CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 25 | S25del | del | TCC | --- | 2628 | 2628 | 1 | 27274-27276 | |
ORF6 | 25 | S25S | syn | tcC | tcT | 596 | 394 | 0.661074 | 27274-27276 | |
ORF6 | 25 | S25S | syn | tcC | tcG | 596 | 136 | 0.228188 | 27274-27276 | |
ORF6 | 25 | S25S | syn | tcC | tcA | 596 | 61 | 0.102349 | 27274-27276 | |
ORF6 | 25 | S25S | syn | TCC | AGT | 596 | 3 | 0.00503356 | 27274-27276 | |
ORF6 | 25 | S25S | syn | TCc | AGc | 596 | 2 | 0.0033557 | 27274-27276 | |
ORF6 | 25 | S25F | nonsyn | tCc | tTc | 195 | 193 | 0.989744 | 27274-27276 | |
ORF6 | 25 | S25F | nonsyn | tCC | tTT | 195 | 2 | 0.0102564 | 27274-27276 | |
ORF6 | 25 | S25P | nonsyn | Tcc | Ccc | 86 | 79 | 0.918605 | 27274-27276 | |
ORF6 | 25 | S25P | nonsyn | TcC | CcT | 86 | 4 | 0.0465116 | 27274-27276 | |
ORF6 | 25 | S25P | nonsyn | TcC | CcA | 86 | 3 | 0.0348837 | 27274-27276 | |
ORF6 | 25 | S25del2 | del | tCC | t-- | 33 | 32 | 0.969697 | 27274-27276 | |
ORF6 | 25 | S25del2 | del | TCC | --N | 33 | 1 | 0.030303 | 27274-27276 | |
ORF6 | 25 | S25A | nonsyn | Tcc | Gcc | 27 | 25 | 0.925926 | 27274-27276 | |
ORF6 | 25 | S25A | nonsyn | TcC | GcA | 27 | 2 | 0.0740741 | 27274-27276 | |
ORF6 | 25 | S25Y | nonsyn | tCc | tAc | 12 | 10 | 0.833333 | 27274-27276 | |
ORF6 | 25 | S25Y | nonsyn | tCC | tAT | 12 | 2 | 0.166667 | 27274-27276 | |
ORF6 | 25 | S25T | nonsyn | Tcc | Acc | 11 | 11 | 1 | 27274-27276 | |
ORF6 | 25 | S25del1 | del | tCc | t-c | 11 | 6 | 0.545455 | 27274-27276 | |
ORF6 | 25 | S25del1 | del | tcC | tc- | 11 | 4 | 0.363636 | 27274-27276 | |
ORF6 | 25 | S25del1 | del | Tcc | -cc | 11 | 1 | 0.0909091 | 27274-27276 | |
ORF6 | 25 | S25C | nonsyn | tCc | tGc | 7 | 7 | 1 | 27274-27276 | |
ORF6 | 25 | S25H | nonsyn | TCc | CAc | 7 | 6 | 0.857143 | 27274-27276 | |
ORF6 | 25 | S25H | nonsyn | TCC | CAT | 7 | 1 | 0.142857 | 27274-27276 | |
ORF6 | 25 | S25I | nonsyn | TCc | ATc | 5 | 5 | 1 | 27274-27276 | |
ORF6 | 25 | S25R | nonsyn | TCC | CGT | 3 | 2 | 0.666667 | 27274-27276 | |
ORF6 | 25 | S25R | nonsyn | TCC | CGA | 3 | 1 | 0.333333 | 27274-27276 | |
ORF6 | 25 | S25L | nonsyn | TCc | CTc | 2 | 1 | 0.5 | 27274-27276 | |
ORF6 | 25 | S25L | nonsyn | tCC | tTA | 2 | 1 | 0.5 | 27274-27276 | |
ORF6 | 25 | S25G | nonsyn | TCc | GGc | 1 | 1 | 1 | 27274-27276 | |
ORF6 | 25 | S25X | nonsyn | tCC | tAA | 1 | 1 | 1 | 27274-27276 | |
ORF6 | 25 | S25N | nonsyn | TCc | AAc | 1 | 1 | 1 | 27274-27276 | |
ORF6 | 25 | S25V | nonsyn | TCC | GTA | 1 | 1 | 1 | 27274-27276 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 25 | S25del | TCC | --- | 2628 | 2628 | All | 0.000503 |
ORF6 | 25 | S25S | tcC | tcT | 394 | 596 | All | 0.000075 |
ORF6 | 25 | S25S | tcC | tcG | 136 | 596 | All | 0.000026 |
ORF6 | 25 | S25S | tcC | tcA | 61 | 596 | All | 0.000012 |
ORF6 | 25 | S25S | TCC | AGT | 3 | 596 | All | 0.000001 |
ORF6 | 25 | S25S | TCc | AGc | 2 | 596 | All | 0 |
ORF6 | 25 | S25del | TCC | --- | 439 | 439 | AY.4 | 0.000683 |
ORF6 | 25 | S25del | TCC | --- | 365 | 365 | B.1.1.7 | 0.000327 |
ORF6 | 25 | S25F | tCc | tTc | 193 | 195 | All | 0.000037 |
ORF6 | 25 | S25F | tCC | tTT | 2 | 195 | All | 0 |
ORF6 | 25 | S25S | tcC | tcG | 119 | 122 | AY.3 | 0.001184 |
ORF6 | 25 | S25S | tcC | tcT | 3 | 122 | AY.3 | 0.00003 |
ORF6 | 25 | S25del | TCC | --- | 106 | 106 | AY.43 | 0.00047 |
ORF6 | 25 | S25F | tCc | tTc | 106 | 106 | B.1.1.7 | 0.000095 |
ORF6 | 25 | S25del | TCC | --- | 106 | 106 | B.1.617.2 | 0.000399 |
ORF6 | 25 | S25S | tcC | tcT | 94 | 103 | B.1.1.7 | 0.000084 |
ORF6 | 25 | S25S | tcC | tcG | 5 | 103 | B.1.1.7 | 0.000004 |
ORF6 | 25 | S25S | TCC | AGT | 3 | 103 | B.1.1.7 | 0.000003 |
ORF6 | 25 | S25S | tcC | tcA | 1 | 103 | B.1.1.7 | 0.000001 |
ORF6 | 25 | S25del | TCC | --- | 100 | 100 | AY.44 | 0.000609 |
ORF6 | 25 | S25del | TCC | --- | 95 | 95 | AY.4.2 | 0.00206 |
ORF6 | 25 | S25del | TCC | --- | 93 | 93 | AY.25 | 0.000559 |
ORF6 | 25 | S25P | Tcc | Ccc | 79 | 86 | All | 0.000015 |
ORF6 | 25 | S25P | TcC | CcT | 4 | 86 | All | 0.000001 |
ORF6 | 25 | S25P | TcC | CcA | 3 | 86 | All | 0.000001 |
ORF6 | 25 | S25S | tcC | tcT | 58 | 80 | AY.4 | 0.00009 |
ORF6 | 25 | S25S | tcC | tcA | 22 | 80 | AY.4 | 0.000034 |
ORF6 | 25 | S25del | TCC | --- | 64 | 64 | AY.103 | 0.000397 |
ORF6 | 25 | S25del | TCC | --- | 63 | 63 | B.1 | 0.000577 |
ORF6 | 25 | S25del | TCC | --- | 59 | 59 | AY.47 | 0.001835 |
ORF6 | 25 | S25S | tcC | tcT | 59 | 59 | B.1.139 | 0.043255 |
ORF6 | 25 | S25del | TCC | --- | 58 | 58 | AY.3 | 0.000577 |
ORF6 | 25 | S25del | TCC | --- | 52 | 52 | AY.120 | 0.001933 |
ORF6 | 25 | S25del | TCC | --- | 49 | 49 | B.1.2 | 0.000431 |
ORF6 | 25 | S25del | TCC | --- | 41 | 41 | B.1.616 | 1 |
ORF6 | 25 | S25del | TCC | --- | 37 | 37 | P.1 | 0.000583 |
ORF6 | 25 | S25del | TCC | --- | 36 | 36 | AY.39 | 0.00089 |
ORF6 | 25 | S25del2 | tCC | t-- | 32 | 33 | All | 0.000006 |
ORF6 | 25 | S25del2 | TCC | --N | 1 | 33 | All | 0 |
ORF6 | 25 | S25del | TCC | --- | 32 | 32 | N.8 | 1 |
ORF6 | 25 | S25del | TCC | --- | 31 | 31 | AY.5 | 0.00064 |
ORF6 | 25 | S25A | Tcc | Gcc | 25 | 27 | All | 0.000005 |
ORF6 | 25 | S25A | TcC | GcA | 2 | 27 | All | 0 |
ORF6 | 25 | S25del | TCC | --- | 26 | 26 | B.1.526 | 0.000611 |
ORF6 | 25 | S25del | TCC | --- | 24 | 24 | AY.26 | 0.000679 |
ORF6 | 25 | S25del | TCC | --- | 23 | 23 | AY.111 | 0.004212 |
ORF6 | 25 | S25S | tcC | tcT | 12 | 23 | B.1 | 0.00011 |
ORF6 | 25 | S25S | tcC | tcA | 7 | 23 | B.1 | 0.000064 |
ORF6 | 25 | S25S | tcC | tcG | 4 | 23 | B.1 | 0.000037 |
ORF6 | 25 | S25del | TCC | --- | 21 | 21 | AY.84 | 0.009186 |
ORF6 | 25 | S25del | TCC | --- | 20 | 20 | B.1.108 | 0.116279 |
ORF6 | 25 | S25del | TCC | --- | 18 | 18 | B.1.177.21 | 0.001376 |
ORF6 | 25 | S25del | TCC | --- | 17 | 17 | AY.13 | 0.002737 |
ORF6 | 25 | S25S | tcC | tcT | 17 | 17 | AY.25 | 0.000102 |
ORF6 | 25 | S25del | TCC | --- | 17 | 17 | AY.75 | 0.000952 |
ORF6 | 25 | S25del | TCC | --- | 16 | 16 | AY.118 | 0.001002 |
ORF6 | 25 | S25del | TCC | --- | 16 | 16 | AY.42 | 0.000644 |
ORF6 | 25 | S25del | TCC | --- | 15 | 15 | AY.36 | 0.002223 |
ORF6 | 25 | S25del2 | tCC | t-- | 15 | 15 | AY.6 | 0.000617 |
ORF6 | 25 | S25del | TCC | --- | 14 | 14 | AY.119 | 0.000494 |
ORF6 | 25 | S25del | TCC | --- | 14 | 14 | AY.54 | 0.001335 |
ORF6 | 25 | S25S | tcC | tcT | 13 | 14 | P.1 | 0.000205 |
ORF6 | 25 | S25S | tcC | tcA | 1 | 14 | P.1 | 0.000016 |
ORF6 | 25 | S25S | tcC | tcT | 13 | 13 | AY.103 | 0.000081 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | AY.29 | 0.000205 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | AY.85 | 0.005553 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | AY.90 | 0.008898 |
ORF6 | 25 | S25S | tcC | tcT | 13 | 13 | AY.99 | 0.013641 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | B.1.105 | 0.125 |
ORF6 | 25 | S25S | tcC | tcT | 12 | 13 | B.1.2 | 0.000106 |
ORF6 | 25 | S25S | tcC | tcA | 1 | 13 | B.1.2 | 0.000009 |
ORF6 | 25 | S25P | Tcc | Ccc | 13 | 13 | B.1.258 | 0.000865 |
ORF6 | 25 | S25del | TCC | --- | 13 | 13 | B.1.429 | 0.000306 |
ORF6 | 25 | S25F | tCc | tTc | 13 | 13 | B.1.617.2 | 0.000049 |
ORF6 | 25 | S25S | tcC | tcT | 8 | 13 | B.1.617.2 | 0.00003 |
ORF6 | 25 | S25S | tcC | tcA | 3 | 13 | B.1.617.2 | 0.000011 |
ORF6 | 25 | S25S | tcC | tcG | 2 | 13 | B.1.617.2 | 0.000008 |
ORF6 | 25 | S25Y | tCc | tAc | 10 | 12 | All | 0.000002 |
ORF6 | 25 | S25Y | tCC | tAT | 2 | 12 | All | 0 |
ORF6 | 25 | S25del | TCC | --- | 12 | 12 | AY.20 | 0.000466 |
ORF6 | 25 | S25del | TCC | --- | 12 | 12 | B.1.36.36 | 0.007225 |
ORF6 | 25 | S25T | Tcc | Acc | 11 | 11 | All | 0.000002 |
ORF6 | 25 | S25del1 | tCc | t-c | 6 | 11 | All | 0.000001 |
ORF6 | 25 | S25del1 | tcC | tc- | 4 | 11 | All | 0.000001 |
ORF6 | 25 | S25del1 | Tcc | -cc | 1 | 11 | All | 0 |
ORF6 | 25 | S25del | TCC | --- | 11 | 11 | AY.113 | 0.001566 |
ORF6 | 25 | S25del | TCC | --- | 11 | 11 | AY.39.1 | 0.000436 |
ORF6 | 25 | S25P | Tcc | Ccc | 11 | 11 | AY.4 | 0.000017 |
ORF6 | 25 | S25S | tcC | tcT | 8 | 11 | AY.44 | 0.000049 |
ORF6 | 25 | S25S | tcC | tcA | 3 | 11 | AY.44 | 0.000018 |
ORF6 | 25 | S25del | TCC | --- | 11 | 11 | AY.46 | 0.001145 |
ORF6 | 25 | S25del | TCC | --- | 11 | 11 | AY.9.2 | 0.000404 |
ORF6 | 25 | S25del | TCC | --- | 10 | 10 | AY.14 | 0.00088 |
ORF6 | 25 | S25S | tcC | tcA | 10 | 10 | B.1.1.222 | 0.00204 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | AY.100 | 0.000414 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | AY.106 | 0.003014 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | AY.45 | 0.001095 |
ORF6 | 25 | S25P | Tcc | Ccc | 8 | 9 | B.1.1.7 | 0.000007 |
ORF6 | 25 | S25P | TcC | CcT | 1 | 9 | B.1.1.7 | 0.000001 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF6 | 25 | S25F | tCc | tTc | 7 | 9 | B.1.177.21 | 0.000535 |
ORF6 | 25 | S25F | tCC | tTT | 2 | 9 | B.1.177.21 | 0.000153 |
ORF6 | 25 | S25del | TCC | --- | 9 | 9 | B.1.240 | 0.00194 |
ORF6 | 25 | S25A | Tcc | Gcc | 8 | 8 | AY.4 | 0.000012 |
ORF6 | 25 | S25del | TCC | --- | 8 | 8 | AY.46.5 | 0.001587 |
ORF6 | 25 | S25S | tcC | tcT | 7 | 8 | B.1.177.21 | 0.000535 |
ORF6 | 25 | S25S | tcC | tcA | 1 | 8 | B.1.177.21 | 0.000076 |
ORF6 | 25 | S25del | TCC | --- | 8 | 8 | B.1.351 | 0.000238 |
ORF6 | 25 | S25C | tCc | tGc | 7 | 7 | All | 0.000001 |
ORF6 | 25 | S25H | TCc | CAc | 6 | 7 | All | 0.000001 |
ORF6 | 25 | S25H | TCC | CAT | 1 | 7 | All | 0 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | AY.102 | 0.000186 |
ORF6 | 25 | S25S | tcC | tcA | 5 | 7 | AY.20 | 0.000194 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 7 | AY.20 | 0.000078 |
ORF6 | 25 | S25F | tCc | tTc | 7 | 7 | AY.4 | 0.000011 |
ORF6 | 25 | S25S | tcC | tcT | 5 | 7 | AY.43 | 0.000022 |
ORF6 | 25 | S25S | tcC | tcG | 2 | 7 | AY.43 | 0.000009 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | AY.61 | 0.000733 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF6 | 25 | S25P | Tcc | Ccc | 4 | 7 | B.1.177.21 | 0.000306 |
ORF6 | 25 | S25P | TcC | CcT | 2 | 7 | B.1.177.21 | 0.000153 |
ORF6 | 25 | S25P | TcC | CcA | 1 | 7 | B.1.177.21 | 0.000076 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.234 | 0.000924 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.351.2 | 0.002118 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.36.26 | 0.02 |
ORF6 | 25 | S25del | TCC | --- | 7 | 7 | B.1.621 | 0.00062 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | AY.27 | 0.000388 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF6 | 25 | S25del2 | tCC | t-- | 6 | 6 | AY.4 | 0.000009 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | AY.6 | 0.000247 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | AY.98.1 | 0.000291 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | B.1.1.214 | 0.000333 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | B.1.1.222 | 0.001224 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | B.1.258 | 0.000399 |
ORF6 | 25 | S25del | TCC | --- | 6 | 6 | B.1.311 | 0.001647 |
ORF6 | 25 | S25P | Tcc | Ccc | 6 | 6 | B.1.580 | 0.02439 |
ORF6 | 25 | S25I | TCc | ATc | 5 | 5 | All | 0.000001 |
ORF6 | 25 | S25S | tcC | tcT | 4 | 5 | AY.29 | 0.000063 |
ORF6 | 25 | S25S | tcC | tcG | 1 | 5 | AY.29 | 0.000016 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | AY.33 | 0.000334 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | AY.34 | 0.000485 |
ORF6 | 25 | S25F | tCc | tTc | 5 | 5 | AY.43 | 0.000022 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | AY.98 | 0.000395 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | B.1.1.318 | 0.001509 |
ORF6 | 25 | S25I | TCc | ATc | 5 | 5 | B.1.177.21 | 0.000382 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | B.1.427 | 0.000252 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | P.1.10 | 0.001347 |
ORF6 | 25 | S25del | TCC | --- | 5 | 5 | R.1 | 0.00045 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | A | 0.001548 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | AU.2 | 0.009685 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | AY.110 | 0.000451 |
ORF6 | 25 | S25S | tcC | tcT | 3 | 4 | AY.23 | 0.000209 |
ORF6 | 25 | S25S | tcC | tcG | 1 | 4 | AY.23 | 0.00007 |
ORF6 | 25 | S25F | tCc | tTc | 4 | 4 | AY.25 | 0.000024 |
ORF6 | 25 | S25S | tcC | tcT | 4 | 4 | AY.61 | 0.000419 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | AY.68 | 0.001095 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | AY.9.1 | 0.000335 |
ORF6 | 25 | S25T | Tcc | Acc | 4 | 4 | AY.98.1 | 0.000194 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF6 | 25 | S25S | tcC | tcT | 3 | 4 | B.1.177 | 0.00004 |
ORF6 | 25 | S25S | tcC | tcA | 1 | 4 | B.1.177 | 0.000013 |
ORF6 | 25 | S25P | Tcc | Ccc | 4 | 4 | B.1.2 | 0.000035 |
ORF6 | 25 | S25F | tCc | tTc | 4 | 4 | B.1.429 | 0.000094 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF6 | 25 | S25A | Tcc | Gcc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF6 | 25 | S25P | Tcc | Ccc | 3 | 4 | B.1.617.2 | 0.000011 |
ORF6 | 25 | S25P | TcC | CcA | 1 | 4 | B.1.617.2 | 0.000004 |
ORF6 | 25 | S25del | TCC | --- | 4 | 4 | P.1.17 | 0.000647 |
ORF6 | 25 | S25S | tcC | tcT | 3 | 3 | A.1 | 0.000846 |
ORF6 | 25 | S25R | TCC | CGT | 2 | 3 | All | 0 |
ORF6 | 25 | S25R | TCC | CGA | 1 | 3 | All | 0 |
ORF6 | 25 | S25F | tCc | tTc | 3 | 3 | AY.102 | 0.00008 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.12 | 0.000948 |
ORF6 | 25 | S25F | tCc | tTc | 3 | 3 | AY.16.1 | 0.00141 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.2 | 0.001068 |
ORF6 | 25 | S25P | Tcc | Ccc | 3 | 3 | AY.25 | 0.000018 |
ORF6 | 25 | S25C | tCc | tGc | 3 | 3 | AY.3 | 0.00003 |
ORF6 | 25 | S25S | tcC | tcT | 3 | 3 | AY.3.1 | 0.000256 |
ORF6 | 25 | S25H | TCc | CAc | 3 | 3 | AY.4 | 0.000005 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.46.6 | 0.000217 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.71 | 0.001425 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | AY.9 | 0.000203 |
ORF6 | 25 | S25P | Tcc | Ccc | 3 | 3 | B.1 | 0.000027 |
ORF6 | 25 | S25S | tcC | tcA | 3 | 3 | B.1.1 | 0.000054 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.177.10 | 0.002634 |
ORF6 | 25 | S25F | tCc | tTc | 3 | 3 | B.1.2 | 0.000026 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.214.2 | 0.001799 |
ORF6 | 25 | S25S | tcC | tcT | 3 | 3 | B.1.351.2 | 0.000908 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.617.1 | 0.000387 |
ORF6 | 25 | S25T | Tcc | Acc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF6 | 25 | S25T | Tcc | Acc | 3 | 3 | B.1.621.1 | 0.001517 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | B.1.637 | 0.000219 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | C.37 | 0.000348 |
ORF6 | 25 | S25F | tCc | tTc | 3 | 3 | P.1 | 0.000047 |
ORF6 | 25 | S25del | TCC | --- | 3 | 3 | P.3 | 0.004785 |
ORF6 | 25 | S25A | TcC | GcA | 2 | 2 | 0.111111 | |
ORF6 | 25 | S25P | Tcc | Ccc | 2 | 2 | 0.111111 | |
ORF6 | 25 | S25R | TCC | CGT | 2 | 2 | 0.111111 | |
ORF6 | 25 | S25S | TCc | AGc | 2 | 2 | 0.111111 | |
ORF6 | 25 | S25L | TCc | CTc | 1 | 2 | All | 0 |
ORF6 | 25 | S25L | tCC | tTA | 1 | 2 | All | 0 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | AY.102 | 0.000053 |
ORF6 | 25 | S25del1 | tCc | t-c | 1 | 2 | AY.103 | 0.000006 |
ORF6 | 25 | S25P | TcC | CcA | 1 | 2 | AY.103 | 0.000006 |
ORF6 | 25 | S25del1 | tcC | tc- | 1 | 2 | AY.103 | 0.000006 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 2 | AY.103 | 0.000006 |
ORF6 | 25 | S25F | tCc | tTc | 2 | 2 | AY.120 | 0.000074 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | AY.121 | 0.000271 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.23 | 0.000139 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.28 | 0.003781 |
ORF6 | 25 | S25F | tCc | tTc | 2 | 2 | AY.3 | 0.00002 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | AY.33 | 0.000134 |
ORF6 | 25 | S25F | tCc | tTc | 2 | 2 | AY.33 | 0.000134 |
ORF6 | 25 | S25F | tCc | tTc | 2 | 2 | AY.39 | 0.000049 |
ORF6 | 25 | S25del1 | tcC | tc- | 1 | 2 | AY.4 | 0.000002 |
ORF6 | 25 | S25del1 | Tcc | -cc | 1 | 2 | AY.4 | 0.000002 |
ORF6 | 25 | S25A | Tcc | Gcc | 2 | 2 | AY.4.2 | 0.000043 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.40 | 0.001929 |
ORF6 | 25 | S25A | Tcc | Gcc | 2 | 2 | AY.40 | 0.001929 |
ORF6 | 25 | S25P | Tcc | Ccc | 2 | 2 | AY.42 | 0.00008 |
ORF6 | 25 | S25del2 | tCC | t-- | 2 | 2 | AY.43 | 0.000009 |
ORF6 | 25 | S25A | Tcc | Gcc | 2 | 2 | AY.44 | 0.000012 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF6 | 25 | S25F | tCc | tTc | 2 | 2 | AY.5 | 0.000041 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.52 | 0.001629 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.53 | 0.000575 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | AY.59 | 0.001059 |
ORF6 | 25 | S25Y | tCc | tAc | 2 | 2 | AY.6 | 0.000082 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.70 | 0.000417 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.74 | 0.000231 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | AY.79 | 0.002421 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | AY.9.1 | 0.000167 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | AY.98.1 | 0.000097 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | AY.99.2 | 0.000184 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B | 0.000256 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.1.231 | 0.006192 |
ORF6 | 25 | S25F | tCc | tTc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.1.461 | 0.024096 |
ORF6 | 25 | S25del1 | tcC | tc- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF6 | 25 | S25del2 | tCC | t-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF6 | 25 | S25del2 | TCC | --N | 1 | 2 | B.1.1.7 | 0.000001 |
ORF6 | 25 | S25F | tCc | tTc | 2 | 2 | B.1.177 | 0.000026 |
ORF6 | 25 | S25Y | tCC | tAT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.195 | 0.01005 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.229 | 0.019417 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | B.1.258 | 0.000133 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.332 | 0.006993 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | B.1.36 | 0.000292 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.400 | 0.000858 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.438.1 | 0.000215 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.466.2 | 0.000782 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.524 | 0.002813 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.554 | 0.008811 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF6 | 25 | S25S | tcC | tcA | 1 | 2 | B.1.595 | 0.000261 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 2 | B.1.595 | 0.000261 |
ORF6 | 25 | S25S | tcC | tcT | 2 | 2 | B.1.596 | 0.000174 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | D.2 | 0.00015 |
ORF6 | 25 | S25P | Tcc | Ccc | 2 | 2 | P.1 | 0.000032 |
ORF6 | 25 | S25del | TCC | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF6 | 25 | S25Y | tCc | tAc | 1 | 1 | 0.055556 | |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | A.1 | 0.000282 |
ORF6 | 25 | S25A | Tcc | Gcc | 1 | 1 | A.1 | 0.000282 |
ORF6 | 25 | S25V | TCC | GTA | 1 | 1 | All | 0 |
ORF6 | 25 | S25N | TCc | AAc | 1 | 1 | All | 0 |
ORF6 | 25 | S25G | TCc | GGc | 1 | 1 | All | 0 |
ORF6 | 25 | S25X | tCC | tAA | 1 | 1 | All | 0 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AP.1 | 0.001502 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AU.1 | 0.001266 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.100 | 0.000046 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.100 | 0.000046 |
ORF6 | 25 | S25C | tCc | tGc | 1 | 1 | AY.100 | 0.000046 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF6 | 25 | S25A | Tcc | Gcc | 1 | 1 | AY.102 | 0.000027 |
ORF6 | 25 | S25del2 | tCC | t-- | 1 | 1 | AY.102 | 0.000027 |
ORF6 | 25 | S25A | Tcc | Gcc | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.110 | 0.000113 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.111 | 0.000183 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.116 | 0.000287 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.117 | 0.000085 |
ORF6 | 25 | S25S | tcC | tcG | 1 | 1 | AY.117 | 0.000085 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.118 | 0.000063 |
ORF6 | 25 | S25Y | tCc | tAc | 1 | 1 | AY.119 | 0.000035 |
ORF6 | 25 | S25N | TCc | AAc | 1 | 1 | AY.120.1 | 0.000321 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF6 | 25 | S25A | Tcc | Gcc | 1 | 1 | AY.121 | 0.000135 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.121 | 0.000135 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.13 | 0.000161 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.14 | 0.000088 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.16 | 0.00038 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.16 | 0.00038 |
ORF6 | 25 | S25A | Tcc | Gcc | 1 | 1 | AY.19 | 0.00114 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.23.1 | 0.000417 |
ORF6 | 25 | S25del1 | tCc | t-c | 1 | 1 | AY.25 | 0.000006 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | AY.26 | 0.000028 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.26 | 0.000028 |
ORF6 | 25 | S25S | tcC | tcA | 1 | 1 | AY.28 | 0.00189 |
ORF6 | 25 | S25A | Tcc | Gcc | 1 | 1 | AY.29 | 0.000016 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.29.1 | 0.000221 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | AY.3 | 0.00001 |
ORF6 | 25 | S25del2 | tCC | t-- | 1 | 1 | AY.3 | 0.00001 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.30 | 0.000396 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.34.1 | 0.00051 |
ORF6 | 25 | S25H | TCc | CAc | 1 | 1 | AY.35 | 0.000233 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.37 | 0.000316 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF6 | 25 | S25del2 | tCC | t-- | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.39.2 | 0.001541 |
ORF6 | 25 | S25Y | tCc | tAc | 1 | 1 | AY.4 | 0.000002 |
ORF6 | 25 | S25C | tCc | tGc | 1 | 1 | AY.4 | 0.000002 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.42 | 0.00004 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | AY.43 | 0.000004 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 25 | S25C | tCc | tGc | 1 | 1 | AY.45 | 0.000122 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.45 | 0.000122 |
ORF6 | 25 | S25del2 | tCC | t-- | 1 | 1 | AY.45 | 0.000122 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.46 | 0.000104 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | AY.46 | 0.000104 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.46.3 | 0.000934 |
ORF6 | 25 | S25P | TcC | CcT | 1 | 1 | AY.46.6 | 0.000072 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.47 | 0.000031 |
ORF6 | 25 | S25S | tcC | tcG | 1 | 1 | AY.5 | 0.000021 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.54 | 0.000095 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.57 | 0.000656 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.59 | 0.00053 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.63 | 0.000387 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.7.1 | 0.000113 |
ORF6 | 25 | S25H | TCC | CAT | 1 | 1 | AY.7.1 | 0.000113 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.71 | 0.000475 |
ORF6 | 25 | S25del1 | tCc | t-c | 1 | 1 | AY.71 | 0.000475 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.75 | 0.000056 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.79 | 0.001211 |
ORF6 | 25 | S25X | tCC | tAA | 1 | 1 | AY.82 | 0.001357 |
ORF6 | 25 | S25Y | tCc | tAc | 1 | 1 | AY.85 | 0.000427 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.88 | 0.000884 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | AY.88 | 0.000884 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.97 | 0.001701 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B | 0.000128 |
ORF6 | 25 | S25T | Tcc | Acc | 1 | 1 | B.1 | 0.000009 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | B.1 | 0.000009 |
ORF6 | 25 | S25Y | tCc | tAc | 1 | 1 | B.1 | 0.000009 |
ORF6 | 25 | S25del1 | tCc | t-c | 1 | 1 | B.1 | 0.000009 |
ORF6 | 25 | S25R | TCC | CGA | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 25 | S25Y | tCc | tAc | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | B.1.1.148 | 0.008772 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.241 | 0.00207 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF6 | 25 | S25del1 | tCc | t-c | 1 | 1 | B.1.1.294 | 0.001266 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.307 | 0.002532 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.316 | 0.000925 |
ORF6 | 25 | S25Y | tCc | tAc | 1 | 1 | B.1.1.322 | 0.008772 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.38 | 0.058824 |
ORF6 | 25 | S25del2 | tCC | t-- | 1 | 1 | B.1.1.397 | 0.002252 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF6 | 25 | S25V | TCC | GTA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF6 | 25 | S25L | TCc | CTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 25 | S25A | Tcc | Gcc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.8 | 0.003584 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.1.83 | 0.00271 |
ORF6 | 25 | S25del1 | tCc | t-c | 1 | 1 | B.1.110.3 | 0.000718 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.131 | 0.008772 |
ORF6 | 25 | S25G | TCc | GGc | 1 | 1 | B.1.157 | 0.002985 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | B.1.160 | 0.000031 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.177 | 0.000013 |
ORF6 | 25 | S25Y | tCc | tAc | 1 | 1 | B.1.177 | 0.000013 |
ORF6 | 25 | S25H | TCc | CAc | 1 | 1 | B.1.177 | 0.000013 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF6 | 25 | S25L | tCC | tTA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF6 | 25 | S25del2 | tCC | t-- | 1 | 1 | B.1.221 | 0.000071 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.232 | 0.000537 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.239 | 0.001221 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.260 | 0.003344 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.349 | 0.000715 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | B.1.351 | 0.00003 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.36.24 | 0.006173 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.389 | 0.001002 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.391 | 0.001127 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.396 | 0.000706 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.404 | 0.001302 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.429.1 | 0.012048 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.462 | 0.007246 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.469 | 0.00361 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.470 | 0.001404 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.497 | 0.000315 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.525 | 0.000113 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.565 | 0.00081 |
ORF6 | 25 | S25S | tcC | tcA | 1 | 1 | B.1.576 | 0.000907 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.599 | 0.00365 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF6 | 25 | S25H | TCc | CAc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF6 | 25 | S25del2 | tCC | t-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | B.1.625 | 0.002353 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.637 | 0.000073 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.1.9.3 | 0.038462 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | B.1.9.4 | 0.006135 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | B.31 | 0.003731 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | C.2.1 | 0.006667 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | C.32 | 0.023256 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | C.36.3.1 | 0.002717 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | N.10 | 0.029412 |
ORF6 | 25 | S25del2 | tCC | t-- | 1 | 1 | P.1 | 0.000016 |
ORF6 | 25 | S25C | tCc | tGc | 1 | 1 | P.1 | 0.000016 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF6 | 25 | S25F | tCc | tTc | 1 | 1 | P.1.14 | 0.000048 |
ORF6 | 25 | S25S | tcC | tcT | 1 | 1 | P.1.14 | 0.000048 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | P.1.14 | 0.000048 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF6 | 25 | S25P | Tcc | Ccc | 1 | 1 | P.1.17 | 0.000162 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF6 | 25 | S25del | TCC | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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