CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 24 | V24del | del | GTT | --- | 2575 | 2575 | 1 | 27271-27273 | |
ORF6 | 24 | V24F | nonsyn | Gtt | Ttt | 2322 | 2317 | 0.997847 | 27271-27273 | |
ORF6 | 24 | V24F | nonsyn | GtT | TtC | 2322 | 5 | 0.00215332 | 27271-27273 | |
ORF6 | 24 | V24I | nonsyn | Gtt | Att | 451 | 447 | 0.991131 | 27271-27273 | |
ORF6 | 24 | V24I | nonsyn | GtT | AtA | 451 | 3 | 0.00665188 | 27271-27273 | |
ORF6 | 24 | V24I | nonsyn | GtT | AtC | 451 | 1 | 0.00221729 | 27271-27273 | |
ORF6 | 24 | V24V | syn | gtT | gtC | 182 | 157 | 0.862637 | 27271-27273 | |
ORF6 | 24 | V24V | syn | gtT | gtA | 182 | 14 | 0.0769231 | 27271-27273 | |
ORF6 | 24 | V24V | syn | gtT | gtG | 182 | 11 | 0.0604396 | 27271-27273 | |
ORF6 | 24 | V24A | nonsyn | gTt | gCt | 94 | 94 | 1 | 27271-27273 | |
ORF6 | 24 | V24L | nonsyn | Gtt | Ctt | 28 | 28 | 1 | 27271-27273 | |
ORF6 | 24 | V24del1 | del | gTt | g-t | 12 | 6 | 0.5 | 27271-27273 | |
ORF6 | 24 | V24del1 | del | Gtt | -tt | 12 | 5 | 0.416667 | 27271-27273 | |
ORF6 | 24 | V24del1 | del | GTT | -NN | 12 | 1 | 0.0833333 | 27271-27273 | |
ORF6 | 24 | V24del2 | del | gTT | g-- | 10 | 6 | 0.6 | 27271-27273 | |
ORF6 | 24 | V24del2 | del | GTt | --t | 10 | 1 | 0.1 | 27271-27273 | |
ORF6 | 24 | V24del2 | del | GTT | --A | 10 | 1 | 0.1 | 27271-27273 | |
ORF6 | 24 | V24del2 | del | GTT | --N | 10 | 1 | 0.1 | 27271-27273 | |
ORF6 | 24 | V24del2 | del | GTT | A-- | 10 | 1 | 0.1 | 27271-27273 | |
ORF6 | 24 | V24G | nonsyn | gTt | gGt | 9 | 9 | 1 | 27271-27273 | |
ORF6 | 24 | V24D | nonsyn | gTt | gAt | 8 | 8 | 1 | 27271-27273 | |
ORF6 | 24 | V24N | nonsyn | GTt | AAt | 7 | 6 | 0.857143 | 27271-27273 | |
ORF6 | 24 | V24S | nonsyn | GTt | AGt | 7 | 6 | 0.857143 | 27271-27273 | |
ORF6 | 24 | V24S | nonsyn | GTt | TCt | 7 | 1 | 0.142857 | 27271-27273 | |
ORF6 | 24 | V24N | nonsyn | GTT | AAC | 7 | 1 | 0.142857 | 27271-27273 | |
ORF6 | 24 | V24P | nonsyn | GTt | CCt | 3 | 3 | 1 | 27271-27273 | |
ORF6 | 24 | V24Y | nonsyn | GTT | TAC | 1 | 1 | 1 | 27271-27273 | |
ORF6 | 24 | V24T | nonsyn | GTt | ACt | 1 | 1 | 1 | 27271-27273 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 24 | V24del | GTT | --- | 2575 | 2575 | All | 0.000492 |
ORF6 | 24 | V24F | Gtt | Ttt | 2317 | 2322 | All | 0.000443 |
ORF6 | 24 | V24F | GtT | TtC | 5 | 2322 | All | 0.000001 |
ORF6 | 24 | V24F | Gtt | Ttt | 497 | 497 | AY.43 | 0.002202 |
ORF6 | 24 | V24I | Gtt | Att | 447 | 451 | All | 0.000085 |
ORF6 | 24 | V24I | GtT | AtA | 3 | 451 | All | 0.000001 |
ORF6 | 24 | V24I | GtT | AtC | 1 | 451 | All | 0 |
ORF6 | 24 | V24del | GTT | --- | 426 | 426 | AY.4 | 0.000663 |
ORF6 | 24 | V24F | Gtt | Ttt | 413 | 413 | AY.4 | 0.000643 |
ORF6 | 24 | V24del | GTT | --- | 377 | 377 | B.1.1.7 | 0.000337 |
ORF6 | 24 | V24F | Gtt | Ttt | 248 | 248 | B.1.177 | 0.003266 |
ORF6 | 24 | V24F | Gtt | Ttt | 222 | 224 | B.1.1.7 | 0.000199 |
ORF6 | 24 | V24F | GtT | TtC | 2 | 224 | B.1.1.7 | 0.000002 |
ORF6 | 24 | V24F | Gtt | Ttt | 208 | 208 | B.1.617.2 | 0.000783 |
ORF6 | 24 | V24I | Gtt | Att | 194 | 194 | AY.20 | 0.00754 |
ORF6 | 24 | V24V | gtT | gtC | 157 | 182 | All | 0.00003 |
ORF6 | 24 | V24V | gtT | gtA | 14 | 182 | All | 0.000003 |
ORF6 | 24 | V24V | gtT | gtG | 11 | 182 | All | 0.000002 |
ORF6 | 24 | V24F | Gtt | Ttt | 121 | 121 | AY.103 | 0.000751 |
ORF6 | 24 | V24del | GTT | --- | 105 | 105 | AY.43 | 0.000465 |
ORF6 | 24 | V24del | GTT | --- | 102 | 102 | B.1.617.2 | 0.000384 |
ORF6 | 24 | V24del | GTT | --- | 99 | 99 | AY.44 | 0.000603 |
ORF6 | 24 | V24V | gtT | gtC | 96 | 96 | B.1.1.7 | 0.000086 |
ORF6 | 24 | V24A | gTt | gCt | 94 | 94 | All | 0.000018 |
ORF6 | 24 | V24del | GTT | --- | 91 | 91 | AY.25 | 0.000547 |
ORF6 | 24 | V24del | GTT | --- | 89 | 89 | AY.4.2 | 0.00193 |
ORF6 | 24 | V24F | Gtt | Ttt | 75 | 75 | B.1.526 | 0.001763 |
ORF6 | 24 | V24del | GTT | --- | 63 | 63 | AY.103 | 0.000391 |
ORF6 | 24 | V24del | GTT | --- | 63 | 63 | B.1 | 0.000577 |
ORF6 | 24 | V24F | Gtt | Ttt | 60 | 60 | AY.44 | 0.000365 |
ORF6 | 24 | V24del | GTT | --- | 59 | 59 | AY.47 | 0.001835 |
ORF6 | 24 | V24del | GTT | --- | 56 | 56 | AY.3 | 0.000557 |
ORF6 | 24 | V24del | GTT | --- | 51 | 51 | AY.120 | 0.001896 |
ORF6 | 24 | V24del | GTT | --- | 49 | 49 | B.1.2 | 0.000431 |
ORF6 | 24 | V24del | GTT | --- | 41 | 41 | B.1.616 | 1 |
ORF6 | 24 | V24del | GTT | --- | 37 | 37 | P.1 | 0.000583 |
ORF6 | 24 | V24del | GTT | --- | 36 | 36 | AY.39 | 0.00089 |
ORF6 | 24 | V24del | GTT | --- | 32 | 32 | N.8 | 1 |
ORF6 | 24 | V24A | gTt | gCt | 31 | 31 | B.1.1.7 | 0.000028 |
ORF6 | 24 | V24I | Gtt | Att | 29 | 29 | C.37 | 0.003366 |
ORF6 | 24 | V24L | Gtt | Ctt | 28 | 28 | All | 0.000005 |
ORF6 | 24 | V24I | Gtt | Att | 26 | 26 | AY.103 | 0.000161 |
ORF6 | 24 | V24I | Gtt | Att | 25 | 26 | B.1.1.7 | 0.000022 |
ORF6 | 24 | V24I | GtT | AtC | 1 | 26 | B.1.1.7 | 0.000001 |
ORF6 | 24 | V24del | GTT | --- | 26 | 26 | B.1.526 | 0.000611 |
ORF6 | 24 | V24F | Gtt | Ttt | 25 | 25 | AY.29 | 0.000394 |
ORF6 | 24 | V24I | Gtt | Att | 25 | 25 | AY.3 | 0.000249 |
ORF6 | 24 | V24del | GTT | --- | 24 | 24 | AY.5 | 0.000496 |
ORF6 | 24 | V24F | Gtt | Ttt | 21 | 24 | B.1.177.21 | 0.001606 |
ORF6 | 24 | V24F | GtT | TtC | 3 | 24 | B.1.177.21 | 0.000229 |
ORF6 | 24 | V24del | GTT | --- | 23 | 23 | AY.111 | 0.004212 |
ORF6 | 24 | V24del | GTT | --- | 23 | 23 | AY.26 | 0.000651 |
ORF6 | 24 | V24I | Gtt | Att | 22 | 22 | AY.4 | 0.000034 |
ORF6 | 24 | V24F | Gtt | Ttt | 22 | 22 | P.1 | 0.000347 |
ORF6 | 24 | V24del | GTT | --- | 21 | 21 | AY.84 | 0.009186 |
ORF6 | 24 | V24I | Gtt | Att | 20 | 20 | AY.6 | 0.000823 |
ORF6 | 24 | V24del | GTT | --- | 20 | 20 | B.1.108 | 0.116279 |
ORF6 | 24 | V24I | Gtt | Att | 20 | 20 | B.1.177.21 | 0.001529 |
ORF6 | 24 | V24F | Gtt | Ttt | 19 | 19 | AY.118 | 0.00119 |
ORF6 | 24 | V24V | gtT | gtC | 19 | 19 | AY.36 | 0.002816 |
ORF6 | 24 | V24I | Gtt | Att | 19 | 19 | AY.44 | 0.000116 |
ORF6 | 24 | V24F | Gtt | Ttt | 18 | 18 | AY.25 | 0.000108 |
ORF6 | 24 | V24F | Gtt | Ttt | 18 | 18 | AY.3 | 0.000179 |
ORF6 | 24 | V24F | Gtt | Ttt | 18 | 18 | B.1.429 | 0.000424 |
ORF6 | 24 | V24del | GTT | --- | 17 | 17 | AY.13 | 0.002737 |
ORF6 | 24 | V24F | Gtt | Ttt | 17 | 17 | AY.39 | 0.00042 |
ORF6 | 24 | V24F | Gtt | Ttt | 17 | 17 | B.1 | 0.000156 |
ORF6 | 24 | V24del | GTT | --- | 17 | 17 | B.1.177.21 | 0.0013 |
ORF6 | 24 | V24F | Gtt | Ttt | 17 | 17 | B.1.621 | 0.001505 |
ORF6 | 24 | V24F | Gtt | Ttt | 17 | 17 | Q.1 | 0.002148 |
ORF6 | 24 | V24F | Gtt | Ttt | 16 | 16 | AY.102 | 0.000424 |
ORF6 | 24 | V24del | GTT | --- | 16 | 16 | AY.118 | 0.001002 |
ORF6 | 24 | V24del | GTT | --- | 16 | 16 | AY.42 | 0.000644 |
ORF6 | 24 | V24del | GTT | --- | 15 | 15 | AY.36 | 0.002223 |
ORF6 | 24 | V24del | GTT | --- | 15 | 15 | AY.75 | 0.00084 |
ORF6 | 24 | V24del | GTT | --- | 14 | 14 | AY.54 | 0.001335 |
ORF6 | 24 | V24F | Gtt | Ttt | 13 | 13 | AY.100 | 0.000598 |
ORF6 | 24 | V24del | GTT | --- | 13 | 13 | AY.85 | 0.005553 |
ORF6 | 24 | V24del | GTT | --- | 13 | 13 | AY.90 | 0.008898 |
ORF6 | 24 | V24del | GTT | --- | 13 | 13 | B.1.105 | 0.125 |
ORF6 | 24 | V24del | GTT | --- | 13 | 13 | B.1.429 | 0.000306 |
ORF6 | 24 | V24del1 | gTt | g-t | 6 | 12 | All | 0.000001 |
ORF6 | 24 | V24del1 | Gtt | -tt | 5 | 12 | All | 0.000001 |
ORF6 | 24 | V24del1 | GTT | -NN | 1 | 12 | All | 0 |
ORF6 | 24 | V24V | gtT | gtC | 12 | 12 | AY.4 | 0.000019 |
ORF6 | 24 | V24del | GTT | --- | 12 | 12 | B.1.36.36 | 0.007225 |
ORF6 | 24 | V24V | gtT | gtA | 6 | 11 | AY.103 | 0.000037 |
ORF6 | 24 | V24V | gtT | gtC | 3 | 11 | AY.103 | 0.000019 |
ORF6 | 24 | V24V | gtT | gtG | 2 | 11 | AY.103 | 0.000012 |
ORF6 | 24 | V24del | GTT | --- | 11 | 11 | AY.113 | 0.001566 |
ORF6 | 24 | V24del | GTT | --- | 11 | 11 | AY.119 | 0.000388 |
ORF6 | 24 | V24del | GTT | --- | 11 | 11 | AY.29 | 0.000174 |
ORF6 | 24 | V24del | GTT | --- | 11 | 11 | AY.39.1 | 0.000436 |
ORF6 | 24 | V24del | GTT | --- | 11 | 11 | AY.9.2 | 0.000404 |
ORF6 | 24 | V24del2 | gTT | g-- | 6 | 10 | All | 0.000001 |
ORF6 | 24 | V24del2 | GTt | --t | 1 | 10 | All | 0 |
ORF6 | 24 | V24del2 | GTT | A-- | 1 | 10 | All | 0 |
ORF6 | 24 | V24del2 | GTT | --A | 1 | 10 | All | 0 |
ORF6 | 24 | V24del2 | GTT | --N | 1 | 10 | All | 0 |
ORF6 | 24 | V24del | GTT | --- | 10 | 10 | AY.14 | 0.00088 |
ORF6 | 24 | V24F | Gtt | Ttt | 10 | 10 | AY.20 | 0.000389 |
ORF6 | 24 | V24del | GTT | --- | 10 | 10 | AY.20 | 0.000389 |
ORF6 | 24 | V24A | gTt | gCt | 10 | 10 | AY.25 | 0.00006 |
ORF6 | 24 | V24del | GTT | --- | 10 | 10 | AY.46 | 0.001041 |
ORF6 | 24 | V24G | gTt | gGt | 9 | 9 | All | 0.000002 |
ORF6 | 24 | V24del | GTT | --- | 9 | 9 | AY.100 | 0.000414 |
ORF6 | 24 | V24del | GTT | --- | 9 | 9 | AY.106 | 0.003014 |
ORF6 | 24 | V24F | Gtt | Ttt | 9 | 9 | AY.23 | 0.000628 |
ORF6 | 24 | V24del | GTT | --- | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF6 | 24 | V24A | gTt | gCt | 9 | 9 | AY.43 | 0.00004 |
ORF6 | 24 | V24A | gTt | gCt | 9 | 9 | AY.44 | 0.000055 |
ORF6 | 24 | V24del | GTT | --- | 9 | 9 | AY.45 | 0.001095 |
ORF6 | 24 | V24F | Gtt | Ttt | 9 | 9 | B.1.1.37 | 0.001736 |
ORF6 | 24 | V24A | gTt | gCt | 9 | 9 | B.1.617.2 | 0.000034 |
ORF6 | 24 | V24V | gtT | gtG | 4 | 9 | B.1.617.2 | 0.000015 |
ORF6 | 24 | V24V | gtT | gtA | 4 | 9 | B.1.617.2 | 0.000015 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 9 | B.1.617.2 | 0.000004 |
ORF6 | 24 | V24D | gTt | gAt | 8 | 8 | All | 0.000002 |
ORF6 | 24 | V24F | Gtt | Ttt | 8 | 8 | AY.3.1 | 0.000682 |
ORF6 | 24 | V24F | Gtt | Ttt | 8 | 8 | AY.46 | 0.000833 |
ORF6 | 24 | V24del | GTT | --- | 8 | 8 | AY.46.5 | 0.001587 |
ORF6 | 24 | V24F | Gtt | Ttt | 8 | 8 | AY.75.1 | 0.001442 |
ORF6 | 24 | V24del | GTT | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF6 | 24 | V24del | GTT | --- | 8 | 8 | B.1.240 | 0.001725 |
ORF6 | 24 | V24F | Gtt | Ttt | 8 | 8 | B.1.617.1 | 0.001032 |
ORF6 | 24 | V24L | Gtt | Ctt | 8 | 8 | B.1.617.2 | 0.00003 |
ORF6 | 24 | V24S | GTt | AGt | 6 | 7 | All | 0.000001 |
ORF6 | 24 | V24N | GTt | AAt | 6 | 7 | All | 0.000001 |
ORF6 | 24 | V24N | GTT | AAC | 1 | 7 | All | 0 |
ORF6 | 24 | V24S | GTt | TCt | 1 | 7 | All | 0 |
ORF6 | 24 | V24del | GTT | --- | 7 | 7 | AY.102 | 0.000186 |
ORF6 | 24 | V24F | Gtt | Ttt | 7 | 7 | B.1.1 | 0.000127 |
ORF6 | 24 | V24del | GTT | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF6 | 24 | V24I | Gtt | Att | 6 | 7 | B.1.1 | 0.000109 |
ORF6 | 24 | V24I | GtT | AtA | 1 | 7 | B.1.1 | 0.000018 |
ORF6 | 24 | V24N | GTt | AAt | 6 | 7 | B.1.177.21 | 0.000459 |
ORF6 | 24 | V24N | GTT | AAC | 1 | 7 | B.1.177.21 | 0.000076 |
ORF6 | 24 | V24del | GTT | --- | 7 | 7 | B.1.234 | 0.000924 |
ORF6 | 24 | V24del | GTT | --- | 7 | 7 | B.1.351 | 0.000208 |
ORF6 | 24 | V24del | GTT | --- | 7 | 7 | B.1.351.2 | 0.002118 |
ORF6 | 24 | V24del | GTT | --- | 7 | 7 | B.1.621 | 0.00062 |
ORF6 | 24 | V24del | GTT | --- | 6 | 6 | AY.27 | 0.000388 |
ORF6 | 24 | V24del | GTT | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF6 | 24 | V24del | GTT | --- | 6 | 6 | AY.6 | 0.000247 |
ORF6 | 24 | V24del | GTT | --- | 6 | 6 | AY.61 | 0.000629 |
ORF6 | 24 | V24F | Gtt | Ttt | 6 | 6 | AY.98 | 0.000474 |
ORF6 | 24 | V24del | GTT | --- | 6 | 6 | AY.98.1 | 0.000291 |
ORF6 | 24 | V24del | GTT | --- | 6 | 6 | B.1.1.214 | 0.000333 |
ORF6 | 24 | V24del | GTT | --- | 6 | 6 | B.1.1.222 | 0.001224 |
ORF6 | 24 | V24G | gTt | gGt | 6 | 6 | B.1.177.21 | 0.000459 |
ORF6 | 24 | V24del | GTT | --- | 6 | 6 | B.1.258 | 0.000399 |
ORF6 | 24 | V24A | gTt | gCt | 5 | 5 | AY.102 | 0.000133 |
ORF6 | 24 | V24del | GTT | --- | 5 | 5 | AY.33 | 0.000334 |
ORF6 | 24 | V24del | GTT | --- | 5 | 5 | AY.34 | 0.000485 |
ORF6 | 24 | V24F | Gtt | Ttt | 5 | 5 | AY.42 | 0.000201 |
ORF6 | 24 | V24del | GTT | --- | 5 | 5 | AY.98 | 0.000395 |
ORF6 | 24 | V24F | Gtt | Ttt | 5 | 5 | AY.98.1 | 0.000242 |
ORF6 | 24 | V24del | GTT | --- | 5 | 5 | B.1.1.318 | 0.001509 |
ORF6 | 24 | V24S | GTt | AGt | 4 | 5 | B.1.177.21 | 0.000306 |
ORF6 | 24 | V24S | GTt | TCt | 1 | 5 | B.1.177.21 | 0.000076 |
ORF6 | 24 | V24del | GTT | --- | 5 | 5 | B.1.311 | 0.001373 |
ORF6 | 24 | V24I | Gtt | Att | 5 | 5 | B.1.36.38 | 0.00821 |
ORF6 | 24 | V24del | GTT | --- | 5 | 5 | B.1.427 | 0.000252 |
ORF6 | 24 | V24F | Gtt | Ttt | 5 | 5 | B.1.596 | 0.000436 |
ORF6 | 24 | V24del | GTT | --- | 5 | 5 | P.1.10 | 0.001347 |
ORF6 | 24 | V24del | GTT | --- | 5 | 5 | R.1 | 0.00045 |
ORF6 | 24 | V24del | GTT | --- | 4 | 4 | A | 0.001548 |
ORF6 | 24 | V24del | GTT | --- | 4 | 4 | AU.2 | 0.009685 |
ORF6 | 24 | V24del | GTT | --- | 4 | 4 | AY.110 | 0.000451 |
ORF6 | 24 | V24F | Gtt | Ttt | 4 | 4 | AY.119 | 0.000141 |
ORF6 | 24 | V24I | Gtt | Att | 4 | 4 | AY.25 | 0.000024 |
ORF6 | 24 | V24V | gtT | gtC | 3 | 4 | AY.25 | 0.000018 |
ORF6 | 24 | V24V | gtT | gtA | 1 | 4 | AY.25 | 0.000006 |
ORF6 | 24 | V24F | Gtt | Ttt | 4 | 4 | AY.26 | 0.000113 |
ORF6 | 24 | V24I | Gtt | Att | 4 | 4 | AY.26 | 0.000113 |
ORF6 | 24 | V24L | Gtt | Ctt | 4 | 4 | AY.4 | 0.000006 |
ORF6 | 24 | V24I | Gtt | Att | 4 | 4 | AY.4.2 | 0.000087 |
ORF6 | 24 | V24V | gtT | gtC | 4 | 4 | AY.43 | 0.000018 |
ORF6 | 24 | V24I | Gtt | Att | 4 | 4 | AY.5 | 0.000083 |
ORF6 | 24 | V24del | GTT | --- | 4 | 4 | AY.68 | 0.001095 |
ORF6 | 24 | V24del | GTT | --- | 4 | 4 | AY.9.1 | 0.000335 |
ORF6 | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.1.33 | 0.001684 |
ORF6 | 24 | V24del | GTT | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF6 | 24 | V24del1 | Gtt | -tt | 3 | 4 | B.1.177.21 | 0.000229 |
ORF6 | 24 | V24del1 | GTT | -NN | 1 | 4 | B.1.177.21 | 0.000076 |
ORF6 | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.177.4 | 0.000844 |
ORF6 | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.2 | 0.000035 |
ORF6 | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.351.3 | 0.003506 |
ORF6 | 24 | V24del | GTT | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF6 | 24 | V24I | Gtt | Att | 4 | 4 | B.1.617.2 | 0.000015 |
ORF6 | 24 | V24F | Gtt | Ttt | 4 | 4 | P.1.14 | 0.000191 |
ORF6 | 24 | V24del | GTT | --- | 4 | 4 | P.1.17 | 0.000647 |
ORF6 | 24 | V24F | Gtt | Ttt | 4 | 4 | P.2 | 0.000747 |
ORF6 | 24 | V24I | Gtt | Att | 4 | 4 | P.2 | 0.000747 |
ORF6 | 24 | V24I | Gtt | Att | 4 | 4 | Q.2 | 0.002454 |
ORF6 | 24 | V24P | GTt | CCt | 3 | 3 | All | 0.000001 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | AY.12 | 0.000948 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | AY.2 | 0.001068 |
ORF6 | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.27 | 0.000194 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF6 | 24 | V24L | Gtt | Ctt | 3 | 3 | AY.43 | 0.000013 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | AY.46.6 | 0.000217 |
ORF6 | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.5 | 0.000062 |
ORF6 | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.53 | 0.000863 |
ORF6 | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.54 | 0.000286 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | AY.71 | 0.001425 |
ORF6 | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.75 | 0.000168 |
ORF6 | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.9 | 0.000203 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | AY.9 | 0.000203 |
ORF6 | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.9.2 | 0.00011 |
ORF6 | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.93 | 0.000819 |
ORF6 | 24 | V24I | Gtt | Att | 3 | 3 | B.1 | 0.000027 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | B.1.177.10 | 0.002634 |
ORF6 | 24 | V24D | gTt | gAt | 3 | 3 | B.1.177.21 | 0.000229 |
ORF6 | 24 | V24del2 | GTT | --A | 1 | 3 | B.1.177.21 | 0.000076 |
ORF6 | 24 | V24del2 | GTT | A-- | 1 | 3 | B.1.177.21 | 0.000076 |
ORF6 | 24 | V24del2 | GTt | --t | 1 | 3 | B.1.177.21 | 0.000076 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | B.1.214.2 | 0.001799 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | B.1.617.1 | 0.000387 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | B.1.637 | 0.000219 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | C.37 | 0.000348 |
ORF6 | 24 | V24del | GTT | --- | 3 | 3 | P.3 | 0.004785 |
ORF6 | 24 | V24V | gtT | gtA | 2 | 2 | 0.111111 | |
ORF6 | 24 | V24I | GtT | AtA | 2 | 2 | 0.111111 | |
ORF6 | 24 | V24A | gTt | gCt | 2 | 2 | 0.111111 | |
ORF6 | 24 | V24L | Gtt | Ctt | 2 | 2 | 0.111111 | |
ORF6 | 24 | V24I | Gtt | Att | 2 | 2 | AY.120.1 | 0.000642 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF6 | 24 | V24del2 | gTT | g-- | 2 | 2 | AY.20 | 0.000078 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 2 | AY.20 | 0.000039 |
ORF6 | 24 | V24V | gtT | gtG | 1 | 2 | AY.20 | 0.000039 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.23 | 0.000139 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.28 | 0.003781 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.33 | 0.000134 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.36 | 0.000296 |
ORF6 | 24 | V24A | gTt | gCt | 2 | 2 | AY.4 | 0.000003 |
ORF6 | 24 | V24del1 | Gtt | -tt | 2 | 2 | AY.4 | 0.000003 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.4.2 | 0.000043 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.40 | 0.001929 |
ORF6 | 24 | V24A | gTt | gCt | 2 | 2 | AY.42 | 0.00008 |
ORF6 | 24 | V24I | Gtt | Att | 2 | 2 | AY.43 | 0.000009 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.46.2 | 0.001271 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.52 | 0.001629 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.53 | 0.000575 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.70 | 0.000417 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.74 | 0.000231 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.79 | 0.002421 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.83 | 0.003448 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.9.1 | 0.000167 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.92 | 0.000575 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.99 | 0.002099 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | AY.99.2 | 0.000184 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B | 0.000256 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | B | 0.000256 |
ORF6 | 24 | V24A | gTt | gCt | 2 | 2 | B | 0.000256 |
ORF6 | 24 | V24A | gTt | gCt | 2 | 2 | B.1 | 0.000018 |
ORF6 | 24 | V24V | gtT | gtC | 2 | 2 | B.1 | 0.000018 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.1.231 | 0.006192 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.1.241 | 0.004141 |
ORF6 | 24 | V24D | gTt | gAt | 2 | 2 | B.1.1.298 | 0.001724 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.1.461 | 0.024096 |
ORF6 | 24 | V24I | Gtt | Att | 2 | 2 | B.1.1.519 | 0.000079 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF6 | 24 | V24S | GTt | AGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF6 | 24 | V24V | gtT | gtC | 2 | 2 | B.1.146 | 0.008475 |
ORF6 | 24 | V24I | Gtt | Att | 2 | 2 | B.1.177 | 0.000026 |
ORF6 | 24 | V24V | gtT | gtC | 2 | 2 | B.1.177.21 | 0.000153 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.195 | 0.01005 |
ORF6 | 24 | V24V | gtT | gtC | 2 | 2 | B.1.2 | 0.000018 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.229 | 0.019417 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.311 | 0.000549 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.332 | 0.006993 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.351 | 0.000059 |
ORF6 | 24 | V24I | Gtt | Att | 2 | 2 | B.1.36.17 | 0.000988 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.400 | 0.000858 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.438.1 | 0.000215 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.466.2 | 0.000782 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.524 | 0.002813 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.525 | 0.000226 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.554 | 0.008811 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 2 | B.6 | 0.00091 |
ORF6 | 24 | V24V | gtT | gtG | 1 | 2 | B.6 | 0.00091 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | D.2 | 0.00015 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | D.2 | 0.00015 |
ORF6 | 24 | V24I | Gtt | Att | 2 | 2 | P.1 | 0.000032 |
ORF6 | 24 | V24del | GTT | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF6 | 24 | V24F | Gtt | Ttt | 2 | 2 | P.1.8 | 0.009569 |
ORF6 | 24 | V24D | gTt | gAt | 1 | 1 | 0.055556 | |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | A.1 | 0.000282 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | A.3 | 0.002096 |
ORF6 | 24 | V24T | GTt | ACt | 1 | 1 | All | 0 |
ORF6 | 24 | V24Y | GTT | TAC | 1 | 1 | All | 0 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AP.1 | 0.001502 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AU.1 | 0.001266 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.1 | 0.000396 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 1 | AY.10 | 0.00053 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | AY.100 | 0.000046 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.102 | 0.000027 |
ORF6 | 24 | V24del2 | gTT | g-- | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 24 | V24del1 | gTt | g-t | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | AY.104 | 0.001984 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.110 | 0.000113 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.113 | 0.000142 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | AY.116 | 0.000287 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.117 | 0.000085 |
ORF6 | 24 | V24del2 | GTT | --N | 1 | 1 | AY.119 | 0.000035 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | AY.12 | 0.000316 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.12 | 0.000316 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.120 | 0.000037 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 1 | AY.120 | 0.000037 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.120.2 | 0.001285 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | AY.121 | 0.000135 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.14 | 0.000088 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.16 | 0.00038 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | AY.2 | 0.000356 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | AY.23 | 0.00007 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | AY.26 | 0.000028 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | AY.29 | 0.000016 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.29.1 | 0.000221 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | AY.3 | 0.00001 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 1 | AY.3 | 0.00001 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.30 | 0.000396 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.33 | 0.000067 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.34 | 0.000097 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | AY.34 | 0.000097 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | AY.36 | 0.000148 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.37 | 0.000316 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF6 | 24 | V24G | gTt | gGt | 1 | 1 | AY.42 | 0.00004 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.46.3 | 0.000934 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF6 | 24 | V24P | GTt | CCt | 1 | 1 | AY.46.6 | 0.000072 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.48 | 0.000465 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.5.3 | 0.000337 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.5.4 | 0.000277 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.55 | 0.000917 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.57 | 0.000656 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.57 | 0.000656 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | AY.61 | 0.000105 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.61 | 0.000105 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.63 | 0.000387 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.65 | 0.000533 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.68 | 0.000274 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.68 | 0.000274 |
ORF6 | 24 | V24P | GTt | CCt | 1 | 1 | AY.7.1 | 0.000113 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.70 | 0.000209 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF6 | 24 | V24del2 | gTT | g-- | 1 | 1 | AY.75 | 0.000056 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.88 | 0.000884 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.95 | 0.000761 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.97 | 0.001701 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF6 | 24 | V24del1 | gTt | g-t | 1 | 1 | B.1 | 0.000009 |
ORF6 | 24 | V24G | gTt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF6 | 24 | V24Y | GTT | TAC | 1 | 1 | B.1.1.153 | 0.001095 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.241 | 0.00207 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF6 | 24 | V24V | gtT | gtA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.307 | 0.002532 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.316 | 0.000925 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.38 | 0.058824 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.458 | 0.041667 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF6 | 24 | V24T | GTt | ACt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF6 | 24 | V24V | gtT | gtG | 1 | 1 | B.1.1.525 | 0.005464 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.74 | 0.00431 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.8 | 0.003584 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.83 | 0.00271 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.131 | 0.008772 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 1 | B.1.139 | 0.000733 |
ORF6 | 24 | V24D | gTt | gAt | 1 | 1 | B.1.157 | 0.002985 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.160 | 0.000031 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | B.1.160 | 0.000031 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.5 | 0.001242 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | B.1.2 | 0.000009 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.219 | 0.009434 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.232 | 0.000537 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.239 | 0.001221 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.260 | 0.003344 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.3 | 0.002618 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.324 | 0.001605 |
ORF6 | 24 | V24L | Gtt | Ctt | 1 | 1 | B.1.336 | 0.002439 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 1 | B.1.351 | 0.00003 |
ORF6 | 24 | V24del1 | gTt | g-t | 1 | 1 | B.1.351.5 | 0.0006 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.36.24 | 0.006173 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF6 | 24 | V24G | gTt | gGt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | B.1.362 | 0.001541 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 1 | B.1.369 | 0.000285 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | B.1.369 | 0.000285 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.391 | 0.001127 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.396 | 0.000706 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.396 | 0.000706 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.400 | 0.000429 |
ORF6 | 24 | V24P | GTt | CCt | 1 | 1 | B.1.416 | 0.001269 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.427 | 0.00005 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | B.1.429 | 0.000024 |
ORF6 | 24 | V24del1 | gTt | g-t | 1 | 1 | B.1.429 | 0.000024 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.429.1 | 0.012048 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | B.1.456 | 0.003268 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.462 | 0.007246 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.469 | 0.00361 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 1 | B.1.497 | 0.000315 |
ORF6 | 24 | V24A | gTt | gCt | 1 | 1 | B.1.503 | 0.002488 |
ORF6 | 24 | V24del1 | gTt | g-t | 1 | 1 | B.1.509 | 0.000866 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.521 | 0.004975 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | B.1.525 | 0.000113 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.560 | 0.00463 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.565 | 0.00081 |
ORF6 | 24 | V24I | Gtt | Att | 1 | 1 | B.1.575 | 0.000303 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.582 | 0.000491 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.595 | 0.000261 |
ORF6 | 24 | V24del1 | gTt | g-t | 1 | 1 | B.1.596 | 0.000087 |
ORF6 | 24 | V24del2 | gTT | g-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.618 | 0.004032 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.628 | 0.000352 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.1.9.3 | 0.038462 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | B.31 | 0.003731 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | B.40 | 0.000364 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | C.2.1 | 0.006667 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | C.36.3.1 | 0.002717 |
ORF6 | 24 | V24V | gtT | gtG | 1 | 1 | C.37 | 0.000116 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | N.10 | 0.029412 |
ORF6 | 24 | V24V | gtT | gtG | 1 | 1 | P.1 | 0.000016 |
ORF6 | 24 | V24D | gTt | gAt | 1 | 1 | P.1.1 | 0.000318 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | P.1.10 | 0.000269 |
ORF6 | 24 | V24del2 | gTT | g-- | 1 | 1 | P.1.15 | 0.000232 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | P.1.6 | 0.001946 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF6 | 24 | V24F | Gtt | Ttt | 1 | 1 | P.1.7 | 0.000319 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF6 | 24 | V24V | gtT | gtC | 1 | 1 | Q.3 | 0.000145 |
ORF6 | 24 | V24del | GTT | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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