 | B.1.617.2 | 0.000004 |
ORF6 | 4 | L4H | cTc | cAc | 60 | 60 | AY.98 | 0.00474 |
ORF6 | 4 | L4L | ctC | ctT | 53 | 53 | B.1.1.311 | 0.018983 |
ORF6 | 4 | L4L | ctC | ctT | 49 | 49 | B.1.1.519 | 0.001946 |
ORF6 | 4 | L4L | ctC | ctT | 49 | 49 | B.1.36.18 | 0.020588 |
ORF6 | 4 | L4L | ctC | ctT | 45 | 45 | AU.2 | 0.108959 |
ORF6 | 4 | L4L | ctC | ctT | 45 | 45 | B.1.621 | 0.003983 |
ORF6 | 4 | L4L | ctC | ctT | 44 | 44 | B.1.177.54 | 0.026683 |
ORF6 | 4 | L4L | ctC | ctT | 44 | 44 | B.1.241 | 0.035714 |
ORF6 | 4 | L4L | ctC | ctT | 40 | 43 | AY.44 | 0.000243 |
ORF6 | 4 | L4L | ctC | ctG | 2 | 43 | AY.44 | 0.000012 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 43 | AY.44 | 0.000006 |
ORF6 | 4 | L4F | Ctc | Ttc | 43 | 43 | C.37 | 0.004991 |
ORF6 | 4 | L4L | ctC | ctT | 42 | 42 | B.1.221 | 0.002983 |
ORF6 | 4 | L4L | ctC | ctT | 42 | 42 | P.1.14 | 0.002008 |
ORF6 | 4 | L4del | CTC | --- | 41 | 41 | AY.4 | 0.000064 |
ORF6 | 4 | L4L | ctC | ctT | 39 | 40 | AY.29 | 0.000615 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 40 | AY.29 | 0.000016 |
ORF6 | 4 | L4del | CTC | --- | 40 | 40 | B.1.1.7 | 0.000036 |
ORF6 | 4 | L4L | ctC | ctT | 39 | 39 | B.1.243 | 0.002714 |
ORF6 | 4 | L4L | ctC | ctT | 38 | 38 | AY.26 | 0.001076 |
ORF6 | 4 | L4L | ctC | ctT | 37 | 37 | B.1.409 | 0.028906 |
ORF6 | 4 | L4L | ctC | ctT | 35 | 36 | AY.103 | 0.000217 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 36 | AY.103 | 0.000006 |
ORF6 | 4 | L4L | ctC | ctT | 36 | 36 | AY.14 | 0.003168 |
ORF6 | 4 | L4P | cTc | cCc | 36 | 36 | B.1.1.519 | 0.00143 |
ORF6 | 4 | L4L | ctC | ctT | 36 | 36 | B.1.525 | 0.004074 |
ORF6 | 4 | L4L | ctC | ctT | 35 | 35 | B.1.1.525 | 0.191257 |
ORF6 | 4 | L4L | ctC | ctT | 35 | 35 | B.1.177.81 | 0.006626 |
ORF6 | 4 | L4P | cTc | cCc | 33 | 33 | B.1.2 | 0.000291 |
ORF6 | 4 | L4L | ctC | ctT | 32 | 32 | B.1.427 | 0.001616 |
ORF6 | 4 | L4L | ctC | ctT | 32 | 32 | C.16 | 0.033934 |
ORF6 | 4 | L4R | cTc | cGc | 30 | 31 | All | 0.000006 |
ORF6 | 4 | L4R | cTC | cGA | 1 | 31 | All | 0 |
ORF6 | 4 | L4L | ctC | ctT | 30 | 30 | AY.4.2 | 0.000651 |
ORF6 | 4 | L4L | ctC | ctT | 30 | 30 | B.1.177.19 | 0.042918 |
ORF6 | 4 | L4L | ctC | ctT | 30 | 30 | B.1.177.44 | 0.015568 |
ORF6 | 4 | L4L | ctC | ctT | 27 | 28 | P.1.7 | 0.008621 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 28 | P.1.7 | 0.000319 |
ORF6 | 4 | L4L | ctC | ctT | 26 | 26 | B.1.234 | 0.003431 |
ORF6 | 4 | L4L | ctC | ctT | 22 | 25 | AY.43 | 0.000097 |
ORF6 | 4 | L4L | ctC | ctA | 3 | 25 | AY.43 | 0.000013 |
ORF6 | 4 | L4L | ctC | ctT | 24 | 24 | B.1.1.434 | 0.008365 |
ORF6 | 4 | L4L | ctC | ctT | 23 | 23 | B.1.1.317 | 0.009469 |
ORF6 | 4 | L4L | ctC | ctT | 22 | 22 | C.37 | 0.002553 |
ORF6 | 4 | L4del | CTC | --- | 21 | 21 | B.1.2 | 0.000185 |
ORF6 | 4 | L4L | ctC | ctT | 19 | 19 | B.1.160.28 | 0.055556 |
ORF6 | 4 | L4L | ctC | ctT | 15 | 17 | AY.75 | 0.00084 |
ORF6 | 4 | L4L | ctC | ctA | 2 | 17 | AY.75 | 0.000112 |
ORF6 | 4 | L4L | ctC | ctT | 17 | 17 | B.1.1.174 | 0.057432 |
ORF6 | 4 | L4L | ctC | ctT | 17 | 17 | B.1.351 | 0.000505 |
ORF6 | 4 | L4L | ctC | ctT | 17 | 17 | B.1.428 | 0.017347 |
ORF6 | 4 | L4del | CTC | --- | 16 | 16 | AY.103 | 0.000099 |
ORF6 | 4 | L4del | CTC | --- | 16 | 16 | AY.44 | 0.000097 |
ORF6 | 4 | L4L | ctC | ctT | 16 | 16 | B.1.1.28 | 0.00498 |
ORF6 | 4 | L4L | ctC | ctT | 16 | 16 | B.1.1.39 | 0.008155 |
ORF6 | 4 | L4F | Ctc | Ttc | 15 | 16 | B.1.1.7 | 0.000013 |
ORF6 | 4 | L4F | CtC | TtT | 1 | 16 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4L | ctC | ctT | 16 | 16 | B.1.416 | 0.020305 |
ORF6 | 4 | L4L | ctC | ctT | 15 | 15 | B.1.1.330 | 0.9375 |
ORF6 | 4 | L4L | ctC | ctT | 14 | 14 | AY.39 | 0.000346 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | AY.119 | 0.000459 |
ORF6 | 4 | L4R | cTc | cGc | 13 | 13 | AY.4 | 0.00002 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | B.1.1.306 | 0.005699 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | B.1.1.348 | 0.01035 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | B.1.177.32 | 0.017544 |
ORF6 | 4 | L4L | ctC | ctT | 13 | 13 | B.1.240 | 0.002802 |
ORF6 | 4 | L4del | CTC | --- | 13 | 13 | B.1.617.2 | 0.000049 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | AY.25 | 0.000072 |
ORF6 | 4 | L4del | CTC | --- | 12 | 12 | AY.3 | 0.000119 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | B.1.1.10 | 0.013378 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | B.1.177.73 | 0.006795 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | B.1.575 | 0.003641 |
ORF6 | 4 | L4L | ctC | ctT | 12 | 12 | B.1.595 | 0.003132 |
ORF6 | 4 | L4V | Ctc | Gtc | 7 | 11 | All | 0.000001 |
ORF6 | 4 | L4V | CtC | GtA | 3 | 11 | All | 0.000001 |
ORF6 | 4 | L4V | CtC | GtT | 1 | 11 | All | 0 |
ORF6 | 4 | L4del | CTC | --- | 11 | 11 | B.1 | 0.000101 |
ORF6 | 4 | L4L | ctC | ctT | 11 | 11 | B.1.1.284 | 0.001181 |
ORF6 | 4 | L4L | ctC | ctT | 10 | 11 | D.2 | 0.00075 |
ORF6 | 4 | L4L | ctC | ctG | 1 | 11 | D.2 | 0.000075 |
ORF6 | 4 | L4del1 | ctC | ct- | 4 | 10 | All | 0.000001 |
ORF6 | 4 | L4del1 | Ctc | -tc | 3 | 10 | All | 0.000001 |
ORF6 | 4 | L4del1 | CtC | At- | 1 | 10 | All | 0 |
ORF6 | 4 | L4del1 | CtC | -tT | 1 | 10 | All | 0 |
ORF6 | 4 | L4del1 | cTc | c-c | 1 | 10 | All | 0 |
ORF6 | 4 | L4L | ctC | ctT | 10 | 10 | AY.9.2 | 0.000367 |
ORF6 | 4 | L4F | Ctc | Ttc | 10 | 10 | B.1.177 | 0.000132 |
ORF6 | 4 | L4L | ctC | ctT | 10 | 10 | B.1.177.60 | 0.002184 |
ORF6 | 4 | L4F | Ctc | Ttc | 10 | 10 | B.1.2 | 0.000088 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 10 | B.1.466.2 | 0.003521 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 10 | B.1.466.2 | 0.000391 |
ORF6 | 4 | L4I | Ctc | Atc | 10 | 10 | B.1.621.1 | 0.005058 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | AY.16.1 | 0.004229 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | AY.20 | 0.00035 |
ORF6 | 4 | L4del | CTC | --- | 9 | 9 | AY.25 | 0.000054 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 9 | AY.3 | 0.00008 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 9 | AY.3 | 0.00001 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | AY.38 | 0.004493 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 9 | B.1.1.1 | 0.002287 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 9 | B.1.1.1 | 0.000327 |
ORF6 | 4 | L4L | ctC | ctG | 1 | 9 | B.1.1.1 | 0.000327 |
ORF6 | 4 | L4I | Ctc | Atc | 8 | 9 | B.1.1.7 | 0.000007 |
ORF6 | 4 | L4I | CtC | AtA | 1 | 9 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | B.1.596 | 0.000784 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | B.1.609 | 0.004314 |
ORF6 | 4 | L4L | ctC | ctT | 9 | 9 | C.13 | 0.230769 |
ORF6 | 4 | L4F | Ctc | Ttc | 8 | 8 | AY.103 | 0.00005 |
ORF6 | 4 | L4P | cTc | cCc | 8 | 8 | AY.4 | 0.000012 |
ORF6 | 4 | L4del | CTC | --- | 8 | 8 | AY.43 | 0.000035 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | AY.54 | 0.000763 |
ORF6 | 4 | L4del | CTC | --- | 8 | 8 | AY.6 | 0.000329 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.1.189 | 0.012103 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.1.214 | 0.000444 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.1.216 | 0.007124 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.1.291 | 0.005939 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.524 | 0.011252 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.637 | 0.000585 |
ORF6 | 4 | L4L | ctC | ctT | 8 | 8 | B.1.78 | 0.068376 |
ORF6 | 4 | L4del | CTC | --- | 7 | 7 | AY.29 | 0.00011 |
ORF6 | 4 | L4P | cTc | cCc | 7 | 7 | AY.39 | 0.000173 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | AY.98.1 | 0.000339 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 7 | B | 0.000767 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 7 | B | 0.000128 |
ORF6 | 4 | L4P | cTc | cCc | 7 | 7 | B.1.1 | 0.000127 |
ORF6 | 4 | L4P | cTc | cCc | 7 | 7 | B.1.177.28 | 0.051852 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | B.1.232 | 0.003761 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | B.1.349 | 0.005004 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | B.1.36 | 0.001021 |
ORF6 | 4 | L4L | ctC | ctT | 7 | 7 | B.1.362 | 0.010786 |
ORF6 | 4 | L4I | Ctc | Atc | 6 | 6 | AY.25 | 0.000036 |
ORF6 | 4 | L4I | Ctc | Atc | 6 | 6 | AY.4 | 0.000009 |
ORF6 | 4 | L4F | Ctc | Ttc | 6 | 6 | AY.43 | 0.000027 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | AY.8 | 0.003636 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | AY.80 | 0.006772 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.1.33 | 0.002525 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.1.54 | 0.018127 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.104 | 0.02214 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.147 | 0.004535 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | B.1.620 | 0.005676 |
ORF6 | 4 | L4L | ctC | ctT | 6 | 6 | P.1.15 | 0.001394 |
ORF6 | 4 | L4L | ctC | ctG | 5 | 5 | A.2 | 0.003309 |
ORF6 | 4 | L4P | cTc | cCc | 5 | 5 | A.27 | 0.008278 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | AY.100 | 0.00023 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | AY.120 | 0.000186 |
ORF6 | 4 | L4del | CTC | --- | 5 | 5 | AY.39.1 | 0.000198 |
ORF6 | 4 | L4F | Ctc | Ttc | 5 | 5 | AY.39.1 | 0.000198 |
ORF6 | 4 | L4F | Ctc | Ttc | 5 | 5 | AY.4 | 0.000008 |
ORF6 | 4 | L4I | Ctc | Atc | 3 | 5 | AY.75 | 0.000168 |
ORF6 | 4 | L4I | CtC | AtA | 2 | 5 | AY.75 | 0.000112 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | AZ.2 | 0.004105 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.1.1.101 | 0.05 |
ORF6 | 4 | L4H | cTc | cAc | 5 | 5 | B.1.1.7 | 0.000004 |
ORF6 | 4 | L4I | Ctc | Atc | 5 | 5 | B.1.221 | 0.000355 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.1.237 | 0.024876 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.1.538 | 0.040323 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 5 | B.1.617.1 | 0.000516 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 5 | B.1.617.1 | 0.000129 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.6 | 0.00455 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | B.6.6 | 0.004444 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | N.5 | 0.008834 |
ORF6 | 4 | L4L | ctC | ctT | 5 | 5 | Q.8 | 0.000825 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.102 | 0.000106 |
ORF6 | 4 | L4R | cTc | cGc | 4 | 4 | AY.103 | 0.000025 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.13 | 0.000644 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.16 | 0.001519 |
ORF6 | 4 | L4I | Ctc | Atc | 4 | 4 | AY.23 | 0.000279 |
ORF6 | 4 | L4F | Ctc | Ttc | 4 | 4 | AY.23 | 0.000279 |
ORF6 | 4 | L4del | CTC | --- | 4 | 4 | AY.34 | 0.000388 |
ORF6 | 4 | L4H | cTc | cAc | 4 | 4 | AY.4 | 0.000006 |
ORF6 | 4 | L4del | CTC | --- | 4 | 4 | AY.42 | 0.000161 |
ORF6 | 4 | L4del | CTC | --- | 4 | 4 | AY.5 | 0.000083 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.5 | 0.000083 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.5.4 | 0.001107 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.60 | 0.003752 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | AY.61 | 0.000419 |
ORF6 | 4 | L4I | Ctc | Atc | 4 | 4 | B.1 | 0.000037 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF6 | 4 | L4F | Ctc | Ttc | 4 | 4 | B.1.1.28 | 0.001245 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.316 | 0.0037 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.448 | 0.00813 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.485 | 0.066667 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.1.523 | 0.00625 |
ORF6 | 4 | L4I | Ctc | Atc | 4 | 4 | B.1.170 | 0.017241 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.177.6 | 0.003906 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.258.20 | 0.063492 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.36.1 | 0.004561 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.36.8 | 0.004 |
ORF6 | 4 | L4F | Ctc | Ttc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | B.1.628 | 0.001409 |
ORF6 | 4 | L4L | ctC | ctT | 4 | 4 | P.2 | 0.000747 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 3 | A | 0.000774 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 3 | A | 0.000387 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | A.27 | 0.004967 |
ORF6 | 4 | L4N | CTc | AAc | 3 | 3 | All | 0.000001 |
ORF6 | 4 | L4S | CTC | TCA | 1 | 3 | All | 0 |
ORF6 | 4 | L4S | CTC | TCT | 1 | 3 | All | 0 |
ORF6 | 4 | L4S | CTc | TCc | 1 | 3 | All | 0 |
ORF6 | 4 | L4P | cTc | cCc | 3 | 3 | AY.103 | 0.000019 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.113 | 0.000427 |
ORF6 | 4 | L4F | Ctc | Ttc | 3 | 3 | AY.120 | 0.000112 |
ORF6 | 4 | L4F | Ctc | Ttc | 3 | 3 | AY.25 | 0.000018 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.39.1 | 0.000119 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.4.5 | 0.000322 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.42 | 0.000121 |
ORF6 | 4 | L4I | Ctc | Atc | 3 | 3 | AY.43 | 0.000013 |
ORF6 | 4 | L4F | Ctc | Ttc | 3 | 3 | AY.44 | 0.000018 |
ORF6 | 4 | L4P | cTc | cCc | 3 | 3 | AY.44 | 0.000018 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.52 | 0.002443 |
ORF6 | 4 | L4del | CTC | --- | 3 | 3 | AY.59 | 0.001589 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 3 | AY.6 | 0.000082 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 3 | AY.6 | 0.000041 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.65 | 0.001599 |
ORF6 | 4 | L4H | cTc | cAc | 3 | 3 | AY.65 | 0.001599 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.68 | 0.000821 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | AY.9.1 | 0.000251 |
ORF6 | 4 | L4del | CTC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.176 | 0.001318 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.277 | 0.002276 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.354 | 0.013158 |
ORF6 | 4 | L4P | cTc | cCc | 3 | 3 | B.1.1.397 | 0.006757 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.44 | 0.007229 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.464 | 0.004418 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.514 | 0.115385 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.521 | 0.016043 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.84 | 0.272727 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.1.89 | 0.018182 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.139 | 0.002199 |
ORF6 | 4 | L4del | CTC | --- | 3 | 3 | B.1.160 | 0.000094 |
ORF6 | 4 | L4H | cTc | cAc | 3 | 3 | B.1.177 | 0.00004 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.258.24 | 0.032258 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.298 | 0.006342 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 3 | B.1.36.36 | 0.001204 |
ORF6 | 4 | L4L | ctC | ctG | 1 | 3 | B.1.36.36 | 0.000602 |
ORF6 | 4 | L4P | cTc | cCc | 3 | 3 | B.1.433 | 0.009585 |
ORF6 | 4 | L4F | Ctc | Ttc | 3 | 3 | B.1.466.2 | 0.001174 |
ORF6 | 4 | L4del | CTC | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF6 | 4 | L4V | Ctc | Gtc | 3 | 3 | B.1.526 | 0.000071 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | B.1.582 | 0.001472 |
ORF6 | 4 | L4P | cTc | cCc | 3 | 3 | B.1.596 | 0.000261 |
ORF6 | 4 | L4F | Ctc | Ttc | 3 | 3 | B.1.596 | 0.000261 |
ORF6 | 4 | L4F | Ctc | Ttc | 3 | 3 | P.1 | 0.000047 |
ORF6 | 4 | L4del | CTC | --- | 3 | 3 | P.1 | 0.000047 |
ORF6 | 4 | L4L | ctC | ctA | 2 | 3 | P.1.12 | 0.000968 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 3 | P.1.12 | 0.000484 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 3 | P.1.17 | 0.000324 |
ORF6 | 4 | L4L | ctC | ctG | 1 | 3 | P.1.17 | 0.000162 |
ORF6 | 4 | L4L | ctC | ctT | 3 | 3 | Q.1 | 0.000379 |
ORF6 | 4 | L4I | Ctc | Atc | 2 | 2 | A | 0.000774 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | A.1 | 0.000564 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | A.23.1 | 0.001408 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | A.29 | 0.010638 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | A.5 | 0.003846 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AD.2 | 0.000438 |
ORF6 | 4 | L4Q | cTC | cAA | 2 | 2 | All | 0 |
ORF6 | 4 | L4K | CTC | AAA | 2 | 2 | All | 0 |
ORF6 | 4 | L4T | CTC | ACA | 1 | 2 | All | 0 |
ORF6 | 4 | L4T | CTC | ACT | 1 | 2 | All | 0 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.102 | 0.000053 |
ORF6 | 4 | L4H | cTc | cAc | 2 | 2 | AY.103 | 0.000012 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.110 | 0.000225 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.113 | 0.000285 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.118 | 0.000125 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.16.1 | 0.00094 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.24 | 0.000862 |
ORF6 | 4 | L4H | cTc | cAc | 2 | 2 | AY.25 | 0.000012 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.27 | 0.000129 |
ORF6 | 4 | L4F | Ctc | Ttc | 2 | 2 | AY.3 | 0.00002 |
ORF6 | 4 | L4I | Ctc | Atc | 2 | 2 | AY.3 | 0.00002 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.30 | 0.000791 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.33 | 0.000134 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.40 | 0.001929 |
ORF6 | 4 | L4R | cTc | cGc | 2 | 2 | AY.44 | 0.000012 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.45 | 0.000243 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.47 | 0.000062 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | AY.53 | 0.000575 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.67 | 0.000929 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.74 | 0.000231 |
ORF6 | 4 | L4H | cTc | cAc | 2 | 2 | AY.75 | 0.000112 |
ORF6 | 4 | L4N | CTc | AAc | 2 | 2 | AY.75 | 0.000112 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | AY.90 | 0.001369 |
ORF6 | 4 | L4T | CTC | ACA | 1 | 2 | AY.99 | 0.001049 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 2 | AY.99 | 0.001049 |
ORF6 | 4 | L4I | CtC | AtT | 1 | 2 | AY.99 | 0.001049 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 2 | AY.99 | 0.001049 |
ORF6 | 4 | L4P | cTC | cCA | 1 | 2 | AY.99 | 0.001049 |
ORF6 | 4 | L4P | cTC | cCT | 1 | 2 | AY.99 | 0.001049 |
ORF6 | 4 | L4I | CtC | AtA | 1 | 2 | AY.99 | 0.001049 |
ORF6 | 4 | L4T | CTC | ACT | 1 | 2 | AY.99 | 0.001049 |
ORF6 | 4 | L4F | Ctc | Ttc | 2 | 2 | B.1 | 0.000018 |
ORF6 | 4 | L4V | CtC | GtT | 1 | 2 | B.1 | 0.000009 |
ORF6 | 4 | L4V | Ctc | Gtc | 1 | 2 | B.1 | 0.000009 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.328 | 0.033898 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.374 | 0.004751 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.376 | 0.011905 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF6 | 4 | L4P | cTc | cCc | 2 | 2 | B.1.1.416 | 0.00181 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.51 | 0.003436 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.56 | 0.035714 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF6 | 4 | L4I | Ctc | Atc | 2 | 2 | B.1.1.67 | 0.009132 |
ORF6 | 4 | L4del1 | ctC | ct- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4del1 | CtC | -tT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.1.83 | 0.00542 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.111 | 0.00235 |
ORF6 | 4 | L4P | cTc | cCc | 2 | 2 | B.1.139 | 0.001466 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.146 | 0.008475 |
ORF6 | 4 | L4I | Ctc | Atc | 2 | 2 | B.1.160 | 0.000062 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.177.17 | 0.001642 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 2 | B.1.177.21 | 0.000076 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 2 | B.1.177.21 | 0.000076 |
ORF6 | 4 | L4F | CtC | TtT | 1 | 2 | B.1.177.21 | 0.000076 |
ORF6 | 4 | L4L | ctC | ctG | 1 | 2 | B.1.177.21 | 0.000076 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.177.42 | 0.001789 |
ORF6 | 4 | L4P | cTc | cCc | 2 | 2 | B.1.177.57 | 0.000562 |
ORF6 | 4 | L4H | cTc | cAc | 2 | 2 | B.1.177.73 | 0.001133 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.195 | 0.01005 |
ORF6 | 4 | L4I | Ctc | Atc | 2 | 2 | B.1.2 | 0.000018 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.210 | 0.004264 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.222 | 0.003384 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.231 | 0.064516 |
ORF6 | 4 | L4H | cTc | cAc | 2 | 2 | B.1.243 | 0.000139 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.260 | 0.006689 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.293 | 0.025 |
ORF6 | 4 | L4P | cTc | cCc | 2 | 2 | B.1.351 | 0.000059 |
ORF6 | 4 | L4F | Ctc | Ttc | 2 | 2 | B.1.36 | 0.000292 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.36.10 | 0.009569 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.369 | 0.00057 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.404 | 0.002604 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.411 | 0.007407 |
ORF6 | 4 | L4del | CTC | --- | 2 | 2 | B.1.423 | 0.020408 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.456 | 0.006536 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.499 | 0.002101 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.503 | 0.004975 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.509 | 0.001732 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.1.568 | 0.002222 |
ORF6 | 4 | L4P | cTc | cCc | 2 | 2 | B.1.582 | 0.000981 |
ORF6 | 4 | L4F | Ctc | Ttc | 2 | 2 | B.40 | 0.000729 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | B.45 | 0.007663 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | C.1 | 0.004785 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | C.14 | 0.008658 |
ORF6 | 4 | L4L | ctC | ctT | 2 | 2 | C.30 | 0.003454 |
ORF6 | 4 | L4F | Ctc | Ttc | 2 | 2 | C.37.1 | 0.005236 |
ORF6 | 4 | L4F | Ctc | Ttc | 2 | 2 | D.2 | 0.00015 |
ORF6 | 4 | L4P | cTc | cCc | 2 | 2 | P.1 | 0.000032 |
ORF6 | 4 | L4H | cTc | cAc | 2 | 2 | P.1.14 | 0.000096 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | A.6 | 0.005128 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AA.7 | 0.009174 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AB.1 | 0.008197 |
ORF6 | 4 | L4M | CtC | AtG | 1 | 1 | All | 0 |
ORF6 | 4 | L4del2 | cTC | c-- | 1 | 1 | All | 0 |
ORF6 | 4 | L4C | CTC | TGT | 1 | 1 | All | 0 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AU.1 | 0.001266 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AW.1 | 0.003049 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.1 | 0.000396 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | AY.102 | 0.000027 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.111 | 0.000183 |
ORF6 | 4 | L4H | cTc | cAc | 1 | 1 | AY.111 | 0.000183 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | AY.113 | 0.000142 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.116 | 0.000287 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.116 | 0.000287 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.116.1 | 0.000311 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.118 | 0.000063 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.119 | 0.000035 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.12 | 0.000316 |
ORF6 | 4 | L4del1 | Ctc | -tc | 1 | 1 | AY.120.1 | 0.000321 |
ORF6 | 4 | L4del1 | ctC | ct- | 1 | 1 | AY.16 | 0.00038 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.23 | 0.00007 |
ORF6 | 4 | L4H | cTc | cAc | 1 | 1 | AY.23 | 0.00007 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.25 | 0.000006 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | AY.26 | 0.000028 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | AY.29 | 0.000016 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.29.1 | 0.000221 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.3.1 | 0.000085 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | AY.33 | 0.000067 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.34 | 0.000097 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.34 | 0.000097 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.34.1 | 0.00051 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.36 | 0.000148 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.37 | 0.000316 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.37 | 0.000316 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 4 | L4del1 | Ctc | -tc | 1 | 1 | AY.4 | 0.000002 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.4.1 | 0.000737 |
ORF6 | 4 | L4H | cTc | cAc | 1 | 1 | AY.4.2 | 0.000022 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.43 | 0.000004 |
ORF6 | 4 | L4V | Ctc | Gtc | 1 | 1 | AY.43 | 0.000004 |
ORF6 | 4 | L4H | cTc | cAc | 1 | 1 | AY.43 | 0.000004 |
ORF6 | 4 | L4H | cTc | cAc | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 4 | L4del1 | Ctc | -tc | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.45 | 0.000122 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.46.4 | 0.000165 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.46.5 | 0.000198 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.46.6 | 0.000072 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.46.6 | 0.000072 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.49 | 0.003195 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.5.2 | 0.002463 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.5.3 | 0.000337 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.58 | 0.000907 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | AY.6 | 0.000041 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.62 | 0.000436 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.63 | 0.000387 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.66 | 0.00107 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.67 | 0.000464 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.68 | 0.000274 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.69 | 0.000187 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 1 | AY.7.1 | 0.000113 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.72 | 0.001361 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.73 | 0.000665 |
ORF6 | 4 | L4K | CTC | AAA | 1 | 1 | AY.75 | 0.000056 |
ORF6 | 4 | L4Q | cTC | cAA | 1 | 1 | AY.75 | 0.000056 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.75.1 | 0.00018 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.76 | 0.004831 |
ORF6 | 4 | L4M | CtC | AtG | 1 | 1 | AY.82 | 0.001357 |
ORF6 | 4 | L4del1 | CtC | At- | 1 | 1 | AY.84 | 0.000437 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.88 | 0.000884 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.9 | 0.000068 |
ORF6 | 4 | L4R | cTC | cGA | 1 | 1 | AY.9.2 | 0.000037 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AY.93 | 0.000273 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AY.98 | 0.000079 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AY.98.1 | 0.000048 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | AY.99.2 | 0.000092 |
ORF6 | 4 | L4H | cTc | cAc | 1 | 1 | AY.99.2 | 0.000092 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | AZ.1 | 0.000867 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | AZ.2 | 0.000821 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AZ.3 | 0.00152 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | AZ.5 | 0.003509 |
ORF6 | 4 | L4V | CtC | GtA | 1 | 1 | B | 0.000128 |
ORF6 | 4 | L4del1 | cTc | c-c | 1 | 1 | B | 0.000128 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 4 | L4H | cTc | cAc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.115 | 0.008929 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.1.122 | 0.045455 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.1.161 | 0.003534 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.193 | 0.111111 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.196 | 0.005714 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.224 | 0.014286 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.1.241 | 0.00207 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.1.263 | 0.001558 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF6 | 4 | L4del1 | ctC | ct- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.1.316 | 0.000925 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.355 | 0.015385 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.356 | 0.008547 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.370 | 0.012658 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.1.397 | 0.002252 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.1.413 | 0.006897 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | B.1.1.46 | 0.004367 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.48 | 0.002874 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.522 | 0.017241 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.62 | 0.027027 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4S | CTC | TCT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4Q | cTC | cAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4N | CTc | AAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4K | CTC | AAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 4 | L4V | CtC | GtA | 1 | 1 | B.1.1.70 | 0.000341 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.161 | 0.017241 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF6 | 4 | L4del1 | ctC | ct- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF6 | 4 | L4H | cTC | cAT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.3 | 0.007634 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.177.42 | 0.000894 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.67 | 0.007634 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.177.87 | 0.000728 |
ORF6 | 4 | L4del2 | cTC | c-- | 1 | 1 | B.1.179 | 0.003759 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.179 | 0.003759 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.190 | 0.01 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.194 | 0.04 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | B.1.210 | 0.002132 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.227 | 0.047619 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.240 | 0.000216 |
ORF6 | 4 | L4S | CTC | TCA | 1 | 1 | B.1.240 | 0.000216 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | B.1.243 | 0.00007 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF6 | 4 | L4C | CTC | TGT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.258.21 | 0.007752 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.264 | 0.012346 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.265 | 0.001271 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.279 | 0.000514 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.284 | 0.013158 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.326 | 0.007576 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.340 | 0.004292 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.346 | 0.001311 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | B.1.351 | 0.00003 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.356 | 0.001727 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.36.7 | 0.004 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.361 | 0.001289 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.362 | 0.001541 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.369 | 0.000285 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.375 | 0.00082 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.389 | 0.001002 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.39 | 0.003906 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.391 | 0.001127 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.397 | 0.004854 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
ORF6 | 4 | L4R | cTc | cGc | 1 | 1 | B.1.400 | 0.000429 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.408 | 0.00369 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.421 | 0.007463 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | B.1.427 | 0.00005 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.437 | 0.020833 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.438 | 0.006536 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.453 | 0.003236 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.468 | 0.005714 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.489 | 0.043478 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.494 | 0.034483 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.521 | 0.004975 |
ORF6 | 4 | L4V | Ctc | Gtc | 1 | 1 | B.1.525 | 0.000113 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.532 | 0.006211 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 1 | B.1.537 | 0.02 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.541 | 0.004425 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.546 | 0.003704 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.551 | 0.00129 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.564 | 0.000426 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.571 | 0.009709 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.575.2 | 0.004808 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.577 | 0.000687 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.580 | 0.004065 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.580 | 0.004065 |
ORF6 | 4 | L4S | CTc | TCc | 1 | 1 | B.1.582 | 0.000491 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.588 | 0.00091 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.588 | 0.00091 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | B.1.596 | 0.000087 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.599 | 0.00365 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.606 | 0.006024 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.610 | 0.003546 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.611 | 0.04 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.612 | 0.002653 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF6 | 4 | L4V | Ctc | Gtc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.619 | 0.000871 |
ORF6 | 4 | L4H | cTc | cAc | 1 | 1 | B.1.621 | 0.000089 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | B.1.621 | 0.000089 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.1.621 | 0.000089 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | B.1.621 | 0.000089 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.623 | 0.000536 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.627 | 0.00202 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.634 | 0.003425 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.8 | 0.001972 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.1.94 | 0.027027 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.29 | 0.003509 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.3 | 0.000831 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.3.1 | 0.001658 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.4 | 0.002208 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF6 | 4 | L4V | CtC | GtA | 1 | 1 | B.55 | 0.00295 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | B.56 | 0.028571 |
ORF6 | 4 | L4I | Ctc | Atc | 1 | 1 | B.6.6 | 0.000889 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | C.35 | 0.000774 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | C.36.3 | 0.000567 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | C.39 | 0.018868 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | K.1 | 0.02381 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | N.4 | 0.004255 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | N.5 | 0.001767 |
ORF6 | 4 | L4L | ctC | ctA | 1 | 1 | P.1.1 | 0.000318 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | P.1.10 | 0.000269 |
ORF6 | 4 | L4F | Ctc | Ttc | 1 | 1 | P.1.12 | 0.000484 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | P.1.17.1 | 0.000875 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | P.2 | 0.000187 |
ORF6 | 4 | L4P | cTc | cCc | 1 | 1 | Q.1 | 0.000126 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | Q.4 | 0.000455 |
ORF6 | 4 | L4del | CTC | --- | 1 | 1 | R.1 | 0.00009 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | W.4 | 0.001351 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | Y.1 | 0.012821 |
ORF6 | 4 | L4L | ctC | ctT | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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