CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF6 : CodonNum = 27

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF6	27	W27L		nonsyn	tGg	tTg	6047	6046	0.999835	27280-27282
ORF6	27	W27L		nonsyn	tGG	tTA	6047	1	0.000165371	27280-27282
ORF6	27	W27del		del	TGG	---	2842	2842	1	27280-27282
ORF6	27	W27R		nonsyn	Tgg	Cgg	418	323	0.772727	27280-27282
ORF6	27	W27R		nonsyn	Tgg	Agg	418	93	0.222488	27280-27282
ORF6	27	W27R		nonsyn	TgG	CgT	418	2	0.00478469	27280-27282
ORF6	27	W27X		nonsyn	tGg	tAg	196	104	0.530612	27280-27282
ORF6	27	W27X		nonsyn	tgG	tgA	196	85	0.433673	27280-27282
ORF6	27	W27X		nonsyn	tGG	tAA	196	7	0.0357143	27280-27282
ORF6	27	W27C		nonsyn	tgG	tgT	138	132	0.956522	27280-27282
ORF6	27	W27C		nonsyn	tgG	tgC	138	6	0.0434783	27280-27282
ORF6	27	W27G		nonsyn	Tgg	Ggg	61	58	0.95082	27280-27282
ORF6	27	W27G		nonsyn	TgG	GgA	61	2	0.0327869	27280-27282
ORF6	27	W27G		nonsyn	TgG	GgT	61	1	0.0163934	27280-27282
ORF6	27	W27S		nonsyn	tGg	tCg	20	19	0.95	27280-27282
ORF6	27	W27S		nonsyn	TgG	AgT	20	1	0.05	27280-27282
ORF6	27	W27del2		del	tGG	t--	13	9	0.692308	27280-27282
ORF6	27	W27del2		del	TGg	--g	13	4	0.307692	27280-27282
ORF6	27	W27del1		del	tGg	t-g	8	6	0.75	27280-27282
ORF6	27	W27del1		del	tgG	tg-	8	2	0.25	27280-27282
ORF6	27	W27F		nonsyn	tGG	tTT	6	5	0.833333	27280-27282
ORF6	27	W27F		nonsyn	tGG	tTC	6	1	0.166667	27280-27282
ORF6	27	W27Y		nonsyn	tGG	tAT	3	3	1	27280-27282
ORF6	27	W27T		nonsyn	TGg	ACg	2	2	1	27280-27282
ORF6	27	W27D		nonsyn	TGG	GAT	1	1	1	27280-27282
ORF6	27	W27E		nonsyn	TGg	GAg	1	1	1	27280-27282
ORF6	27	W27H		nonsyn	TGG	CAT	1	1	1	27280-27282
ORF6	27	W27Q		nonsyn	TGg	CAg	1	1	1	27280-27282

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF6	27	W27L	tGg	tTg	6046	6047	All	0.001156
ORF6	27	W27L	tGG	tTA	1	6047	All	0
ORF6	27	W27del	TGG	---	2842	2842	All	0.000544
ORF6	27	W27L	tGg	tTg	1423	1423	B.1.1.7	0.001274
ORF6	27	W27L	tGg	tTg	687	687	B.1.617.2	0.002587
ORF6	27	W27del	TGG	---	632	632	AY.4	0.000984
ORF6	27	W27L	tGg	tTg	540	540	AY.4	0.00084
ORF6	27	W27R	Tgg	Cgg	323	418	All	0.000062
ORF6	27	W27R	Tgg	Agg	93	418	All	0.000018
ORF6	27	W27R	TgG	CgT	2	418	All	0
ORF6	27	W27del	TGG	---	362	362	B.1.1.7	0.000324
ORF6	27	W27X	tGg	tAg	104	196	All	0.00002
ORF6	27	W27X	tgG	tgA	85	196	All	0.000016
ORF6	27	W27X	tGG	tAA	7	196	All	0.000001
ORF6	27	W27L	tGg	tTg	181	181	B.1.2	0.001594
ORF6	27	W27L	tGg	tTg	174	174	AY.29	0.002745
ORF6	27	W27L	tGg	tTg	172	172	AY.5	0.003552
ORF6	27	W27R	Tgg	Cgg	166	166	AY.42	0.006678
ORF6	27	W27L	tGg	tTg	165	165	B.1.1.89	1
ORF6	27	W27L	tGg	tTg	149	149	AY.43	0.00066
ORF6	27	W27L	tGg	tTg	139	139	AY.99.1	0.215839
ORF6	27	W27C	tgG	tgT	132	138	All	0.000025
ORF6	27	W27C	tgG	tgC	6	138	All	0.000001
ORF6	27	W27L	tGg	tTg	124	124	AY.44	0.000755
ORF6	27	W27del	TGG	---	112	112	B.1.617.2	0.000422
ORF6	27	W27L	tGg	tTg	110	110	AY.102	0.002917
ORF6	27	W27del	TGG	---	109	109	AY.43	0.000483
ORF6	27	W27del	TGG	---	106	106	AY.44	0.000645
ORF6	27	W27L	tGg	tTg	105	105	AY.25	0.000632
ORF6	27	W27L	tGg	tTg	103	103	AY.103	0.00064
ORF6	27	W27del	TGG	---	96	96	AY.4.2	0.002082
ORF6	27	W27L	tGg	tTg	95	95	P.1	0.001497
ORF6	27	W27del	TGG	---	92	92	AY.25	0.000553
ORF6	27	W27R	Tgg	Cgg	78	78	B.1.2	0.000687
ORF6	27	W27L	tGg	tTg	76	76	B.1.1	0.001379
ORF6	27	W27L	tGg	tTg	74	74	B.1.1.434	0.025793
ORF6	27	W27L	tGg	tTg	73	73	B.1	0.000669
ORF6	27	W27R	Tgg	Agg	71	72	AY.4	0.000111
ORF6	27	W27R	Tgg	Cgg	1	72	AY.4	0.000002
ORF6	27	W27del	TGG	---	63	63	B.1	0.000577
ORF6	27	W27del	TGG	---	62	62	AY.103	0.000385
ORF6	27	W27G	Tgg	Ggg	58	61	All	0.000011
ORF6	27	W27G	TgG	GgA	2	61	All	0
ORF6	27	W27G	TgG	GgT	1	61	All	0
ORF6	27	W27del	TGG	---	60	60	AY.3	0.000597
ORF6	27	W27del	TGG	---	59	59	AY.47	0.001835
ORF6	27	W27del	TGG	---	57	57	AY.120	0.002119
ORF6	27	W27L	tGg	tTg	55	55	AY.3	0.000547
ORF6	27	W27L	tGg	tTg	53	53	AY.9	0.003583
ORF6	27	W27L	tGg	tTg	52	52	B.1.438.2	1
ORF6	27	W27L	tGg	tTg	51	51	AY.20	0.001982
ORF6	27	W27L	tGg	tTg	51	51	B.1.177	0.000672
ORF6	27	W27del	TGG	---	49	49	B.1.2	0.000431
ORF6	27	W27L	tGg	tTg	47	47	AY.33	0.003139
ORF6	27	W27L	tGg	tTg	44	44	AY.4.2	0.000954
ORF6	27	W27L	tGg	tTg	44	44	B.1.177.83	0.065185
ORF6	27	W27C	tgG	tgT	42	43	B.1.1.7	0.000038
ORF6	27	W27C	tgG	tgC	1	43	B.1.1.7	0.000001
ORF6	27	W27del	TGG	---	41	41	B.1.616	1
ORF6	27	W27del	TGG	---	40	40	P.1	0.00063
ORF6	27	W27L	tGg	tTg	40	40	P.2	0.007465
ORF6	27	W27L	tGg	tTg	39	39	AY.14	0.003432
ORF6	27	W27del	TGG	---	37	37	AY.39	0.000914
ORF6	27	W27G	Tgg	Ggg	36	36	B.1.422	0.029245
ORF6	27	W27del	TGG	---	32	32	N.8	1
ORF6	27	W27L	tGg	tTg	29	29	AY.39	0.000717
ORF6	27	W27del	TGG	---	29	29	AY.5	0.000599
ORF6	27	W27L	tGg	tTg	29	29	B.1.429	0.000682
ORF6	27	W27X	tGg	tAg	24	29	B.1.617.2	0.00009
ORF6	27	W27X	tgG	tgA	5	29	B.1.617.2	0.000019
ORF6	27	W27del	TGG	---	25	25	B.1.526	0.000588
ORF6	27	W27L	tGg	tTg	24	24	AY.26	0.000679
ORF6	27	W27del	TGG	---	24	24	AY.26	0.000679
ORF6	27	W27L	tGg	tTg	24	24	AY.34	0.002327
ORF6	27	W27L	tGg	tTg	23	24	B.1.177.21	0.001759
ORF6	27	W27L	tGG	tTA	1	24	B.1.177.21	0.000076
ORF6	27	W27del	TGG	---	23	23	AY.111	0.004212
ORF6	27	W27L	tGg	tTg	23	23	AY.46.6	0.001661
ORF6	27	W27L	tGg	tTg	23	23	C.36	0.020947
ORF6	27	W27L	tGg	tTg	22	22	B.1.177.56	0.014686
ORF6	27	W27L	tGg	tTg	22	22	B.1.221	0.001563
ORF6	27	W27del	TGG	---	21	21	AY.6	0.000864
ORF6	27	W27del	TGG	---	21	21	AY.84	0.009186
ORF6	27	W27S	tGg	tCg	19	20	All	0.000004
ORF6	27	W27S	TgG	AgT	1	20	All	0
ORF6	27	W27del	TGG	---	20	20	B.1.108	0.116279
ORF6	27	W27L	tGg	tTg	19	19	AY.61	0.001991
ORF6	27	W27X	tgG	tgA	11	19	B.1.1.7	0.00001
ORF6	27	W27X	tGg	tAg	6	19	B.1.1.7	0.000005
ORF6	27	W27X	tGG	tAA	2	19	B.1.1.7	0.000002
ORF6	27	W27L	tGg	tTg	18	18	AY.119	0.000636
ORF6	27	W27L	tGg	tTg	18	18	AY.64	0.010714
ORF6	27	W27L	tGg	tTg	17	17	AY.120	0.000632
ORF6	27	W27del	TGG	---	17	17	AY.13	0.002737
ORF6	27	W27del	TGG	---	17	17	AY.75	0.000952
ORF6	27	W27L	tGg	tTg	17	17	B.1.1.63	0.006559
ORF6	27	W27del	TGG	---	17	17	B.1.177.21	0.0013
ORF6	27	W27L	tGg	tTg	17	17	B.1.628	0.00599
ORF6	27	W27L	tGg	tTg	16	16	AY.117	0.001352
ORF6	27	W27del	TGG	---	16	16	AY.118	0.001002
ORF6	27	W27L	tGg	tTg	16	16	B.1.551	0.020645
ORF6	27	W27del	TGG	---	15	15	AY.36	0.002223
ORF6	27	W27del	TGG	---	15	15	AY.42	0.000603
ORF6	27	W27L	tGg	tTg	15	15	B.1.36	0.002189
ORF6	27	W27del	TGG	---	14	14	AY.54	0.001335
ORF6	27	W27L	tGg	tTg	14	14	B.1.177.52	0.024605
ORF6	27	W27L	tGg	tTg	14	14	B.6.6	0.012444
ORF6	27	W27del2	tGG	t--	9	13	All	0.000002
ORF6	27	W27del2	TGg	--g	4	13	All	0.000001
ORF6	27	W27del	TGG	---	13	13	AY.119	0.000459
ORF6	27	W27del	TGG	---	13	13	AY.29	0.000205
ORF6	27	W27L	tGg	tTg	13	13	AY.3.1	0.001108
ORF6	27	W27L	tGg	tTg	13	13	AY.6	0.000535
ORF6	27	W27L	tGg	tTg	13	13	AY.74	0.001503
ORF6	27	W27del	TGG	---	13	13	AY.90	0.008898
ORF6	27	W27L	tGg	tTg	13	13	AY.98.1	0.00063
ORF6	27	W27del	TGG	---	13	13	B.1.105	0.125
ORF6	27	W27L	tGg	tTg	13	13	B.1.351	0.000386
ORF6	27	W27L	tGg	tTg	13	13	B.1.36.22	0.0157
ORF6	27	W27del	TGG	---	13	13	B.1.429	0.000306
ORF6	27	W27L	tGg	tTg	13	13	B.1.595	0.003392
ORF6	27	W27del	TGG	---	12	12	AY.20	0.000466
ORF6	27	W27del	TGG	---	12	12	AY.85	0.005126
ORF6	27	W27L	tGg	tTg	12	12	B.1.1.519	0.000477
ORF6	27	W27L	tGg	tTg	12	12	B.1.177.81	0.002272
ORF6	27	W27del	TGG	---	12	12	B.1.36.36	0.007225
ORF6	27	W27L	tGg	tTg	12	12	B.1.621	0.001062
ORF6	27	W27L	tGg	tTg	11	11	AY.111	0.002015
ORF6	27	W27del	TGG	---	11	11	AY.113	0.001566
ORF6	27	W27del	TGG	---	11	11	AY.39.1	0.000436
ORF6	27	W27X	tGg	tAg	7	11	AY.4	0.000011
ORF6	27	W27X	tgG	tgA	4	11	AY.4	0.000006
ORF6	27	W27L	tGg	tTg	11	11	AY.47	0.000342
ORF6	27	W27del	TGG	---	11	11	AY.9.2	0.000404
ORF6	27	W27L	tGg	tTg	11	11	B.1.232	0.005911
ORF6	27	W27L	tGg	tTg	11	11	B.1.526	0.000259
ORF6	27	W27L	tGg	tTg	11	11	Q.8	0.001814
ORF6	27	W27L	tGg	tTg	10	10	AY.100	0.00046
ORF6	27	W27del	TGG	---	10	10	AY.100	0.00046
ORF6	27	W27del	TGG	---	10	10	AY.14	0.00088
ORF6	27	W27L	tGg	tTg	10	10	AY.40	0.009643
ORF6	27	W27X	tGg	tAg	5	10	AY.44	0.00003
ORF6	27	W27X	tgG	tgA	4	10	AY.44	0.000024
ORF6	27	W27X	tGG	tAA	1	10	AY.44	0.000006
ORF6	27	W27del	TGG	---	10	10	AY.45	0.001217
ORF6	27	W27del	TGG	---	10	10	AY.46	0.001041
ORF6	27	W27C	tgG	tgT	10	10	B.1.1.214	0.000555
ORF6	27	W27L	tGg	tTg	10	10	B.1.1.306	0.004384
ORF6	27	W27L	tGg	tTg	10	10	D.2	0.00075
ORF6	27	W27del	TGG	---	9	9	AY.106	0.003014
ORF6	27	W27L	tGg	tTg	9	9	AY.13	0.001449
ORF6	27	W27R	Tgg	Cgg	5	9	AY.20	0.000194
ORF6	27	W27R	Tgg	Agg	4	9	AY.20	0.000155
ORF6	27	W27R	Tgg	Cgg	9	9	AY.4.2	0.000195
ORF6	27	W27del	TGG	---	9	9	AY.4.2.1	0.001341
ORF6	27	W27L	tGg	tTg	9	9	AY.75	0.000504
ORF6	27	W27del	TGG	---	9	9	B.1.177	0.000119
ORF6	27	W27X	tGg	tAg	8	9	B.1.177.21	0.000612
ORF6	27	W27X	tgG	tgA	1	9	B.1.177.21	0.000076
ORF6	27	W27L	tGg	tTg	9	9	B.1.177.44	0.00467
ORF6	27	W27del	TGG	---	9	9	B.1.240	0.00194
ORF6	27	W27del1	tGg	t-g	6	8	All	0.000001
ORF6	27	W27del1	tgG	tg-	2	8	All	0
ORF6	27	W27X	tGg	tAg	7	8	AY.100	0.000322
ORF6	27	W27X	tgG	tgA	1	8	AY.100	0.000046
ORF6	27	W27del	TGG	---	8	8	AY.102	0.000212
ORF6	27	W27R	Tgg	Cgg	8	8	AY.103	0.00005
ORF6	27	W27L	tGg	tTg	8	8	AY.23	0.000558
ORF6	27	W27L	tGg	tTg	8	8	AY.39.1	0.000317
ORF6	27	W27L	tGg	tTg	8	8	AY.46	0.000833
ORF6	27	W27del	TGG	---	8	8	AY.46.5	0.001587
ORF6	27	W27L	tGg	tTg	8	8	AY.5.4	0.002214
ORF6	27	W27L	tGg	tTg	8	8	AY.65	0.004264
ORF6	27	W27L	tGg	tTg	8	8	AY.9.2	0.000294
ORF6	27	W27X	tGg	tAg	5	8	B.1	0.000046
ORF6	27	W27X	tgG	tgA	3	8	B.1	0.000027
ORF6	27	W27R	Tgg	Cgg	5	8	B.1.1.7	0.000004
ORF6	27	W27R	Tgg	Agg	3	8	B.1.1.7	0.000003
ORF6	27	W27L	tGg	tTg	8	8	B.1.243	0.000557
ORF6	27	W27del	TGG	---	8	8	B.1.351	0.000238
ORF6	27	W27L	tGg	tTg	8	8	C.37	0.000929
ORF6	27	W27L	tGg	tTg	8	8	P.1.7	0.002554
ORF6	27	W27C	tgG	tgT	7	7	AY.103	0.000043
ORF6	27	W27S	tGg	tCg	7	7	AY.103	0.000043
ORF6	27	W27L	tGg	tTg	7	7	AY.121	0.000947
ORF6	27	W27X	tgG	tgA	6	7	AY.26	0.00017
ORF6	27	W27X	tGg	tAg	1	7	AY.26	0.000028
ORF6	27	W27L	tGg	tTg	7	7	AY.45	0.000852
ORF6	27	W27L	tGg	tTg	7	7	AY.5.3	0.002362
ORF6	27	W27L	tGg	tTg	7	7	AY.54	0.000667
ORF6	27	W27L	tGg	tTg	7	7	AY.59	0.003708
ORF6	27	W27del	TGG	---	7	7	AY.61	0.000733
ORF6	27	W27del	TGG	---	7	7	B.1.1	0.000127
ORF6	27	W27del	TGG	---	7	7	B.1.234	0.000924
ORF6	27	W27del	TGG	---	7	7	B.1.351.2	0.002118
ORF6	27	W27L	tGg	tTg	7	7	B.1.427	0.000353
ORF6	27	W27L	tGg	tTg	7	7	B.1.438.1	0.000751
ORF6	27	W27L	tGg	tTg	7	7	B.1.596	0.00061
ORF6	27	W27del	TGG	---	7	7	B.1.621	0.00062
ORF6	27	W27C	tgG	tgT	7	7	B.1.628	0.002467
ORF6	27	W27X	tgG	tgA	7	7	D.2	0.000525
ORF6	27	W27L	tGg	tTg	7	7	P.1.14	0.000335
ORF6	27	W27L	tGg	tTg	7	7	P.1.17	0.001132
ORF6	27	W27F	tGG	tTT	5	6	All	0.000001
ORF6	27	W27F	tGG	tTC	1	6	All	0
ORF6	27	W27G	Tgg	Ggg	6	6	AY.105	0.003859
ORF6	27	W27L	tGg	tTg	6	6	AY.113	0.000854
ORF6	27	W27L	tGg	tTg	6	6	AY.114	0.001387
ORF6	27	W27C	tgG	tgT	6	6	AY.25	0.000036
ORF6	27	W27del	TGG	---	6	6	AY.27	0.000388
ORF6	27	W27del	TGG	---	6	6	AY.3.1	0.000512
ORF6	27	W27R	Tgg	Cgg	5	6	AY.44	0.00003
ORF6	27	W27R	Tgg	Agg	1	6	AY.44	0.000006
ORF6	27	W27X	tGg	tAg	6	6	AY.46.4	0.000987
ORF6	27	W27L	tGg	tTg	6	6	AY.67	0.002786
ORF6	27	W27L	tGg	tTg	6	6	AY.84	0.002625
ORF6	27	W27L	tGg	tTg	6	6	B.1.1.214	0.000333
ORF6	27	W27del	TGG	---	6	6	B.1.1.214	0.000333
ORF6	27	W27L	tGg	tTg	6	6	B.1.1.222	0.001224
ORF6	27	W27L	tGg	tTg	6	6	B.1.1.420	0.006036
ORF6	27	W27del2	tGG	t--	5	6	B.1.1.7	0.000004
ORF6	27	W27del2	TGg	--g	1	6	B.1.1.7	0.000001
ORF6	27	W27L	tGg	tTg	6	6	B.1.177.9	0.007989
ORF6	27	W27del	TGG	---	6	6	B.1.258	0.000399
ORF6	27	W27del	TGG	---	6	6	B.1.311	0.001647
ORF6	27	W27L	tGg	tTg	6	6	B.1.369	0.001711
ORF6	27	W27L	tGg	tTg	6	6	B.1.617.1	0.000774
ORF6	27	W27C	tgG	tgT	6	6	B.1.617.2	0.000023
ORF6	27	W27R	Tgg	Cgg	6	6	B.1.617.2	0.000023
ORF6	27	W27X	tGG	tAA	2	5		0.111111
ORF6	27	W27X	tgG	tgA	2	5		0.111111
ORF6	27	W27X	tGg	tAg	1	5		0.055556
ORF6	27	W27X	tGg	tAg	3	5	AY.103	0.000019
ORF6	27	W27X	tgG	tgA	2	5	AY.103	0.000012
ORF6	27	W27L	tGg	tTg	5	5	AY.109	0.003698
ORF6	27	W27L	tGg	tTg	5	5	AY.16.1	0.00235
ORF6	27	W27X	tgG	tgA	4	5	AY.25	0.000024
ORF6	27	W27X	tGg	tAg	1	5	AY.25	0.000006
ORF6	27	W27del	TGG	---	5	5	AY.33	0.000334
ORF6	27	W27del	TGG	---	5	5	AY.34	0.000485
ORF6	27	W27C	tgG	tgT	5	5	AY.4	0.000008
ORF6	27	W27C	tgG	tgT	5	5	AY.43	0.000022
ORF6	27	W27L	tGg	tTg	5	5	AY.46.4	0.000823
ORF6	27	W27L	tGg	tTg	5	5	AY.55	0.004587
ORF6	27	W27del	TGG	---	5	5	AY.98	0.000395
ORF6	27	W27del	TGG	---	5	5	AY.98.1	0.000242
ORF6	27	W27del	TGG	---	5	5	B.1.1.222	0.00102
ORF6	27	W27L	tGg	tTg	5	5	B.1.1.28	0.001556
ORF6	27	W27del	TGG	---	5	5	B.1.1.318	0.001509
ORF6	27	W27L	tGg	tTg	5	5	B.1.1.50	0.003394
ORF6	27	W27L	tGg	tTg	5	5	B.1.160	0.000156
ORF6	27	W27L	tGg	tTg	5	5	B.1.237	0.024876
ORF6	27	W27L	tGg	tTg	5	5	B.1.241	0.004058
ORF6	27	W27del	TGG	---	5	5	B.1.427	0.000252
ORF6	27	W27L	tGg	tTg	5	5	B.1.564	0.002129
ORF6	27	W27R	Tgg	Cgg	5	5	B.1.621	0.000443
ORF6	27	W27del	TGG	---	5	5	P.1.10	0.001347
ORF6	27	W27del	TGG	---	5	5	R.1	0.00045
ORF6	27	W27del	TGG	---	4	4	A	0.001548
ORF6	27	W27L	tGg	tTg	4	4	A.2.5	0.001996
ORF6	27	W27C	tgG	tgT	4	4	AD.2	0.000876
ORF6	27	W27del	TGG	---	4	4	AU.2	0.009685
ORF6	27	W27X	tgG	tgA	2	4	AY.102	0.000053
ORF6	27	W27X	tGg	tAg	2	4	AY.102	0.000053
ORF6	27	W27L	tGg	tTg	4	4	AY.107	0.001864
ORF6	27	W27del	TGG	---	4	4	AY.110	0.000451
ORF6	27	W27L	tGg	tTg	4	4	AY.29.1	0.000882
ORF6	27	W27L	tGg	tTg	4	4	AY.38	0.001997
ORF6	27	W27X	tgG	tgA	3	4	AY.43	0.000013
ORF6	27	W27X	tGg	tAg	1	4	AY.43	0.000004
ORF6	27	W27C	tgG	tgT	4	4	AY.44	0.000024
ORF6	27	W27X	tGg	tAg	4	4	AY.45	0.000487
ORF6	27	W27del	TGG	---	4	4	AY.68	0.001095
ORF6	27	W27L	tGg	tTg	4	4	AY.9.1	0.000335
ORF6	27	W27del	TGG	---	4	4	AY.9.1	0.000335
ORF6	27	W27L	tGg	tTg	4	4	AY.98	0.000316
ORF6	27	W27L	tGg	tTg	4	4	B.1.1.1	0.001307
ORF6	27	W27del	TGG	---	4	4	B.1.1.519	0.000159
ORF6	27	W27L	tGg	tTg	4	4	B.1.258	0.000266
ORF6	27	W27L	tGg	tTg	4	4	B.1.466.2	0.001565
ORF6	27	W27del	TGG	---	4	4	B.1.525	0.000453
ORF6	27	W27L	tGg	tTg	4	4	B.1.525	0.000453
ORF6	27	W27del	TGG	---	4	4	P.1.17	0.000647
ORF6	27	W27R	Tgg	Cgg	1	3		0.055556
ORF6	27	W27R	TgG	CgT	1	3		0.055556
ORF6	27	W27R	Tgg	Agg	1	3		0.055556
ORF6	27	W27Y	tGG	tAT	3	3	All	0.000001
ORF6	27	W27L	tGg	tTg	3	3	AY.116	0.00086
ORF6	27	W27L	tGg	tTg	3	3	AY.116.1	0.000934
ORF6	27	W27del	TGG	---	3	3	AY.12	0.000948
ORF6	27	W27L	tGg	tTg	3	3	AY.120.2.1	0.001495
ORF6	27	W27del	TGG	---	3	3	AY.2	0.001068
ORF6	27	W27X	tGg	tAg	2	3	AY.20	0.000078
ORF6	27	W27X	tgG	tgA	1	3	AY.20	0.000039
ORF6	27	W27L	tGg	tTg	3	3	AY.24	0.001293
ORF6	27	W27R	Tgg	Cgg	2	3	AY.29	0.000032
ORF6	27	W27X	tgG	tgA	2	3	AY.29	0.000032
ORF6	27	W27X	tGg	tAg	1	3	AY.29	0.000016
ORF6	27	W27R	Tgg	Agg	1	3	AY.29	0.000016
ORF6	27	W27X	tgG	tgA	3	3	AY.3	0.00003
ORF6	27	W27R	Tgg	Cgg	3	3	AY.39	0.000074
ORF6	27	W27X	tGg	tAg	3	3	AY.4.2	0.000065
ORF6	27	W27del	TGG	---	3	3	AY.4.5	0.000322
ORF6	27	W27L	tGg	tTg	3	3	AY.42	0.000121
ORF6	27	W27X	tgG	tgA	2	3	AY.42	0.00008
ORF6	27	W27X	tGg	tAg	1	3	AY.42	0.00004
ORF6	27	W27del	TGG	---	3	3	AY.46.6	0.000217
ORF6	27	W27L	tGg	tTg	3	3	AY.51	0.002727
ORF6	27	W27del	TGG	---	3	3	AY.71	0.001425
ORF6	27	W27del	TGG	---	3	3	AY.9	0.000203
ORF6	27	W27L	tGg	tTg	3	3	AY.91	0.002191
ORF6	27	W27L	tGg	tTg	3	3	AY.94	0.001328
ORF6	27	W27L	tGg	tTg	3	3	AY.96	0.006224
ORF6	27	W27L	tGg	tTg	3	3	AZ.3	0.004559
ORF6	27	W27del	TGG	---	3	3	B	0.000383
ORF6	27	W27R	Tgg	Cgg	3	3	B.1	0.000027
ORF6	27	W27L	tGg	tTg	3	3	B.1.1.291	0.002227
ORF6	27	W27del	TGG	---	3	3	B.1.1.33	0.001263
ORF6	27	W27del	TGG	---	3	3	B.1.177.10	0.002634
ORF6	27	W27C	tgG	tgC	2	3	B.1.177.21	0.000153
ORF6	27	W27C	tgG	tgT	1	3	B.1.177.21	0.000076
ORF6	27	W27L	tGg	tTg	3	3	B.1.177.4	0.000633
ORF6	27	W27L	tGg	tTg	3	3	B.1.177.54	0.001819
ORF6	27	W27L	tGg	tTg	3	3	B.1.177.87	0.002183
ORF6	27	W27X	tgG	tgA	2	3	B.1.2	0.000018
ORF6	27	W27X	tGg	tAg	1	3	B.1.2	0.000009
ORF6	27	W27del	TGG	---	3	3	B.1.214.2	0.001799
ORF6	27	W27X	tgG	tgA	3	3	B.1.222	0.005076
ORF6	27	W27L	tGg	tTg	3	3	B.1.240	0.000647
ORF6	27	W27L	tGg	tTg	3	3	B.1.3	0.007853
ORF6	27	W27L	tGg	tTg	3	3	B.1.36.29	0.001552
ORF6	27	W27L	tGg	tTg	3	3	B.1.405	0.037037
ORF6	27	W27X	tGg	tAg	3	3	B.1.409	0.002344
ORF6	27	W27L	tGg	tTg	3	3	B.1.565	0.002431
ORF6	27	W27S	tGg	tCg	3	3	B.1.617.2	0.000011
ORF6	27	W27G	Tgg	Ggg	3	3	B.1.621	0.000266
ORF6	27	W27del	TGG	---	3	3	B.1.637	0.000219
ORF6	27	W27L	tGg	tTg	3	3	C.36.3	0.001702
ORF6	27	W27del	TGG	---	3	3	C.37	0.000348
ORF6	27	W27L	tGg	tTg	3	3	P.1.9	0.014423
ORF6	27	W27del	TGG	---	3	3	P.3	0.004785
ORF6	27	W27L	tGg	tTg	3	3	R.1	0.00027
ORF6	27	W27F	tGG	tTT	2	2		0.111111
ORF6	27	W27T	TGg	ACg	2	2		0.111111
ORF6	27	W27G	TgG	GgT	1	2		0.055556
ORF6	27	W27G	Tgg	Ggg	1	2		0.055556
ORF6	27	W27T	TGg	ACg	2	2	All	0
ORF6	27	W27L	tGg	tTg	2	2	AS.2	0.03125
ORF6	27	W27C	tgG	tgT	2	2	AY.102	0.000053
ORF6	27	W27L	tGg	tTg	2	2	AY.118	0.000125
ORF6	27	W27L	tGg	tTg	2	2	AY.12	0.000632
ORF6	27	W27del	TGG	---	2	2	AY.120.2	0.002571
ORF6	27	W27L	tGg	tTg	2	2	AY.16	0.000759
ORF6	27	W27del	TGG	---	2	2	AY.23	0.000139
ORF6	27	W27R	Tgg	Cgg	2	2	AY.25	0.000012
ORF6	27	W27R	Tgg	Cgg	1	2	AY.26	0.000028
ORF6	27	W27R	Tgg	Agg	1	2	AY.26	0.000028
ORF6	27	W27L	tGg	tTg	2	2	AY.27	0.000129
ORF6	27	W27del	TGG	---	2	2	AY.28	0.003781
ORF6	27	W27R	Tgg	Cgg	2	2	AY.3	0.00002
ORF6	27	W27C	tgG	tgT	2	2	AY.33	0.000134
ORF6	27	W27L	tGg	tTg	2	2	AY.35	0.000466
ORF6	27	W27X	tgG	tgA	1	2	AY.39	0.000025
ORF6	27	W27X	tGg	tAg	1	2	AY.39	0.000025
ORF6	27	W27L	tGg	tTg	2	2	AY.4.2.1	0.000298
ORF6	27	W27L	tGg	tTg	2	2	AY.4.4	0.000818
ORF6	27	W27L	tGg	tTg	2	2	AY.4.5	0.000215
ORF6	27	W27del	TGG	---	2	2	AY.40	0.001929
ORF6	27	W27S	tGg	tCg	2	2	AY.43	0.000009
ORF6	27	W27G	Tgg	Ggg	2	2	AY.44	0.000012
ORF6	27	W27del	TGG	---	2	2	AY.46.2	0.001271
ORF6	27	W27L	tGg	tTg	2	2	AY.46.3	0.001867
ORF6	27	W27L	tGg	tTg	2	2	AY.49	0.00639
ORF6	27	W27R	Tgg	Cgg	2	2	AY.5	0.000041
ORF6	27	W27del	TGG	---	2	2	AY.52	0.001629
ORF6	27	W27del	TGG	---	2	2	AY.53	0.000575
ORF6	27	W27R	Tgg	Cgg	2	2	AY.61	0.00021
ORF6	27	W27L	tGg	tTg	2	2	AY.66	0.002139
ORF6	27	W27L	tGg	tTg	2	2	AY.68	0.000547
ORF6	27	W27L	tGg	tTg	2	2	AY.69	0.000373
ORF6	27	W27X	tGG	tAA	1	2	AY.7.1	0.000113
ORF6	27	W27X	tgG	tgA	1	2	AY.7.1	0.000113
ORF6	27	W27L	tGg	tTg	2	2	AY.71	0.00095
ORF6	27	W27L	tGg	tTg	2	2	AY.72	0.002721
ORF6	27	W27L	tGg	tTg	2	2	AY.73	0.001331
ORF6	27	W27del	TGG	---	2	2	AY.74	0.000231
ORF6	27	W27del	TGG	---	2	2	AY.75.1	0.000361
ORF6	27	W27L	tGg	tTg	2	2	AY.85	0.000854
ORF6	27	W27X	tGg	tAg	2	2	AY.9.2	0.000073
ORF6	27	W27L	tGg	tTg	2	2	AY.90	0.001369
ORF6	27	W27L	tGg	tTg	2	2	AY.99.2	0.000184
ORF6	27	W27del	TGG	---	2	2	AY.99.2	0.000184
ORF6	27	W27R	Tgg	Cgg	1	2	AY.99.2	0.000092
ORF6	27	W27R	TgG	CgT	1	2	AY.99.2	0.000092
ORF6	27	W27L	tGg	tTg	2	2	B	0.000256
ORF6	27	W27C	tgG	tgT	2	2	B.1	0.000018
ORF6	27	W27del	TGG	---	2	2	B.1.1.1	0.000653
ORF6	27	W27L	tGg	tTg	2	2	B.1.1.153	0.002191
ORF6	27	W27del	TGG	---	2	2	B.1.1.231	0.006192
ORF6	27	W27L	tGg	tTg	2	2	B.1.1.317	0.000823
ORF6	27	W27R	Tgg	Agg	2	2	B.1.1.434	0.000697
ORF6	27	W27L	tGg	tTg	2	2	B.1.1.448	0.004065
ORF6	27	W27del	TGG	---	2	2	B.1.1.461	0.024096
ORF6	27	W27L	tGg	tTg	2	2	B.1.1.523	0.003125
ORF6	27	W27G	Tgg	Ggg	2	2	B.1.1.7	0.000002
ORF6	27	W27L	tGg	tTg	2	2	B.1.177.17	0.001642
ORF6	27	W27L	tGg	tTg	2	2	B.1.177.46	0.001837
ORF6	27	W27del	TGG	---	2	2	B.1.177.7	0.00033
ORF6	27	W27del	TGG	---	2	2	B.1.195	0.01005
ORF6	27	W27del	TGG	---	2	2	B.1.221	0.000142
ORF6	27	W27del	TGG	---	2	2	B.1.229	0.019417
ORF6	27	W27del	TGG	---	2	2	B.1.243	0.000139
ORF6	27	W27L	tGg	tTg	2	2	B.1.258.12	0.015748
ORF6	27	W27L	tGg	tTg	2	2	B.1.258.17	0.000208
ORF6	27	W27L	tGg	tTg	2	2	B.1.293	0.025
ORF6	27	W27L	tGg	tTg	2	2	B.1.324	0.00321
ORF6	27	W27del	TGG	---	2	2	B.1.332	0.006993
ORF6	27	W27del	TGG	---	2	2	B.1.36.17	0.000988
ORF6	27	W27L	tGg	tTg	2	2	B.1.362	0.003082
ORF6	27	W27del	TGG	---	2	2	B.1.400	0.000858
ORF6	27	W27L	tGg	tTg	2	2	B.1.438	0.013072
ORF6	27	W27del	TGG	---	2	2	B.1.438.1	0.000215
ORF6	27	W27del	TGG	---	2	2	B.1.466.2	0.000782
ORF6	27	W27L	tGg	tTg	2	2	B.1.497	0.00063
ORF6	27	W27L	tGg	tTg	2	2	B.1.499	0.002101
ORF6	27	W27L	tGg	tTg	2	2	B.1.517	0.000854
ORF6	27	W27del	TGG	---	2	2	B.1.524	0.002813
ORF6	27	W27C	tgG	tgC	2	2	B.1.526	0.000047
ORF6	27	W27del	TGG	---	2	2	B.1.554	0.008811
ORF6	27	W27L	tGg	tTg	2	2	B.1.561	0.000794
ORF6	27	W27L	tGg	tTg	2	2	B.1.567	0.006667
ORF6	27	W27L	tGg	tTg	2	2	B.1.574	0.004301
ORF6	27	W27del	TGG	---	2	2	B.1.575	0.000607
ORF6	27	W27del	TGG	---	2	2	B.1.595	0.000522
ORF6	27	W27del	TGG	---	2	2	B.1.596	0.000174
ORF6	27	W27L	tGg	tTg	2	2	B.1.609	0.000959
ORF6	27	W27del	TGG	---	2	2	B.1.617.1	0.000258
ORF6	27	W27G	Tgg	Ggg	1	2	B.1.617.2	0.000004
ORF6	27	W27G	TgG	GgA	1	2	B.1.617.2	0.000004
ORF6	27	W27del	TGG	---	2	2	B.1.617.3	0.00597
ORF6	27	W27L	tGg	tTg	2	2	B.1.620	0.001892
ORF6	27	W27L	tGg	tTg	2	2	B.1.637	0.000146
ORF6	27	W27del	TGG	---	2	2	D.2	0.00015
ORF6	27	W27S	tGg	tCg	2	2	D.2	0.00015
ORF6	27	W27del	TGG	---	2	2	P.1.14	0.000096
ORF6	27	W27C	tgG	tgT	2	2	P.1.14	0.000096
ORF6	27	W27L	tGg	tTg	2	2	P.1.15	0.000465
ORF6	27	W27L	tGg	tTg	2	2	P.1.2	0.002312
ORF6	27	W27D	TGG	GAT	1	1		0.055556
ORF6	27	W27Q	TGg	CAg	1	1		0.055556
ORF6	27	W27Y	tGG	tAT	1	1		0.055556
ORF6	27	W27H	TGG	CAT	1	1		0.055556
ORF6	27	W27C	tgG	tgT	1	1		0.055556
ORF6	27	W27E	TGg	GAg	1	1		0.055556
ORF6	27	W27del	TGG	---	1	1	A.1	0.000282
ORF6	27	W27L	tGg	tTg	1	1	A.23.1	0.000704
ORF6	27	W27L	tGg	tTg	1	1	A.5	0.001923
ORF6	27	W27L	tGg	tTg	1	1	AH.2	0.012048
ORF6	27	W27E	TGg	GAg	1	1	All	0
ORF6	27	W27H	TGG	CAT	1	1	All	0
ORF6	27	W27Q	TGg	CAg	1	1	All	0
ORF6	27	W27D	TGG	GAT	1	1	All	0
ORF6	27	W27del	TGG	---	1	1	AP.1	0.001502
ORF6	27	W27del	TGG	---	1	1	AU.1	0.001266
ORF6	27	W27L	tGg	tTg	1	1	AU.2	0.002421
ORF6	27	W27L	tGg	tTg	1	1	AY.1	0.000396
ORF6	27	W27R	Tgg	Cgg	1	1	AY.100	0.000046
ORF6	27	W27L	tGg	tTg	1	1	AY.101	0.00049
ORF6	27	W27del	TGG	---	1	1	AY.101	0.00049
ORF6	27	W27X	tGg	tAg	1	1	AY.101	0.00049
ORF6	27	W27R	Tgg	Agg	1	1	AY.102	0.000027
ORF6	27	W27G	Tgg	Ggg	1	1	AY.102	0.000027
ORF6	27	W27L	tGg	tTg	1	1	AY.104	0.001984
ORF6	27	W27C	tgG	tgT	1	1	AY.105	0.000643
ORF6	27	W27L	tGg	tTg	1	1	AY.106	0.000335
ORF6	27	W27del	TGG	---	1	1	AY.108	0.001103
ORF6	27	W27X	tGg	tAg	1	1	AY.113	0.000142
ORF6	27	W27C	tgG	tgT	1	1	AY.113	0.000142
ORF6	27	W27del	TGG	---	1	1	AY.116	0.000287
ORF6	27	W27X	tGg	tAg	1	1	AY.117	0.000085
ORF6	27	W27del	TGG	---	1	1	AY.117	0.000085
ORF6	27	W27C	tgG	tgT	1	1	AY.119	0.000035
ORF6	27	W27C	tgG	tgT	1	1	AY.120	0.000037
ORF6	27	W27del	TGG	---	1	1	AY.120.1	0.000321
ORF6	27	W27L	tGg	tTg	1	1	AY.120.1	0.000321
ORF6	27	W27del	TGG	---	1	1	AY.120.2.1	0.000498
ORF6	27	W27R	Tgg	Cgg	1	1	AY.121	0.000135
ORF6	27	W27del	TGG	---	1	1	AY.121	0.000135
ORF6	27	W27C	tgG	tgT	1	1	AY.13	0.000161
ORF6	27	W27del	TGG	---	1	1	AY.16	0.00038
ORF6	27	W27L	tGg	tTg	1	1	AY.2	0.000356
ORF6	27	W27C	tgG	tgT	1	1	AY.23	0.00007
ORF6	27	W27del2	tGG	t--	1	1	AY.25	0.000006
ORF6	27	W27C	tgG	tgT	1	1	AY.26	0.000028
ORF6	27	W27G	Tgg	Ggg	1	1	AY.26	0.000028
ORF6	27	W27del2	tGG	t--	1	1	AY.29	0.000016
ORF6	27	W27del	TGG	---	1	1	AY.29.1	0.000221
ORF6	27	W27C	tgG	tgT	1	1	AY.3	0.00001
ORF6	27	W27del	TGG	---	1	1	AY.30	0.000396
ORF6	27	W27X	tgG	tgA	1	1	AY.30	0.000396
ORF6	27	W27L	tGg	tTg	1	1	AY.32	0.000532
ORF6	27	W27R	Tgg	Agg	1	1	AY.33	0.000067
ORF6	27	W27del1	tGg	t-g	1	1	AY.34	0.000097
ORF6	27	W27del	TGG	---	1	1	AY.34.1	0.00051
ORF6	27	W27del	TGG	---	1	1	AY.37	0.000316
ORF6	27	W27del	TGG	---	1	1	AY.38	0.000499
ORF6	27	W27C	tgG	tgT	1	1	AY.39	0.000025
ORF6	27	W27X	tGg	tAg	1	1	AY.39.1	0.00004
ORF6	27	W27S	tGg	tCg	1	1	AY.4	0.000002
ORF6	27	W27G	Tgg	Ggg	1	1	AY.4	0.000002
ORF6	27	W27del	TGG	---	1	1	AY.4.1	0.000737
ORF6	27	W27R	Tgg	Cgg	1	1	AY.4.2.1	0.000149
ORF6	27	W27C	tgG	tgT	1	1	AY.4.3	0.000842
ORF6	27	W27R	Tgg	Cgg	1	1	AY.4.5	0.000107
ORF6	27	W27R	Tgg	Agg	1	1	AY.46	0.000104
ORF6	27	W27L	tGg	tTg	1	1	AY.46.1	0.001027
ORF6	27	W27R	Tgg	Cgg	1	1	AY.46.2	0.000635
ORF6	27	W27X	tGg	tAg	1	1	AY.46.2	0.000635
ORF6	27	W27del	TGG	---	1	1	AY.46.3	0.000934
ORF6	27	W27C	tgG	tgT	1	1	AY.46.4	0.000165
ORF6	27	W27R	Tgg	Cgg	1	1	AY.46.4	0.000165
ORF6	27	W27X	tgG	tgA	1	1	AY.46.5	0.000198
ORF6	27	W27L	tGg	tTg	1	1	AY.46.5	0.000198
ORF6	27	W27Y	tGG	tAT	1	1	AY.46.6	0.000072
ORF6	27	W27C	tgG	tgT	1	1	AY.5	0.000021
ORF6	27	W27del	TGG	---	1	1	AY.5.3	0.000337
ORF6	27	W27R	Tgg	Cgg	1	1	AY.5.4	0.000277
ORF6	27	W27X	tGg	tAg	1	1	AY.5.4	0.000277
ORF6	27	W27del	TGG	---	1	1	AY.57	0.000656
ORF6	27	W27del	TGG	---	1	1	AY.59	0.00053
ORF6	27	W27L	tGg	tTg	1	1	AY.60	0.000938
ORF6	27	W27F	tGG	tTT	1	1	AY.61	0.000105
ORF6	27	W27X	tgG	tgA	1	1	AY.61	0.000105
ORF6	27	W27L	tGg	tTg	1	1	AY.62	0.000436
ORF6	27	W27del	TGG	---	1	1	AY.63	0.000387
ORF6	27	W27C	tgG	tgT	1	1	AY.64	0.000595
ORF6	27	W27del	TGG	---	1	1	AY.70	0.000209
ORF6	27	W27R	Tgg	Cgg	1	1	AY.73	0.000665
ORF6	27	W27del	TGG	---	1	1	AY.79	0.001211
ORF6	27	W27X	tgG	tgA	1	1	AY.8	0.000606
ORF6	27	W27S	TgG	AgT	1	1	AY.85	0.000427
ORF6	27	W27L	tGg	tTg	1	1	AY.86	0.00083
ORF6	27	W27del	TGG	---	1	1	AY.88	0.000884
ORF6	27	W27R	Tgg	Cgg	1	1	AY.9	0.000068
ORF6	27	W27X	tGg	tAg	1	1	AY.9.1	0.000084
ORF6	27	W27del	TGG	---	1	1	AY.9.2.1	0.001976
ORF6	27	W27del	TGG	---	1	1	AY.97	0.001701
ORF6	27	W27del	TGG	---	1	1	AY.99	0.001049
ORF6	27	W27X	tgG	tgA	1	1	B	0.000128
ORF6	27	W27del1	tgG	tg-	1	1	B	0.000128
ORF6	27	W27del1	tGg	t-g	1	1	B.1	0.000009
ORF6	27	W27del2	TGg	--g	1	1	B.1	0.000009
ORF6	27	W27G	Tgg	Ggg	1	1	B.1.1	0.000018
ORF6	27	W27R	Tgg	Agg	1	1	B.1.1	0.000018
ORF6	27	W27X	tGG	tAA	1	1	B.1.1	0.000018
ORF6	27	W27C	tgG	tgT	1	1	B.1.1.132	0.014925
ORF6	27	W27F	tGG	tTC	1	1	B.1.1.153	0.001095
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.174	0.003378
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.216	0.00089
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.220	0.001859
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.241	0.00207
ORF6	27	W27del	TGG	---	1	1	B.1.1.241	0.00207
ORF6	27	W27del	TGG	---	1	1	B.1.1.25	0.000569
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.284	0.000107
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.301	0.001179
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.302	0.002075
ORF6	27	W27del	TGG	---	1	1	B.1.1.306	0.000438
ORF6	27	W27del	TGG	---	1	1	B.1.1.307	0.002532
ORF6	27	W27del	TGG	---	1	1	B.1.1.316	0.000925
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.322	0.008772
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.33	0.000421
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.333	0.001076
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.358	0.034483
ORF6	27	W27del	TGG	---	1	1	B.1.1.369	0.000446
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.369	0.000446
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.37	0.000193
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.372	0.000689
ORF6	27	W27del	TGG	---	1	1	B.1.1.38	0.058824
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.39	0.00051
ORF6	27	W27del	TGG	---	1	1	B.1.1.397	0.002252
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.397	0.002252
ORF6	27	W27del	TGG	---	1	1	B.1.1.434	0.000349
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.464	0.001473
ORF6	27	W27del	TGG	---	1	1	B.1.1.50	0.000679
ORF6	27	W27del	TGG	---	1	1	B.1.1.51	0.001718
ORF6	27	W27X	tgG	tgA	1	1	B.1.1.519	0.00004
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.526	0.003546
ORF6	27	W27del	TGG	---	1	1	B.1.1.63	0.000386
ORF6	27	W27del	TGG	---	1	1	B.1.1.70	0.000341
ORF6	27	W27L	tGg	tTg	1	1	B.1.1.70	0.000341
ORF6	27	W27del	TGG	---	1	1	B.1.1.8	0.003584
ORF6	27	W27del	TGG	---	1	1	B.1.1.83	0.00271
ORF6	27	W27del	TGG	---	1	1	B.1.110.3	0.000718
ORF6	27	W27L	tGg	tTg	1	1	B.1.128	0.000635
ORF6	27	W27del	TGG	---	1	1	B.1.131	0.008772
ORF6	27	W27del	TGG	---	1	1	B.1.160	0.000031
ORF6	27	W27X	tgG	tgA	1	1	B.1.160	0.000031
ORF6	27	W27L	tGg	tTg	1	1	B.1.160.16	0.000929
ORF6	27	W27L	tGg	tTg	1	1	B.1.160.31	0.008065
ORF6	27	W27C	tgG	tgT	1	1	B.1.177	0.000013
ORF6	27	W27R	Tgg	Cgg	1	1	B.1.177	0.000013
ORF6	27	W27C	tgG	tgT	1	1	B.1.177.12	0.000152
ORF6	27	W27del2	tGG	t--	1	1	B.1.177.16	0.000664
ORF6	27	W27del	TGG	---	1	1	B.1.177.17	0.000821
ORF6	27	W27G	TgG	GgA	1	1	B.1.177.21	0.000076
ORF6	27	W27F	tGG	tTT	1	1	B.1.177.21	0.000076
ORF6	27	W27del1	tGg	t-g	1	1	B.1.177.21	0.000076
ORF6	27	W27del	TGG	---	1	1	B.1.177.44	0.000519
ORF6	27	W27del	TGG	---	1	1	B.1.177.5	0.001242
ORF6	27	W27L	tGg	tTg	1	1	B.1.177.57	0.000281
ORF6	27	W27del	TGG	---	1	1	B.1.177.58	0.001332
ORF6	27	W27C	tgG	tgT	1	1	B.1.177.58	0.001332
ORF6	27	W27C	tgG	tgT	1	1	B.1.177.60	0.000218
ORF6	27	W27L	tGg	tTg	1	1	B.1.177.65	0.000665
ORF6	27	W27L	tGg	tTg	1	1	B.1.177.7	0.000165
ORF6	27	W27S	tGg	tCg	1	1	B.1.177.73	0.000566
ORF6	27	W27L	tGg	tTg	1	1	B.1.177.74	0.015152
ORF6	27	W27L	tGg	tTg	1	1	B.1.177.75	0.001041
ORF6	27	W27L	tGg	tTg	1	1	B.1.177.77	0.000726
ORF6	27	W27L	tGg	tTg	1	1	B.1.177.8	0.000752
ORF6	27	W27R	Tgg	Cgg	1	1	B.1.177.81	0.000189
ORF6	27	W27L	tGg	tTg	1	1	B.1.177.82	0.000477
ORF6	27	W27L	tGg	tTg	1	1	B.1.177.86	0.000183
ORF6	27	W27C	tgG	tgT	1	1	B.1.177.86	0.000183
ORF6	27	W27del	TGG	---	1	1	B.1.177.9	0.001332
ORF6	27	W27del2	TGg	--g	1	1	B.1.2	0.000009
ORF6	27	W27C	tgG	tgT	1	1	B.1.2	0.000009
ORF6	27	W27L	tGg	tTg	1	1	B.1.22	0.001318
ORF6	27	W27del	TGG	---	1	1	B.1.232	0.000537
ORF6	27	W27del	TGG	---	1	1	B.1.239	0.001221
ORF6	27	W27L	tGg	tTg	1	1	B.1.239	0.001221
ORF6	27	W27G	Tgg	Ggg	1	1	B.1.240	0.000216
ORF6	27	W27C	tgG	tgT	1	1	B.1.243	0.00007
ORF6	27	W27X	tGg	tAg	1	1	B.1.258	0.000067
ORF6	27	W27del	TGG	---	1	1	B.1.258.17	0.000104
ORF6	27	W27S	tGg	tCg	1	1	B.1.258.7	0.001912
ORF6	27	W27del	TGG	---	1	1	B.1.260	0.003344
ORF6	27	W27del1	tGg	t-g	1	1	B.1.265	0.001271
ORF6	27	W27L	tGg	tTg	1	1	B.1.311	0.000275
ORF6	27	W27C	tgG	tgT	1	1	B.1.311	0.000275
ORF6	27	W27del	TGG	---	1	1	B.1.319	0.003049
ORF6	27	W27L	tGg	tTg	1	1	B.1.320	0.001245
ORF6	27	W27L	tGg	tTg	1	1	B.1.340	0.004292
ORF6	27	W27L	tGg	tTg	1	1	B.1.349	0.000715
ORF6	27	W27del2	TGg	--g	1	1	B.1.351	0.00003
ORF6	27	W27L	tGg	tTg	1	1	B.1.351.5	0.0006
ORF6	27	W27del	TGG	---	1	1	B.1.36.1	0.00114
ORF6	27	W27L	tGg	tTg	1	1	B.1.36.16	0.001425
ORF6	27	W27del	TGG	---	1	1	B.1.36.24	0.006173
ORF6	27	W27C	tgG	tgC	1	1	B.1.36.29	0.000517
ORF6	27	W27del	TGG	---	1	1	B.1.36.29	0.000517
ORF6	27	W27L	tGg	tTg	1	1	B.1.36.38	0.001642
ORF6	27	W27del	TGG	---	1	1	B.1.36.38	0.001642
ORF6	27	W27L	tGg	tTg	1	1	B.1.36.8	0.001
ORF6	27	W27L	tGg	tTg	1	1	B.1.361	0.001289
ORF6	27	W27del	TGG	---	1	1	B.1.362	0.001541
ORF6	27	W27G	Tgg	Ggg	1	1	B.1.362	0.001541
ORF6	27	W27R	Tgg	Agg	1	1	B.1.362	0.001541
ORF6	27	W27L	tGg	tTg	1	1	B.1.367	0.000792
ORF6	27	W27L	tGg	tTg	1	1	B.1.377	0.004566
ORF6	27	W27L	tGg	tTg	1	1	B.1.378	0.006849
ORF6	27	W27R	Tgg	Cgg	1	1	B.1.385	0.010638
ORF6	27	W27del	TGG	---	1	1	B.1.391	0.001127
ORF6	27	W27del	TGG	---	1	1	B.1.396	0.000706
ORF6	27	W27R	Tgg	Agg	1	1	B.1.398	0.002976
ORF6	27	W27L	tGg	tTg	1	1	B.1.402	0.009804
ORF6	27	W27L	tGg	tTg	1	1	B.1.416	0.001269
ORF6	27	W27Y	tGG	tAT	1	1	B.1.416	0.001269
ORF6	27	W27R	Tgg	Cgg	1	1	B.1.422	0.000812
ORF6	27	W27L	tGg	tTg	1	1	B.1.422	0.000812
ORF6	27	W27R	Tgg	Agg	1	1	B.1.427	0.00005
ORF6	27	W27C	tgG	tgT	1	1	B.1.429	0.000024
ORF6	27	W27del	TGG	---	1	1	B.1.429.1	0.012048
ORF6	27	W27X	tgG	tgA	1	1	B.1.438.1	0.000107
ORF6	27	W27L	tGg	tTg	1	1	B.1.460	0.017857
ORF6	27	W27del	TGG	---	1	1	B.1.462	0.007246
ORF6	27	W27S	tGg	tCg	1	1	B.1.466.2	0.000391
ORF6	27	W27del	TGG	---	1	1	B.1.469	0.00361
ORF6	27	W27L	tGg	tTg	1	1	B.1.471	0.002732
ORF6	27	W27L	tGg	tTg	1	1	B.1.503	0.002488
ORF6	27	W27L	tGg	tTg	1	1	B.1.524	0.001406
ORF6	27	W27X	tgG	tgA	1	1	B.1.526	0.000024
ORF6	27	W27del	TGG	---	1	1	B.1.565	0.00081
ORF6	27	W27L	tGg	tTg	1	1	B.1.568	0.001111
ORF6	27	W27L	tGg	tTg	1	1	B.1.575	0.000303
ORF6	27	W27del	TGG	---	1	1	B.1.576	0.000907
ORF6	27	W27X	tGg	tAg	1	1	B.1.580	0.004065
ORF6	27	W27R	Tgg	Agg	1	1	B.1.595	0.000261
ORF6	27	W27del1	tGg	t-g	1	1	B.1.596	0.000087
ORF6	27	W27L	tGg	tTg	1	1	B.1.605	0.005952
ORF6	27	W27R	Tgg	Cgg	1	1	B.1.609	0.000479
ORF6	27	W27C	tgG	tgT	1	1	B.1.617.1	0.000129
ORF6	27	W27R	Tgg	Agg	1	1	B.1.617.1	0.000129
ORF6	27	W27X	tgG	tgA	1	1	B.1.617.1	0.000129
ORF6	27	W27del1	tgG	tg-	1	1	B.1.617.2	0.000004
ORF6	27	W27F	tGG	tTT	1	1	B.1.617.2	0.000004
ORF6	27	W27L	tGg	tTg	1	1	B.1.621.1	0.000506
ORF6	27	W27L	tGg	tTg	1	1	B.1.623	0.000536
ORF6	27	W27del	TGG	---	1	1	B.1.627	0.00202
ORF6	27	W27X	tgG	tgA	1	1	B.1.637	0.000073
ORF6	27	W27del	TGG	---	1	1	B.1.9.3	0.038462
ORF6	27	W27del	TGG	---	1	1	B.31	0.003731
ORF6	27	W27L	tGg	tTg	1	1	B.39	0.002331
ORF6	27	W27L	tGg	tTg	1	1	B.40	0.000364
ORF6	27	W27X	tgG	tgA	1	1	B.6.6	0.000889
ORF6	27	W27L	tGg	tTg	1	1	C.1.2	0.004255
ORF6	27	W27L	tGg	tTg	1	1	C.14	0.004329
ORF6	27	W27del	TGG	---	1	1	C.2.1	0.006667
ORF6	27	W27L	tGg	tTg	1	1	C.26	0.007353
ORF6	27	W27L	tGg	tTg	1	1	C.35	0.000774
ORF6	27	W27del	TGG	---	1	1	C.36.3	0.000567
ORF6	27	W27X	tgG	tgA	1	1	C.36.3	0.000567
ORF6	27	W27del	TGG	---	1	1	C.36.3.1	0.002717
ORF6	27	W27X	tgG	tgA	1	1	C.37	0.000116
ORF6	27	W27L	tGg	tTg	1	1	C.37.1	0.002618
ORF6	27	W27del	TGG	---	1	1	N.10	0.029412
ORF6	27	W27G	Tgg	Ggg	1	1	P.1	0.000016
ORF6	27	W27C	tgG	tgT	1	1	P.1	0.000016
ORF6	27	W27del1	tGg	t-g	1	1	P.1	0.000016
ORF6	27	W27L	tGg	tTg	1	1	P.1.1	0.000318
ORF6	27	W27S	tGg	tCg	1	1	P.1.1	0.000318
ORF6	27	W27del	TGG	---	1	1	P.1.1	0.000318
ORF6	27	W27L	tGg	tTg	1	1	P.1.12	0.000484
ORF6	27	W27del	TGG	---	1	1	P.1.16	0.000374
ORF6	27	W27C	tgG	tgT	1	1	P.1.2	0.001156
ORF6	27	W27del	TGG	---	1	1	P.1.7	0.000319
ORF6	27	W27R	Tgg	Cgg	1	1	P.1.8	0.004785
ORF6	27	W27del	TGG	---	1	1	Q.1	0.000126
ORF6	27	W27L	tGg	tTg	1	1	Q.2	0.000613
ORF6	27	W27L	tGg	tTg	1	1	Q.3	0.000145
ORF6	27	W27L	tGg	tTg	1	1	Q.5	0.016949
ORF6	27	W27del2	tGG	t--	1	1	Q.8	0.000165
ORF6	27	W27del	TGG	---	1	1	Q.8	0.000165
ORF6	27	W27R	Tgg	Cgg	1	1	W.3	0.005263
ORF6	27	W27X	tgG	tgA	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.