CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 28 | N28del | del | AAT | --- | 2801 | 2801 | 1 | 27283-27285 | |
ORF6 | 28 | N28N | syn | aaT | aaC | 392 | 392 | 1 | 27283-27285 | |
ORF6 | 28 | N28H | nonsyn | Aat | Cat | 104 | 103 | 0.990385 | 27283-27285 | |
ORF6 | 28 | N28H | nonsyn | AaT | CaC | 104 | 1 | 0.00961538 | 27283-27285 | |
ORF6 | 28 | N28D | nonsyn | Aat | Gat | 97 | 97 | 1 | 27283-27285 | |
ORF6 | 28 | N28K | nonsyn | aaT | aaA | 45 | 38 | 0.844444 | 27283-27285 | |
ORF6 | 28 | N28K | nonsyn | aaT | aaG | 45 | 7 | 0.155556 | 27283-27285 | |
ORF6 | 28 | N28Y | nonsyn | Aat | Tat | 42 | 42 | 1 | 27283-27285 | |
ORF6 | 28 | N28del2 | del | AAt | --t | 23 | 19 | 0.826087 | 27283-27285 | |
ORF6 | 28 | N28del2 | del | aAT | a-- | 23 | 4 | 0.173913 | 27283-27285 | |
ORF6 | 28 | N28E | nonsyn | AaT | GaA | 13 | 13 | 1 | 27283-27285 | |
ORF6 | 28 | N28I | nonsyn | aAt | aTt | 13 | 11 | 0.846154 | 27283-27285 | |
ORF6 | 28 | N28I | nonsyn | aAT | aTA | 13 | 1 | 0.0769231 | 27283-27285 | |
ORF6 | 28 | N28I | nonsyn | aAT | aTC | 13 | 1 | 0.0769231 | 27283-27285 | |
ORF6 | 28 | N28R | nonsyn | aAT | aGA | 11 | 11 | 1 | 27283-27285 | |
ORF6 | 28 | N28L | nonsyn | AAT | CTG | 11 | 10 | 0.909091 | 27283-27285 | |
ORF6 | 28 | N28del1 | del | Aat | -at | 11 | 8 | 0.727273 | 27283-27285 | |
ORF6 | 28 | N28del1 | del | aaT | aa- | 11 | 2 | 0.181818 | 27283-27285 | |
ORF6 | 28 | N28L | nonsyn | AAt | CTt | 11 | 1 | 0.0909091 | 27283-27285 | |
ORF6 | 28 | N28del1 | del | AAT | -NN | 11 | 1 | 0.0909091 | 27283-27285 | |
ORF6 | 28 | N28S | nonsyn | aAt | aGt | 6 | 5 | 0.833333 | 27283-27285 | |
ORF6 | 28 | N28S | nonsyn | AAt | TCt | 6 | 1 | 0.166667 | 27283-27285 | |
ORF6 | 28 | N28M | nonsyn | aAT | aTG | 5 | 5 | 1 | 27283-27285 | |
ORF6 | 28 | N28X | nonsyn | AaT | TaA | 5 | 3 | 0.6 | 27283-27285 | |
ORF6 | 28 | N28X | nonsyn | AAT | TGA | 5 | 2 | 0.4 | 27283-27285 | |
ORF6 | 28 | N28T | nonsyn | aAt | aCt | 4 | 3 | 0.75 | 27283-27285 | |
ORF6 | 28 | N28T | nonsyn | aAT | aCC | 4 | 1 | 0.25 | 27283-27285 | |
ORF6 | 28 | N28P | nonsyn | AAt | CCt | 2 | 2 | 1 | 27283-27285 | |
ORF6 | 28 | N28G | nonsyn | AAT | GGA | 1 | 1 | 1 | 27283-27285 | |
ORF6 | 28 | N28V | nonsyn | AAT | GTA | 1 | 1 | 1 | 27283-27285 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 28 | N28del | AAT | --- | 2801 | 2801 | All | 0.000536 |
ORF6 | 28 | N28del | AAT | --- | 626 | 626 | AY.4 | 0.000974 |
ORF6 | 28 | N28N | aaT | aaC | 392 | 392 | All | 0.000075 |
ORF6 | 28 | N28del | AAT | --- | 358 | 358 | B.1.1.7 | 0.00032 |
ORF6 | 28 | N28del | AAT | --- | 109 | 109 | B.1.617.2 | 0.00041 |
ORF6 | 28 | N28N | aaT | aaC | 108 | 108 | B.1.1.7 | 0.000097 |
ORF6 | 28 | N28del | AAT | --- | 106 | 106 | AY.43 | 0.00047 |
ORF6 | 28 | N28del | AAT | --- | 106 | 106 | AY.44 | 0.000645 |
ORF6 | 28 | N28H | Aat | Cat | 103 | 104 | All | 0.00002 |
ORF6 | 28 | N28H | AaT | CaC | 1 | 104 | All | 0 |
ORF6 | 28 | N28D | Aat | Gat | 97 | 97 | All | 0.000019 |
ORF6 | 28 | N28del | AAT | --- | 96 | 96 | AY.4.2 | 0.002082 |
ORF6 | 28 | N28del | AAT | --- | 91 | 91 | AY.25 | 0.000547 |
ORF6 | 28 | N28del | AAT | --- | 63 | 63 | B.1 | 0.000577 |
ORF6 | 28 | N28del | AAT | --- | 62 | 62 | AY.103 | 0.000385 |
ORF6 | 28 | N28del | AAT | --- | 59 | 59 | AY.3 | 0.000587 |
ORF6 | 28 | N28del | AAT | --- | 59 | 59 | AY.47 | 0.001835 |
ORF6 | 28 | N28del | AAT | --- | 56 | 56 | AY.120 | 0.002082 |
ORF6 | 28 | N28N | aaT | aaC | 53 | 53 | AY.103 | 0.000329 |
ORF6 | 28 | N28N | aaT | aaC | 53 | 53 | AY.4 | 0.000082 |
ORF6 | 28 | N28del | AAT | --- | 50 | 50 | B.1.2 | 0.00044 |
ORF6 | 28 | N28K | aaT | aaA | 38 | 45 | All | 0.000007 |
ORF6 | 28 | N28K | aaT | aaG | 7 | 45 | All | 0.000001 |
ORF6 | 28 | N28H | Aat | Cat | 45 | 45 | AY.4 | 0.00007 |
ORF6 | 28 | N28Y | Aat | Tat | 42 | 42 | All | 0.000008 |
ORF6 | 28 | N28del | AAT | --- | 41 | 41 | B.1.616 | 1 |
ORF6 | 28 | N28del | AAT | --- | 39 | 39 | P.1 | 0.000614 |
ORF6 | 28 | N28del | AAT | --- | 36 | 36 | AY.39 | 0.00089 |
ORF6 | 28 | N28del | AAT | --- | 32 | 32 | N.8 | 1 |
ORF6 | 28 | N28D | Aat | Gat | 27 | 27 | AY.4 | 0.000042 |
ORF6 | 28 | N28del | AAT | --- | 25 | 25 | AY.5 | 0.000516 |
ORF6 | 28 | N28del | AAT | --- | 25 | 25 | B.1.526 | 0.000588 |
ORF6 | 28 | N28del | AAT | --- | 24 | 24 | AY.26 | 0.000679 |
ORF6 | 28 | N28K | aaT | aaA | 23 | 24 | B.1.1.7 | 0.000021 |
ORF6 | 28 | N28K | aaT | aaG | 1 | 24 | B.1.1.7 | 0.000001 |
ORF6 | 28 | N28del2 | AAt | --t | 19 | 23 | All | 0.000004 |
ORF6 | 28 | N28del2 | aAT | a-- | 4 | 23 | All | 0.000001 |
ORF6 | 28 | N28del | AAT | --- | 23 | 23 | AY.111 | 0.004212 |
ORF6 | 28 | N28del | AAT | --- | 21 | 21 | AY.84 | 0.009186 |
ORF6 | 28 | N28H | Aat | Cat | 20 | 20 | AY.46 | 0.002082 |
ORF6 | 28 | N28del | AAT | --- | 20 | 20 | B.1.108 | 0.116279 |
ORF6 | 28 | N28D | Aat | Gat | 20 | 20 | B.1.177.21 | 0.001529 |
ORF6 | 28 | N28del | AAT | --- | 18 | 18 | B.1.177.21 | 0.001376 |
ORF6 | 28 | N28N | aaT | aaC | 18 | 18 | B.1.617.2 | 0.000068 |
ORF6 | 28 | N28del | AAT | --- | 17 | 17 | AY.13 | 0.002737 |
ORF6 | 28 | N28del | AAT | --- | 17 | 17 | AY.75 | 0.000952 |
ORF6 | 28 | N28del | AAT | --- | 16 | 16 | AY.118 | 0.001002 |
ORF6 | 28 | N28del | AAT | --- | 15 | 15 | AY.29 | 0.000237 |
ORF6 | 28 | N28del | AAT | --- | 15 | 15 | AY.36 | 0.002223 |
ORF6 | 28 | N28del | AAT | --- | 15 | 15 | AY.42 | 0.000603 |
ORF6 | 28 | N28Y | Aat | Tat | 15 | 15 | B.1.177.21 | 0.001147 |
ORF6 | 28 | N28del | AAT | --- | 14 | 14 | AY.54 | 0.001335 |
ORF6 | 28 | N28N | aaT | aaC | 14 | 14 | B.1.1.220 | 0.026022 |
ORF6 | 28 | N28H | Aat | Cat | 14 | 14 | B.1.1.7 | 0.000013 |
ORF6 | 28 | N28E | AaT | GaA | 13 | 13 | All | 0.000002 |
ORF6 | 28 | N28I | aAt | aTt | 11 | 13 | All | 0.000002 |
ORF6 | 28 | N28I | aAT | aTA | 1 | 13 | All | 0 |
ORF6 | 28 | N28I | aAT | aTC | 1 | 13 | All | 0 |
ORF6 | 28 | N28del | AAT | --- | 13 | 13 | AY.119 | 0.000459 |
ORF6 | 28 | N28del | AAT | --- | 13 | 13 | AY.90 | 0.008898 |
ORF6 | 28 | N28D | Aat | Gat | 13 | 13 | B.1.1.7 | 0.000012 |
ORF6 | 28 | N28del | AAT | --- | 13 | 13 | B.1.105 | 0.125 |
ORF6 | 28 | N28del | AAT | --- | 13 | 13 | B.1.429 | 0.000306 |
ORF6 | 28 | N28N | aaT | aaC | 12 | 12 | AY.111 | 0.002198 |
ORF6 | 28 | N28del | AAT | --- | 12 | 12 | AY.20 | 0.000466 |
ORF6 | 28 | N28del | AAT | --- | 12 | 12 | AY.85 | 0.005126 |
ORF6 | 28 | N28E | AaT | GaA | 12 | 12 | B.1.177.21 | 0.000918 |
ORF6 | 28 | N28del | AAT | --- | 12 | 12 | B.1.36.36 | 0.007225 |
ORF6 | 28 | N28R | aAT | aGA | 11 | 11 | All | 0.000002 |
ORF6 | 28 | N28L | AAT | CTG | 10 | 11 | All | 0.000002 |
ORF6 | 28 | N28del1 | Aat | -at | 8 | 11 | All | 0.000002 |
ORF6 | 28 | N28del1 | aaT | aa- | 2 | 11 | All | 0 |
ORF6 | 28 | N28L | AAt | CTt | 1 | 11 | All | 0 |
ORF6 | 28 | N28del1 | AAT | -NN | 1 | 11 | All | 0 |
ORF6 | 28 | N28del | AAT | --- | 11 | 11 | AY.113 | 0.001566 |
ORF6 | 28 | N28R | aAT | aGA | 11 | 11 | AY.4 | 0.000017 |
ORF6 | 28 | N28del | AAT | --- | 11 | 11 | AY.9.2 | 0.000404 |
ORF6 | 28 | N28L | AAT | CTG | 10 | 11 | B.1.177.21 | 0.000765 |
ORF6 | 28 | N28L | AAt | CTt | 1 | 11 | B.1.177.21 | 0.000076 |
ORF6 | 28 | N28del | AAT | --- | 10 | 10 | AY.100 | 0.00046 |
ORF6 | 28 | N28del | AAT | --- | 10 | 10 | AY.14 | 0.00088 |
ORF6 | 28 | N28del | AAT | --- | 10 | 10 | AY.39.1 | 0.000396 |
ORF6 | 28 | N28del | AAT | --- | 10 | 10 | AY.45 | 0.001217 |
ORF6 | 28 | N28del | AAT | --- | 10 | 10 | AY.46 | 0.001041 |
ORF6 | 28 | N28N | aaT | aaC | 10 | 10 | B.1 | 0.000092 |
ORF6 | 28 | N28del | AAT | --- | 9 | 9 | AY.106 | 0.003014 |
ORF6 | 28 | N28del | AAT | --- | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF6 | 28 | N28del | AAT | --- | 8 | 8 | AY.102 | 0.000212 |
ORF6 | 28 | N28N | aaT | aaC | 8 | 8 | AY.43 | 0.000035 |
ORF6 | 28 | N28del | AAT | --- | 8 | 8 | AY.46.5 | 0.001587 |
ORF6 | 28 | N28N | aaT | aaC | 8 | 8 | B.1.1.263 | 0.012461 |
ORF6 | 28 | N28N | aaT | aaC | 8 | 8 | B.1.1.372 | 0.00551 |
ORF6 | 28 | N28N | aaT | aaC | 8 | 8 | B.1.177 | 0.000105 |
ORF6 | 28 | N28del | AAT | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF6 | 28 | N28del | AAT | --- | 8 | 8 | B.1.240 | 0.001725 |
ORF6 | 28 | N28del | AAT | --- | 8 | 8 | B.1.351 | 0.000238 |
ORF6 | 28 | N28N | aaT | aaC | 7 | 7 | AY.39 | 0.000173 |
ORF6 | 28 | N28K | aaT | aaA | 7 | 7 | AY.43 | 0.000031 |
ORF6 | 28 | N28del | AAT | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF6 | 28 | N28del | AAT | --- | 7 | 7 | B.1.234 | 0.000924 |
ORF6 | 28 | N28del | AAT | --- | 7 | 7 | B.1.351.2 | 0.002118 |
ORF6 | 28 | N28del | AAT | --- | 7 | 7 | B.1.621 | 0.00062 |
ORF6 | 28 | N28S | aAt | aGt | 5 | 6 | All | 0.000001 |
ORF6 | 28 | N28S | AAt | TCt | 1 | 6 | All | 0 |
ORF6 | 28 | N28del | AAT | --- | 6 | 6 | AY.27 | 0.000388 |
ORF6 | 28 | N28del | AAT | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF6 | 28 | N28del | AAT | --- | 6 | 6 | AY.6 | 0.000247 |
ORF6 | 28 | N28del | AAT | --- | 6 | 6 | AY.61 | 0.000629 |
ORF6 | 28 | N28del | AAT | --- | 6 | 6 | B.1.1.214 | 0.000333 |
ORF6 | 28 | N28Y | Aat | Tat | 6 | 6 | B.1.1.7 | 0.000005 |
ORF6 | 28 | N28Y | Aat | Tat | 6 | 6 | B.1.177.7 | 0.000989 |
ORF6 | 28 | N28N | aaT | aaC | 6 | 6 | B.1.243 | 0.000418 |
ORF6 | 28 | N28del | AAT | --- | 6 | 6 | B.1.258 | 0.000399 |
ORF6 | 28 | N28del | AAT | --- | 6 | 6 | B.1.311 | 0.001647 |
ORF6 | 28 | N28N | aaT | aaC | 6 | 6 | P.1 | 0.000095 |
ORF6 | 28 | N28M | aAT | aTG | 5 | 5 | All | 0.000001 |
ORF6 | 28 | N28X | AaT | TaA | 3 | 5 | All | 0.000001 |
ORF6 | 28 | N28X | AAT | TGA | 2 | 5 | All | 0 |
ORF6 | 28 | N28H | Aat | Cat | 5 | 5 | AY.25 | 0.00003 |
ORF6 | 28 | N28D | Aat | Gat | 5 | 5 | AY.3 | 0.00005 |
ORF6 | 28 | N28del | AAT | --- | 5 | 5 | AY.33 | 0.000334 |
ORF6 | 28 | N28del | AAT | --- | 5 | 5 | AY.34 | 0.000485 |
ORF6 | 28 | N28del | AAT | --- | 5 | 5 | AY.98 | 0.000395 |
ORF6 | 28 | N28del | AAT | --- | 5 | 5 | AY.98.1 | 0.000242 |
ORF6 | 28 | N28del | AAT | --- | 5 | 5 | B.1.1.222 | 0.00102 |
ORF6 | 28 | N28del | AAT | --- | 5 | 5 | B.1.1.318 | 0.001509 |
ORF6 | 28 | N28M | aAT | aTG | 5 | 5 | B.1.177.21 | 0.000382 |
ORF6 | 28 | N28del | AAT | --- | 5 | 5 | B.1.427 | 0.000252 |
ORF6 | 28 | N28del | AAT | --- | 5 | 5 | P.1.10 | 0.001347 |
ORF6 | 28 | N28del | AAT | --- | 5 | 5 | R.1 | 0.00045 |
ORF6 | 28 | N28del | AAT | --- | 4 | 4 | A | 0.001548 |
ORF6 | 28 | N28T | aAt | aCt | 3 | 4 | All | 0.000001 |
ORF6 | 28 | N28T | aAT | aCC | 1 | 4 | All | 0 |
ORF6 | 28 | N28del | AAT | --- | 4 | 4 | AU.2 | 0.009685 |
ORF6 | 28 | N28del | AAT | --- | 4 | 4 | AY.110 | 0.000451 |
ORF6 | 28 | N28N | aaT | aaC | 4 | 4 | AY.26 | 0.000113 |
ORF6 | 28 | N28D | Aat | Gat | 4 | 4 | AY.29 | 0.000063 |
ORF6 | 28 | N28N | aaT | aaC | 4 | 4 | AY.4.2 | 0.000087 |
ORF6 | 28 | N28del2 | AAt | --t | 4 | 4 | AY.5 | 0.000083 |
ORF6 | 28 | N28del | AAT | --- | 4 | 4 | AY.68 | 0.001095 |
ORF6 | 28 | N28del | AAT | --- | 4 | 4 | AY.9.1 | 0.000335 |
ORF6 | 28 | N28D | Aat | Gat | 4 | 4 | B.1 | 0.000037 |
ORF6 | 28 | N28del | AAT | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF6 | 28 | N28del1 | Aat | -at | 4 | 4 | B.1.1.7 | 0.000004 |
ORF6 | 28 | N28I | aAt | aTt | 3 | 4 | B.1.1.7 | 0.000003 |
ORF6 | 28 | N28I | aAT | aTA | 1 | 4 | B.1.1.7 | 0.000001 |
ORF6 | 28 | N28I | aAt | aTt | 4 | 4 | B.1.177.21 | 0.000306 |
ORF6 | 28 | N28N | aaT | aaC | 4 | 4 | B.1.2 | 0.000035 |
ORF6 | 28 | N28N | aaT | aaC | 4 | 4 | B.1.36.31 | 0.007005 |
ORF6 | 28 | N28del | AAT | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF6 | 28 | N28del | AAT | --- | 4 | 4 | P.1.17 | 0.000647 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | AY.12 | 0.000948 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | AY.2 | 0.001068 |
ORF6 | 28 | N28N | aaT | aaC | 3 | 3 | AY.3 | 0.00003 |
ORF6 | 28 | N28Y | Aat | Tat | 3 | 3 | AY.4 | 0.000005 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF6 | 28 | N28S | aAt | aGt | 3 | 3 | AY.44 | 0.000018 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | AY.46.6 | 0.000217 |
ORF6 | 28 | N28N | aaT | aaC | 3 | 3 | AY.47 | 0.000093 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | AY.71 | 0.001425 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | AY.9 | 0.000203 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | B | 0.000383 |
ORF6 | 28 | N28Y | Aat | Tat | 3 | 3 | B.1 | 0.000027 |
ORF6 | 28 | N28N | aaT | aaC | 3 | 3 | B.1.1 | 0.000054 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF6 | 28 | N28del2 | AAt | --t | 3 | 3 | B.1.1.7 | 0.000003 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | B.1.177.10 | 0.002634 |
ORF6 | 28 | N28X | AAT | TGA | 2 | 3 | B.1.177.21 | 0.000153 |
ORF6 | 28 | N28X | AaT | TaA | 1 | 3 | B.1.177.21 | 0.000076 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | B.1.214.2 | 0.001799 |
ORF6 | 28 | N28N | aaT | aaC | 3 | 3 | B.1.470 | 0.004213 |
ORF6 | 28 | N28H | Aat | Cat | 3 | 3 | B.1.596 | 0.000261 |
ORF6 | 28 | N28del2 | AAt | --t | 3 | 3 | B.1.617.2 | 0.000011 |
ORF6 | 28 | N28H | Aat | Cat | 2 | 3 | B.1.617.2 | 0.000008 |
ORF6 | 28 | N28H | AaT | CaC | 1 | 3 | B.1.617.2 | 0.000004 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | B.1.637 | 0.000219 |
ORF6 | 28 | N28del | AAT | --- | 3 | 3 | C.37 | 0.000348 |
ORF6 | 28 | N28N | aaT | aaC | 3 | 3 | C.37 | 0.000348 |
ORF6 | 28 | N28X | AaT | TaA | 2 | 2 | 0.111111 | |
ORF6 | 28 | N28K | aaT | aaA | 2 | 2 | 0.111111 | |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | 0.111111 | |
ORF6 | 28 | N28P | AAt | CCt | 2 | 2 | 0.111111 | |
ORF6 | 28 | N28P | AAt | CCt | 2 | 2 | All | 0 |
ORF6 | 28 | N28K | aaT | aaG | 2 | 2 | AY.103 | 0.000012 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | AY.113 | 0.000285 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | AY.121 | 0.000271 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.23 | 0.000139 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | AY.23 | 0.000139 |
ORF6 | 28 | N28del2 | AAt | --t | 2 | 2 | AY.25 | 0.000012 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.28 | 0.003781 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | AY.33 | 0.000134 |
ORF6 | 28 | N28H | Aat | Cat | 2 | 2 | AY.39 | 0.000049 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | AY.39.1 | 0.000079 |
ORF6 | 28 | N28del2 | aAT | a-- | 2 | 2 | AY.4 | 0.000003 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.40 | 0.001929 |
ORF6 | 28 | N28D | Aat | Gat | 2 | 2 | AY.43 | 0.000009 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | AY.5.4 | 0.000553 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.52 | 0.001629 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.53 | 0.000575 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.74 | 0.000231 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF6 | 28 | N28T | aAt | aCt | 1 | 2 | AY.85 | 0.000427 |
ORF6 | 28 | N28T | aAT | aCC | 1 | 2 | AY.85 | 0.000427 |
ORF6 | 28 | N28H | Aat | Cat | 2 | 2 | AY.9.2 | 0.000073 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | AY.9.2 | 0.000073 |
ORF6 | 28 | N28D | Aat | Gat | 2 | 2 | AY.9.2 | 0.000073 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | AY.99.2 | 0.000184 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | AY.99.2 | 0.000184 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | B | 0.000256 |
ORF6 | 28 | N28K | aaT | aaG | 2 | 2 | B.1 | 0.000018 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.1.231 | 0.006192 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.1.461 | 0.024096 |
ORF6 | 28 | N28H | Aat | Cat | 2 | 2 | B.1.177 | 0.000026 |
ORF6 | 28 | N28del1 | Aat | -at | 2 | 2 | B.1.177.21 | 0.000153 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.195 | 0.01005 |
ORF6 | 28 | N28H | Aat | Cat | 2 | 2 | B.1.2 | 0.000018 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.229 | 0.019417 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.332 | 0.006993 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF6 | 28 | N28N | aaT | aaC | 2 | 2 | B.1.36.27 | 0.001527 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.400 | 0.000858 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.438.1 | 0.000215 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.466.2 | 0.000782 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.524 | 0.002813 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.554 | 0.008811 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF6 | 28 | N28D | Aat | Gat | 2 | 2 | B.1.617.2 | 0.000008 |
ORF6 | 28 | N28I | aAT | aTC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF6 | 28 | N28I | aAt | aTt | 1 | 2 | B.1.617.2 | 0.000004 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | D.2 | 0.00015 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | P.3 | 0.00319 |
ORF6 | 28 | N28del | AAT | --- | 2 | 2 | Q.8 | 0.00033 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | A.1 | 0.000282 |
ORF6 | 28 | N28H | Aat | Cat | 1 | 1 | A.2 | 0.000662 |
ORF6 | 28 | N28G | AAT | GGA | 1 | 1 | All | 0 |
ORF6 | 28 | N28V | AAT | GTA | 1 | 1 | All | 0 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AP.1 | 0.001502 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AU.1 | 0.001266 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.100 | 0.000046 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.101 | 0.00049 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF6 | 28 | N28Y | Aat | Tat | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.106 | 0.000335 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.117 | 0.000085 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.119 | 0.000035 |
ORF6 | 28 | N28G | AAT | GGA | 1 | 1 | AY.119 | 0.000035 |
ORF6 | 28 | N28del2 | AAt | --t | 1 | 1 | AY.120 | 0.000037 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.120 | 0.000037 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.120.1 | 0.000321 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF6 | 28 | N28Y | Aat | Tat | 1 | 1 | AY.121 | 0.000135 |
ORF6 | 28 | N28H | Aat | Cat | 1 | 1 | AY.121 | 0.000135 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.16 | 0.00038 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.16.1 | 0.00047 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.25 | 0.000006 |
ORF6 | 28 | N28Y | Aat | Tat | 1 | 1 | AY.25 | 0.000006 |
ORF6 | 28 | N28T | aAt | aCt | 1 | 1 | AY.27 | 0.000065 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF6 | 28 | N28del1 | aaT | aa- | 1 | 1 | AY.3 | 0.00001 |
ORF6 | 28 | N28del2 | AAt | --t | 1 | 1 | AY.3 | 0.00001 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.30 | 0.000396 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.36 | 0.000148 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.37 | 0.000316 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 28 | N28del2 | AAt | --t | 1 | 1 | AY.39.1 | 0.00004 |
ORF6 | 28 | N28del1 | aaT | aa- | 1 | 1 | AY.4 | 0.000002 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.41 | 0.000294 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.42 | 0.00004 |
ORF6 | 28 | N28H | Aat | Cat | 1 | 1 | AY.43 | 0.000004 |
ORF6 | 28 | N28del1 | AAT | -NN | 1 | 1 | AY.43 | 0.000004 |
ORF6 | 28 | N28K | aaT | aaG | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 28 | N28Y | Aat | Tat | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.46.3 | 0.000934 |
ORF6 | 28 | N28Y | Aat | Tat | 1 | 1 | AY.46.6 | 0.000072 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.5 | 0.000021 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.57 | 0.000656 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.6 | 0.000041 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.6 | 0.000041 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.61 | 0.000105 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.63 | 0.000387 |
ORF6 | 28 | N28K | aaT | aaA | 1 | 1 | AY.7.1 | 0.000113 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.70 | 0.000209 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.72 | 0.001361 |
ORF6 | 28 | N28del2 | aAT | a-- | 1 | 1 | AY.73 | 0.000665 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.88 | 0.000884 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | AY.89 | 0.004902 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.97 | 0.001701 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | AY.98.1 | 0.000048 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF6 | 28 | N28del1 | Aat | -at | 1 | 1 | B | 0.000128 |
ORF6 | 28 | N28del2 | AAt | --t | 1 | 1 | B.1 | 0.000009 |
ORF6 | 28 | N28I | aAt | aTt | 1 | 1 | B.1 | 0.000009 |
ORF6 | 28 | N28K | aaT | aaA | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 28 | N28Y | Aat | Tat | 1 | 1 | B.1.1.214 | 0.000055 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.241 | 0.00207 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF6 | 28 | N28S | aAt | aGt | 1 | 1 | B.1.1.269 | 0.001353 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.307 | 0.002532 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.316 | 0.000925 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | B.1.1.322 | 0.008772 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.38 | 0.058824 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF6 | 28 | N28K | aaT | aaG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF6 | 28 | N28T | aAt | aCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 28 | N28V | AAT | GTA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.8 | 0.003584 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.1.83 | 0.00271 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.131 | 0.008772 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | B.1.157 | 0.002985 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | B.1.160.11 | 0.005714 |
ORF6 | 28 | N28K | aaT | aaA | 1 | 1 | B.1.170 | 0.00431 |
ORF6 | 28 | N28del2 | AAt | --t | 1 | 1 | B.1.177 | 0.000013 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF6 | 28 | N28S | AAt | TCt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF6 | 28 | N28del2 | aAT | a-- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF6 | 28 | N28K | aaT | aaA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | B.1.177.6 | 0.000977 |
ORF6 | 28 | N28S | aAt | aGt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | B.1.177.82 | 0.000477 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | B.1.2 | 0.000009 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.232 | 0.000537 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | B.1.234 | 0.000132 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.239 | 0.001221 |
ORF6 | 28 | N28del2 | AAt | --t | 1 | 1 | B.1.240 | 0.000216 |
ORF6 | 28 | N28E | AaT | GaA | 1 | 1 | B.1.258.11 | 0.000396 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.260 | 0.003344 |
ORF6 | 28 | N28H | Aat | Cat | 1 | 1 | B.1.265 | 0.001271 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | B.1.319 | 0.003049 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.36.24 | 0.006173 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF6 | 28 | N28I | aAt | aTt | 1 | 1 | B.1.367 | 0.000792 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.391 | 0.001127 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.396 | 0.000706 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.398 | 0.002976 |
ORF6 | 28 | N28Y | Aat | Tat | 1 | 1 | B.1.416 | 0.001269 |
ORF6 | 28 | N28K | aaT | aaA | 1 | 1 | B.1.427 | 0.00005 |
ORF6 | 28 | N28Y | Aat | Tat | 1 | 1 | B.1.427 | 0.00005 |
ORF6 | 28 | N28H | Aat | Cat | 1 | 1 | B.1.429 | 0.000024 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.429.1 | 0.012048 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.462 | 0.007246 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.469 | 0.00361 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | B.1.526 | 0.000024 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.565 | 0.00081 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | B.1.637 | 0.000073 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.1.9.3 | 0.038462 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | B.31 | 0.003731 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | C.2.1 | 0.006667 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | C.36 | 0.000911 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | C.36.3.1 | 0.002717 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | N.10 | 0.029412 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | P.1 | 0.000016 |
ORF6 | 28 | N28Y | Aat | Tat | 1 | 1 | P.1 | 0.000016 |
ORF6 | 28 | N28I | aAt | aTt | 1 | 1 | P.1.1 | 0.000318 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF6 | 28 | N28del1 | Aat | -at | 1 | 1 | P.1.12 | 0.000484 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF6 | 28 | N28del2 | AAt | --t | 1 | 1 | P.3 | 0.001595 |
ORF6 | 28 | N28del | AAT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF6 | 28 | N28N | aaT | aaC | 1 | 1 | Q.3 | 0.000145 |
ORF6 | 28 | N28D | Aat | Gat | 1 | 1 | Q.3 | 0.000145 |
ORF6 | 28 | N28K | aaT | aaA | 1 | 1 | Q.4 | 0.000455 |
ORF6 | 28 | N28H | Aat | Cat | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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