CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF6 : CodonNum = 29

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF629L29deldelCTT---27432743127286-27288
ORF629L29FnonsynCttTtt4184170.99760827286-27288
ORF629L29FnonsynCtTTtC41810.0023923427286-27288
ORF629L29del2delcTTc--146146127286-27288
ORF629L29LsynctTctC107800.74766427286-27288
ORF629L29LsynctTctA107100.093457927286-27288
ORF629L29LsynCtTTtA10790.084112227286-27288
ORF629L29LsynCtTTtG10740.037383227286-27288
ORF629L29LsynctTctG10740.037383227286-27288
ORF629L29PnonsyncTtcCt72700.97222227286-27288
ORF629L29PnonsyncTTcCC7210.013888927286-27288
ORF629L29PnonsyncTTcCA7210.013888927286-27288
ORF629L29InonsynCttAtt49420.85714327286-27288
ORF629L29InonsynCtTAtA4960.12244927286-27288
ORF629L29InonsynCtTAtC4910.020408227286-27288
ORF629L29RnonsyncTtcGt4747127286-27288
ORF629L29del1delCtt-tt45400.88888927286-27288
ORF629L29del1delCtT-tA4520.044444427286-27288
ORF629L29del1delcTtc-t4520.044444427286-27288
ORF629L29del1delCTt-Ct4510.022222227286-27288
ORF629L29TnonsynCTTACA15110.73333327286-27288
ORF629L29TnonsynCTtACt1540.26666727286-27288
ORF629L29VnonsynCttGtt66127286-27288
ORF629L29XnonsynCTTTAG420.527286-27288
ORF629L29XnonsynCTTTAA420.527286-27288
ORF629L29DnonsynCTtGAt33127286-27288
ORF629L29QnonsyncTTcAA33127286-27288
ORF629L29HnonsyncTtcAt22127286-27288
ORF629L29SnonsynCTtTCt22127286-27288
ORF629L29NnonsynCTTAAC11127286-27288
ORF629L29GnonsynCTTGGG11127286-27288
ORF629L29YnonsynCTtTAt11127286-27288

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF629L29delCTT---27432743All0.000525
ORF629L29delCTT---625625AY.40.000973
ORF629L29FCttTtt417418All0.00008
ORF629L29FCtTTtC1418All0
ORF629L29delCTT---352352B.1.1.70.000315
ORF629L29del2cTTc--146146All0.000028
ORF629L29FCttTtt111111B.1.1.70.000099
ORF629L29LctTctC80107All0.000015
ORF629L29LctTctA10107All0.000002
ORF629L29LCtTTtA9107All0.000002
ORF629L29LctTctG4107All0.000001
ORF629L29LCtTTtG4107All0.000001
ORF629L29delCTT---105105B.1.617.20.000395
ORF629L29delCTT---104104AY.440.000633
ORF629L29delCTT---103103AY.430.000456
ORF629L29delCTT---9696AY.4.20.002082
ORF629L29delCTT---8888AY.250.000529
ORF629L29PcTtcCt7072All0.000013
ORF629L29PcTTcCA172All0
ORF629L29PcTTcCC172All0
ORF629L29del2cTTc--6666AY.40.000103
ORF629L29FCttTtt6666AY.40.000103
ORF629L29delCTT---6262B.10.000568
ORF629L29delCTT---6060AY.30.000597
ORF629L29delCTT---5959AY.1030.000366
ORF629L29delCTT---5959AY.470.001835
ORF629L29delCTT---5656AY.1200.002082
ORF629L29ICttAtt4249All0.000008
ORF629L29ICtTAtA649All0.000001
ORF629L29ICtTAtC149All0
ORF629L29delCTT---4848B.1.20.000423
ORF629L29RcTtcGt4747All0.000009
ORF629L29del1Ctt-tt4045All0.000008
ORF629L29del1CtT-tA245All0
ORF629L29del1cTtc-t245All0
ORF629L29del1CTt-Ct145All0
ORF629L29delCTT---4141B.1.6161
ORF629L29RcTtcGt3838B.1.1.70.000034
ORF629L29FCttTtt3838B.1.177.210.002906
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ORF629L29delCTT---3636AY.390.00089
ORF629L29delCTT---3232N.81
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ORF629L29delCTT---2424AY.260.000679
ORF629L29delCTT---2323AY.1110.004212
ORF629L29delCTT---2323AY.50.000475
ORF629L29delCTT---2121AY.840.009186
ORF629L29delCTT---2020B.1.1080.116279
ORF629L29PcTtcCt1919AY.40.00003
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ORF629L29LctTctC1818AY.330.001202
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ORF629L29TCTTACA1115All0.000002
ORF629L29TCTtACt415All0.000001
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ORF629L29delCTT---1515AY.420.000603
ORF629L29delCTT---1414AY.540.001335
ORF629L29PcTtcCt1414AY.98.10.000678
ORF629L29LctTctC1114B.1.1.70.00001
ORF629L29LctTctA214B.1.1.70.000002
ORF629L29LctTctG114B.1.1.70.000001
ORF629L29delCTT---1313AY.900.008898
ORF629L29del1Ctt-tt1313B.1.1050.125
ORF629L29delCTT---1212AY.1190.000424
ORF629L29LCtTTtA912B.1.177.210.000688
ORF629L29LCtTTtG312B.1.177.210.000229
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ORF629L29LctTctC712B.1.617.20.000026
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ORF629L29LctTctG112B.1.617.20.000004
ORF629L29LCtTTtG112B.1.617.20.000004
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ORF629L29del2cTTc--88AY.260.000226
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ORF629L29VCttGtt66All0.000001
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ORF629L29LctTctC44AY.390.000099
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ORF629L29FCttTtt44AY.9.20.000147
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ORF629L29delCTT---44B.1.1.5190.000159
ORF629L29FCttTtt44B.1.1770.000053
ORF629L29del1CtT-tA24B.1.177.210.000153
ORF629L29del1CTt-Ct14B.1.177.210.000076
ORF629L29del1Ctt-tt14B.1.177.210.000076
ORF629L29delCTT---44B.1.5250.000453
ORF629L29delCTT---44P.1.170.000647
ORF629L29FCttTtt33AD.20.000657
ORF629L29QcTTcAA33All0.000001
ORF629L29DCTtGAt33All0.000001
ORF629L29del2cTTc--33AY.100.00159
ORF629L29del1Ctt-tt33AY.1030.000019
ORF629L29delCTT---33AY.120.000948
ORF629L29PcTtcCt23AY.1200.000074
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ORF629L29FCttTtt33AY.140.000264
ORF629L29delCTT---33AY.20.001068
ORF629L29FCttTtt33AY.30.00003
ORF629L29delCTT---33AY.4.50.000322
ORF629L29del1Ctt-tt23AY.440.000012
ORF629L29del1cTtc-t13AY.440.000006
ORF629L29delCTT---33AY.46.60.000217
ORF629L29delCTT---33AY.710.001425
ORF629L29ICttAtt33AY.930.000819
ORF629L29FCttTtt33B.1.10.000054
ORF629L29del1Ctt-tt33B.1.177.100.002634
ORF629L29FCttTtt33B.1.177.770.002179
ORF629L29del2cTTc--33B.1.20.000026
ORF629L29delCTT---33B.1.214.20.001799
ORF629L29FCttTtt33B.1.4290.000071
ORF629L29del1Ctt-tt33B.1.4290.000071
ORF629L29LctTctC33B.1.4290.000071
ORF629L29delCTT---33B.1.6370.000219
ORF629L29delCTT---33C.370.000348
ORF629L29LctTctG220.111111
ORF629L29PcTtcCt220.111111
ORF629L29XCTTTAG220.111111
ORF629L29SCTtTCt22All0
ORF629L29HcTtcAt22All0
ORF629L29del2cTTc--22AY.10.000791
ORF629L29TCTtACt22AY.1000.000092
ORF629L29del2cTTc--22AY.1030.000012
ORF629L29PcTtcCt22AY.1030.000012
ORF629L29delCTT---22AY.120.20.002571
ORF629L29delCTT---22AY.230.000139
ORF629L29delCTT---22AY.280.003781
ORF629L29FCttTtt22AY.290.000032
ORF629L29LctTctC22AY.290.000032
ORF629L29del2cTTc--22AY.3.10.000171
ORF629L29FCttTtt22AY.300.000791
ORF629L29FCttTtt22AY.340.000194
ORF629L29FCttTtt22AY.390.000049
ORF629L29RcTtcGt22AY.40.000003
ORF629L29ICttAtt22AY.40.000003
ORF629L29del1cTtc-t12AY.40.000002
ORF629L29del1Ctt-tt12AY.40.000002
ORF629L29del2cTTc--22AY.4.20.000043
ORF629L29FCttTtt22AY.4.20.000043
ORF629L29delCTT---22AY.400.001929
ORF629L29LctTctC22AY.420.00008
ORF629L29ICttAtt22AY.430.000009
ORF629L29PcTtcCt22AY.430.000009
ORF629L29ICttAtt22AY.440.000012
ORF629L29delCTT---22AY.46.20.001271
ORF629L29del2cTTc--22AY.50.000041
ORF629L29delCTT---22AY.520.001629
ORF629L29delCTT---22AY.530.000575
ORF629L29del1Ctt-tt22AY.740.000231
ORF629L29delCTT---22AY.75.10.000361
ORF629L29delCTT---22AY.90.000135
ORF629L29PcTtcCt22AY.9.10.000167
ORF629L29FCttTtt22AY.960.004149
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ORF629L29ICttAtt22B.1.1770.000026
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