CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 31 | Y31del | del | TAC | --- | 760 | 760 | 1 | 27292-27294 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 31 | Y31del | TAC | --- | 760 | 760 | All | 0.000145 |
ORF6 | 31 | Y31del | TAC | --- | 138 | 138 | AY.4 | 0.000215 |
ORF6 | 31 | Y31del | TAC | --- | 97 | 97 | B.1.1.7 | 0.000087 |
ORF6 | 31 | Y31del | TAC | --- | 64 | 64 | AY.4.2 | 0.001388 |
ORF6 | 31 | Y31del | TAC | --- | 44 | 44 | AY.44 | 0.000268 |
ORF6 | 31 | Y31del | TAC | --- | 41 | 41 | B.1.616 | 1 |
ORF6 | 31 | Y31del | TAC | --- | 28 | 28 | B.1.617.2 | 0.000105 |
ORF6 | 31 | Y31del | TAC | --- | 22 | 22 | AY.3 | 0.000219 |
ORF6 | 31 | Y31del | TAC | --- | 20 | 20 | AY.84 | 0.008749 |
ORF6 | 31 | Y31del | TAC | --- | 20 | 20 | B.1 | 0.000183 |
ORF6 | 31 | Y31del | TAC | --- | 16 | 16 | AY.103 | 0.000099 |
ORF6 | 31 | Y31del | TAC | --- | 16 | 16 | AY.25 | 0.000096 |
ORF6 | 31 | Y31del | TAC | --- | 15 | 15 | B.1.177.21 | 0.001147 |
ORF6 | 31 | Y31del | TAC | --- | 14 | 14 | AY.43 | 0.000062 |
ORF6 | 31 | Y31del | TAC | --- | 14 | 14 | B.1.2 | 0.000123 |
ORF6 | 31 | Y31del | TAC | --- | 11 | 11 | P.1 | 0.000173 |
ORF6 | 31 | Y31del | TAC | --- | 9 | 9 | AY.26 | 0.000255 |
ORF6 | 31 | Y31del | TAC | --- | 9 | 9 | AY.47 | 0.00028 |
ORF6 | 31 | Y31del | TAC | --- | 9 | 9 | B.1.429 | 0.000212 |
ORF6 | 31 | Y31del | TAC | --- | 8 | 8 | AY.29 | 0.000126 |
ORF6 | 31 | Y31del | TAC | --- | 8 | 8 | AY.75 | 0.000448 |
ORF6 | 31 | Y31del | TAC | --- | 7 | 7 | AY.119 | 0.000247 |
ORF6 | 31 | Y31del | TAC | --- | 7 | 7 | AY.13 | 0.001127 |
ORF6 | 31 | Y31del | TAC | --- | 7 | 7 | AY.39 | 0.000173 |
ORF6 | 31 | Y31del | TAC | --- | 7 | 7 | AY.39.1 | 0.000277 |
ORF6 | 31 | Y31del | TAC | --- | 7 | 7 | AY.71 | 0.003325 |
ORF6 | 31 | Y31del | TAC | --- | 6 | 6 | AY.118 | 0.000376 |
ORF6 | 31 | Y31del | TAC | --- | 6 | 6 | AY.9.2 | 0.00022 |
ORF6 | 31 | Y31del | TAC | --- | 4 | 4 | AY.5 | 0.000083 |
ORF6 | 31 | Y31del | TAC | --- | 4 | 4 | AY.6 | 0.000165 |
ORF6 | 31 | Y31del | TAC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF6 | 31 | Y31del | TAC | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF6 | 31 | Y31del | TAC | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF6 | 31 | Y31del | TAC | --- | 3 | 3 | AY.116 | 0.00086 |
ORF6 | 31 | Y31del | TAC | --- | 3 | 3 | AY.9.1 | 0.000251 |
ORF6 | 31 | Y31del | TAC | --- | 3 | 3 | B.1.427 | 0.000151 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.2 | 0.000712 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.34.1 | 0.00102 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.37 | 0.000632 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.40 | 0.001929 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.42 | 0.00008 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.45 | 0.000243 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.46 | 0.000208 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.51 | 0.001818 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.53 | 0.000575 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.70 | 0.000417 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.98 | 0.000158 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | AY.98.1 | 0.000097 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | B.1.1.222 | 0.000408 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | B.1.1.461 | 0.024096 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | B.1.234 | 0.000264 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF6 | 31 | Y31del | TAC | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | A.1 | 0.000282 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.102 | 0.000027 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.117 | 0.000085 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.12 | 0.000316 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.14 | 0.000088 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.20 | 0.000039 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.34 | 0.000097 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.46.3 | 0.000934 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.48 | 0.000465 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.73 | 0.000665 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | C.2.1 | 0.006667 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | C.37 | 0.000116 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF6 | 31 | Y31del | TAC | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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