CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 25 | S25del | del | TCC | --- | 2628 | 2628 | 1 | 27274-27276 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 25 | S25del | TCC | --- | 2628 | 2628 | All | 0.000503 |
ORF6 | 25 | S25del | TCC | --- | 439 | 439 | AY.4 | 0.000683 |
ORF6 | 25 | S25del | TCC | --- | 365 | 365 | B.1.1.7 | 0.000327 |
ORF6 | 25 | S25del | TCC | --- | 106 | 106 | AY.43 | 0.00047 |
ORF6 | 25 | S25del | TCC | --- | 106 | 106 | B.1.617.2 | 0.000399 |
ORF6 | 25 | S25del | TCC | --- | 100 | 100 | AY.44 | 0.000609 |
ORF6 | 25 | S25del | TCC | --- | 95 | 95 | AY.4.2 | 0.00206 |
ORF6 | 25 | S25del | TCC | --- | 93 | 93 | AY.25 | 0.000559 |
ORF6 | 25 | S25del | TCC | --- | 64 | 64 | AY.103 | 0.000397 |
ORF6 | 25 | S25del | TCC | --- | 63 | 63 | B.1 | 0.000577 |
ORF6 | 25 | S25del | TCC | --- | 59 | 59 | AY.47 | 0.001835 |
ORF6 | 25 | S25del | TCC | --- | 58 | 58 | AY.3 | 0.000577 |
ORF6 | 25 | S25del | TCC | --- | 52 | 52 | AY.120 | 0.001933 |
ORF6 | 25 | S25del | TCC | --- | 49 | 49 | B.1.2 | 0.000431 |
ORF6 | 25 | S25del | TCC | --- | 41 | 41 | B.1.616 | 1 |
ORF6 | 25 | S25del | TCC | --- | 37 | 37 | P.1 | 0.000583 |
ORF6 | 25 | S25del | TCC | --- | 36 | 36 | AY.39 | 0.00089 |
ORF6 | 25 | S25del | TCC | --- | 32 | 32 | N.8 | 1 |
ORF6 | 25 | S25del | TCC | --- | 31 | 31 | AY.5 | 0.00064 |
ORF6 | 25 | S25del | TCC | --- | 26 | 26 | B.1.526 | 0.000611 |
ORF6 | 25 | S25del | TCC | --- | 24 | 24 | AY.26 | 0.000679 |
ORF6 | 25 | S25del | TCC | --- | 23 | 23 | AY.111 | 0.004212 |
ORF6 | 25 | S25del | TCC | --- | 21 | 21 | AY.84 | 0.009186 |
ORF6 | 25 | S25del | TCC | --- | 20 | 20 | B.1.108 | 0.116279 |
ORF6 | 25 | S25del | TCC | --- | 18 | 18 | B.1.177.21 | 0.001376 |
ORF6 | 25 | S25del | TCC | --- | 17 | 17 | AY.13 | 0.002737 |
ORF6 | 25 | S25del | TCC | --- | 17 | 17 | AY.75 | 0.000952 |
ORF6 | 25 | S25del | TCC | --- | 16 | 16 | AY.118 | 0.001002 |
ORF6 | 25 | S25del | TCC | --- | 16 | 16 | AY.42 | 0.000644 |
ORF6 | 25 | S25del | TCC | --- | 15 | 15 | AY.36 | 0.002223 |
ORF6 | 25 | S25del | TCC | --- | 14 | 14 | AY.119 | 0.000494 |
ORF6 | 25 | S25del | TCC | --- | 14 | 14 | AY.54 | 0.001335 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | AY.29 | 0.000205 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | AY.85 | 0.005553 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | AY.90 | 0.008898 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | B.1.105 | 0.125 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | B.1.429 | 0.000306 |
ORF6 | 25 | S25del | TCC | --- | 12 | 12 | AY.20 | 0.000466 |
ORF6 | 25 | S25del | TCC | --- | 12 | 12 | B.1.36.36 | 0.007225 |
ORF6 | 25 | S25del | TCC | --- | 11 | 11 | AY.113 | 0.001566 |
ORF6 | 25 | S25del | TCC | --- | 11 | 11 | AY.39.1 | 0.000436 |
ORF6 | 25 | S25del | TCC | --- | 11 | 11 | AY.46 | 0.001145 |
ORF6 | 25 | S25del | TCC | --- | 11 | 11 | AY.9.2 | 0.000404 |
ORF6 | 25 | S25del | TCC | --- | 10 | 10 | AY.14 | 0.00088 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | AY.100 | 0.000414 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | AY.106 | 0.003014 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | AY.45 | 0.001095 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | B.1.240 | 0.00194 |
ORF6 | 25 | S25del | TCC | --- | 8 | 8 | AY.46.5 | 0.001587 |
ORF6 | 25 | S25del | TCC | --- | 8 | 8 | B.1.351 | 0.000238 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | AY.102 | 0.000186 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | AY.61 | 0.000733 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.234 | 0.000924 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.351.2 | 0.002118 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.36.26 | 0.02 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.621 | 0.00062 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | AY.27 | 0.000388 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | AY.6 | 0.000247 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | AY.98.1 | 0.000291 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | B.1.1.214 | 0.000333 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | B.1.1.222 | 0.001224 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | B.1.258 | 0.000399 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | B.1.311 | 0.001647 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | AY.33 | 0.000334 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | AY.34 | 0.000485 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | AY.98 | 0.000395 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | B.1.1.318 | 0.001509 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | B.1.427 | 0.000252 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | P.1.10 | 0.001347 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | R.1 | 0.00045 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | A | 0.001548 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | AU.2 | 0.009685 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | AY.110 | 0.000451 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | AY.68 | 0.001095 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | AY.9.1 | 0.000335 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | P.1.17 | 0.000647 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.12 | 0.000948 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.2 | 0.001068 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.46.6 | 0.000217 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.71 | 0.001425 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.9 | 0.000203 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.177.10 | 0.002634 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.214.2 | 0.001799 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.617.1 | 0.000387 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.637 | 0.000219 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | C.37 | 0.000348 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | P.3 | 0.004785 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.23 | 0.000139 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.28 | 0.003781 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.40 | 0.001929 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.52 | 0.001629 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.53 | 0.000575 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.70 | 0.000417 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.74 | 0.000231 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.99.2 | 0.000184 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B | 0.000256 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.1.231 | 0.006192 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.1.461 | 0.024096 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.195 | 0.01005 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.229 | 0.019417 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.332 | 0.006993 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.400 | 0.000858 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.438.1 | 0.000215 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.466.2 | 0.000782 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.524 | 0.002813 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.554 | 0.008811 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | D.2 | 0.00015 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | A.1 | 0.000282 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AP.1 | 0.001502 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AU.1 | 0.001266 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.116 | 0.000287 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.117 | 0.000085 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.121 | 0.000135 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.16 | 0.00038 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.30 | 0.000396 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.37 | 0.000316 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.46.3 | 0.000934 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.57 | 0.000656 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.59 | 0.00053 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.63 | 0.000387 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.79 | 0.001211 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.88 | 0.000884 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.97 | 0.001701 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.241 | 0.00207 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.307 | 0.002532 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.316 | 0.000925 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.38 | 0.058824 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.8 | 0.003584 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.83 | 0.00271 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.131 | 0.008772 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.232 | 0.000537 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.239 | 0.001221 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.260 | 0.003344 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.36.24 | 0.006173 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.391 | 0.001127 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.396 | 0.000706 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.429.1 | 0.012048 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.462 | 0.007246 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.469 | 0.00361 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.565 | 0.00081 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.9.3 | 0.038462 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.31 | 0.003731 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | C.2.1 | 0.006667 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | C.36.3.1 | 0.002717 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | N.10 | 0.029412 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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