CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF6 : CodonNum = 21

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF6	21	T21I		nonsyn	aCt	aTt	4880	4879	0.999795	27262-27264
ORF6	21	T21I		nonsyn	aCT	aTA	4880	1	0.000204918	27262-27264
ORF6	21	T21A		nonsyn	Act	Gct	3448	3448	1	27262-27264
ORF6	21	T21del1		del	acT	ac-	556	553	0.994604	27262-27264
ORF6	21	T21del1		del	Act	-ct	556	2	0.00359712	27262-27264
ORF6	21	T21del1		del	ACt	-Tt	556	1	0.00179856	27262-27264
ORF6	21	T21T		syn	acT	acC	496	351	0.707661	27262-27264
ORF6	21	T21T		syn	acT	acG	496	114	0.229839	27262-27264
ORF6	21	T21T		syn	acT	acA	496	31	0.0625	27262-27264
ORF6	21	T21del		del	ACT	---	163	163	1	27262-27264
ORF6	21	T21P		nonsyn	Act	Cct	143	143	1	27262-27264
ORF6	21	T21N		nonsyn	aCt	aAt	71	71	1	27262-27264
ORF6	21	T21S		nonsyn	aCt	aGt	57	45	0.789474	27262-27264
ORF6	21	T21S		nonsyn	Act	Tct	57	8	0.140351	27262-27264
ORF6	21	T21S		nonsyn	AcT	TcC	57	3	0.0526316	27262-27264
ORF6	21	T21S		nonsyn	AcT	TcG	57	1	0.0175439	27262-27264
ORF6	21	T21del2		del	aCT	a--	27	19	0.703704	27262-27264
ORF6	21	T21del2		del	ACt	--t	27	8	0.296296	27262-27264
ORF6	21	T21V		nonsyn	ACt	GTt	3	3	1	27262-27264
ORF6	21	T21M		nonsyn	aCT	aTG	2	2	1	27262-27264
ORF6	21	T21D		nonsyn	ACt	GAt	2	1	0.5	27262-27264
ORF6	21	T21R		nonsyn	ACt	CGt	2	1	0.5	27262-27264
ORF6	21	T21R		nonsyn	aCT	aGA	2	1	0.5	27262-27264
ORF6	21	T21D		nonsyn	ACT	GAC	2	1	0.5	27262-27264
ORF6	21	T21C		nonsyn	ACT	TGC	1	1	1	27262-27264
ORF6	21	T21K		nonsyn	aCT	aAA	1	1	1	27262-27264
ORF6	21	T21L		nonsyn	ACt	CTt	1	1	1	27262-27264
ORF6	21	T21F		nonsyn	ACt	TTt	1	1	1	27262-27264

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF6	21	T21I	aCt	aTt	4879	4880	All	0.000933
ORF6	21	T21I	aCT	aTA	1	4880	All	0
ORF6	21	T21A	Act	Gct	3448	3448	All	0.000659
ORF6	21	T21A	Act	Gct	2872	2872	AY.25	0.017275
ORF6	21	T21I	aCt	aTt	1867	1867	B.1.1.7	0.001671
ORF6	21	T21del1	acT	ac-	553	556	All	0.000106
ORF6	21	T21del1	Act	-ct	2	556	All	0
ORF6	21	T21del1	ACt	-Tt	1	556	All	0
ORF6	21	T21T	acT	acC	351	496	All	0.000067
ORF6	21	T21T	acT	acG	114	496	All	0.000022
ORF6	21	T21T	acT	acA	31	496	All	0.000006
ORF6	21	T21A	Act	Gct	453	453	AY.103	0.002813
ORF6	21	T21I	aCt	aTt	372	372	AY.4	0.000579
ORF6	21	T21I	aCt	aTt	343	343	AY.3	0.003412
ORF6	21	T21del1	acT	ac-	302	302	AY.4	0.00047
ORF6	21	T21I	aCt	aTt	258	258	B.1.637	0.018853
ORF6	21	T21I	aCt	aTt	172	172	AY.4.2	0.00373
ORF6	21	T21del	ACT	---	163	163	All	0.000031
ORF6	21	T21P	Act	Cct	143	143	All	0.000027
ORF6	21	T21I	aCt	aTt	135	135	B.1.617.2	0.000508
ORF6	21	T21T	acT	acC	116	124	B.1.1.7	0.000104
ORF6	21	T21T	acT	acA	6	124	B.1.1.7	0.000005
ORF6	21	T21T	acT	acG	2	124	B.1.1.7	0.000002
ORF6	21	T21I	aCt	aTt	103	103	AY.25	0.00062
ORF6	21	T21I	aCt	aTt	103	103	AY.9.2	0.003783
ORF6	21	T21T	acT	acG	98	98	B.1.1.125	1
ORF6	21	T21I	aCt	aTt	88	88	AY.103	0.000546
ORF6	21	T21I	aCt	aTt	80	80	C.37	0.009285
ORF6	21	T21N	aCt	aAt	71	71	All	0.000014
ORF6	21	T21I	aCt	aTt	70	70	B.1.621	0.006196
ORF6	21	T21I	aCt	aTt	69	69	B.1.526	0.001622
ORF6	21	T21del1	acT	ac-	68	68	B.1.1.7	0.000061
ORF6	21	T21T	acT	acC	64	64	AY.103	0.000397
ORF6	21	T21P	Act	Cct	63	63	B.1.1.7	0.000056
ORF6	21	T21S	aCt	aGt	45	57	All	0.000009
ORF6	21	T21S	Act	Tct	8	57	All	0.000002
ORF6	21	T21S	AcT	TcC	3	57	All	0.000001
ORF6	21	T21S	AcT	TcG	1	57	All	0
ORF6	21	T21I	aCt	aTt	54	54	B.1.427	0.002727
ORF6	21	T21I	aCt	aTt	52	52	AY.44	0.000317
ORF6	21	T21I	aCt	aTt	51	51	B.1.2	0.000449
ORF6	21	T21I	aCt	aTt	50	50	AY.43	0.000222
ORF6	21	T21I	aCt	aTt	49	49	B.1	0.000449
ORF6	21	T21del1	acT	ac-	43	43	AY.43	0.000191
ORF6	21	T21I	aCt	aTt	41	41	B.1.1	0.000744
ORF6	21	T21I	aCt	aTt	41	41	P.1	0.000646
ORF6	21	T21S	aCt	aGt	40	40	B.1.1.7	0.000036
ORF6	21	T21I	aCt	aTt	40	40	B.1.429	0.000941
ORF6	21	T21P	Act	Cct	40	40	B.1.617.2	0.000151
ORF6	21	T21del	ACT	---	35	35	AY.4	0.000054
ORF6	21	T21I	aCt	aTt	33	34	B.1.177.21	0.002524
ORF6	21	T21I	aCT	aTA	1	34	B.1.177.21	0.000076
ORF6	21	T21P	Act	Cct	33	33	AY.119	0.001165
ORF6	21	T21del	ACT	---	33	33	B.1.177.21	0.002524
ORF6	21	T21I	aCt	aTt	31	31	AY.75	0.001737
ORF6	21	T21del1	acT	ac-	28	28	B.1	0.000256
ORF6	21	T21I	aCt	aTt	28	28	B.1.177.42	0.025045
ORF6	21	T21del2	aCT	a--	19	27	All	0.000004
ORF6	21	T21del2	ACt	--t	8	27	All	0.000002
ORF6	21	T21I	aCt	aTt	27	27	B.1.525	0.003055
ORF6	21	T21I	aCt	aTt	26	26	AY.39	0.000642
ORF6	21	T21I	aCt	aTt	25	25	AY.102	0.000663
ORF6	21	T21A	Act	Gct	25	25	B.1.1.7	0.000022
ORF6	21	T21I	aCt	aTt	24	24	B.1.258	0.001597
ORF6	21	T21I	aCt	aTt	24	24	P.1.17	0.003882
ORF6	21	T21del	ACT	---	23	23	B.1.1.7	0.000021
ORF6	21	T21T	acT	acC	20	22	AY.4	0.000031
ORF6	21	T21T	acT	acG	2	22	AY.4	0.000003
ORF6	21	T21I	aCt	aTt	22	22	B.1.160	0.000686
ORF6	21	T21I	aCt	aTt	22	22	B.1.177	0.00029
ORF6	21	T21A	Act	Gct	21	21	B.1.617.2	0.000079
ORF6	21	T21del1	acT	ac-	21	21	B.1.617.2	0.000079
ORF6	21	T21T	acT	acC	20	20	AY.3	0.000199
ORF6	21	T21I	aCt	aTt	20	20	P.1.12	0.009681
ORF6	21	T21T	acT	acC	16	18	B.1.617.2	0.00006
ORF6	21	T21T	acT	acA	2	18	B.1.617.2	0.000008
ORF6	21	T21T	acT	acA	13	16	B.1.177	0.000171
ORF6	21	T21T	acT	acC	3	16	B.1.177	0.00004
ORF6	21	T21I	aCt	aTt	16	16	C.36.3	0.009075
ORF6	21	T21I	aCt	aTt	14	14	AY.118	0.000877
ORF6	21	T21I	aCt	aTt	13	13	AY.20	0.000505
ORF6	21	T21I	aCt	aTt	13	13	AY.29	0.000205
ORF6	21	T21I	aCt	aTt	13	13	B.1.1.33	0.005471
ORF6	21	T21I	aCt	aTt	13	13	B.1.1.519	0.000516
ORF6	21	T21I	aCt	aTt	13	13	B.1.160.16	0.012082
ORF6	21	T21I	aCt	aTt	12	12	AY.6	0.000494
ORF6	21	T21I	aCt	aTt	12	12	B.1.351	0.000357
ORF6	21	T21N	aCt	aAt	11	11	AY.4	0.000017
ORF6	21	T21I	aCt	aTt	11	11	AY.47	0.000342
ORF6	21	T21I	aCt	aTt	11	11	AY.5	0.000227
ORF6	21	T21I	aCt	aTt	11	11	B.1.1.222	0.002244
ORF6	21	T21del1	acT	ac-	11	11	B.1.2	0.000097
ORF6	21	T21I	aCt	aTt	10	10	B.1.177.77	0.007262
ORF6	21	T21T	acT	acG	6	8	AY.25	0.000036
ORF6	21	T21T	acT	acC	1	8	AY.25	0.000006
ORF6	21	T21T	acT	acA	1	8	AY.25	0.000006
ORF6	21	T21I	aCt	aTt	8	8	AY.53	0.0023
ORF6	21	T21I	aCt	aTt	8	8	B.1.1.291	0.005939
ORF6	21	T21N	aCt	aAt	8	8	B.1.1.7	0.000007
ORF6	21	T21T	acT	acC	7	7	AY.23	0.000488
ORF6	21	T21I	aCt	aTt	7	7	AY.34	0.000679
ORF6	21	T21T	acT	acC	7	7	AY.39	0.000173
ORF6	21	T21del1	acT	ac-	7	7	AY.4.2	0.000152
ORF6	21	T21A	Act	Gct	7	7	AY.44	0.000043
ORF6	21	T21T	acT	acC	6	7	B.1	0.000055
ORF6	21	T21T	acT	acG	1	7	B.1	0.000009
ORF6	21	T21del2	ACt	--t	7	7	B.1.177.21	0.000535
ORF6	21	T21N	aCt	aAt	7	7	B.1.36.1	0.007982
ORF6	21	T21I	aCt	aTt	7	7	B.1.369	0.001997
ORF6	21	T21I	aCt	aTt	7	7	P.1.15	0.001626
ORF6	21	T21I	aCt	aTt	6	6	AY.100	0.000276
ORF6	21	T21I	aCt	aTt	6	6	AY.119	0.000212
ORF6	21	T21I	aCt	aTt	6	6	AY.120.1	0.001926
ORF6	21	T21del1	acT	ac-	6	6	AY.25	0.000036
ORF6	21	T21I	aCt	aTt	6	6	AY.36	0.000889
ORF6	21	T21A	Act	Gct	6	6	AY.39	0.000148
ORF6	21	T21A	Act	Gct	6	6	AY.43	0.000027
ORF6	21	T21I	aCt	aTt	6	6	AY.46.5	0.00119
ORF6	21	T21I	aCt	aTt	6	6	AY.99.2	0.000553
ORF6	21	T21T	acT	acC	6	6	B.1.2	0.000053
ORF6	21	T21I	aCt	aTt	6	6	P.1.7	0.001916
ORF6	21	T21I	aCt	aTt	6	6	Q.8	0.000989
ORF6	21	T21del	ACT	---	5	5	AY.103	0.000031
ORF6	21	T21I	aCt	aTt	5	5	AY.116.1	0.001557
ORF6	21	T21del1	acT	ac-	5	5	AY.42	0.000201
ORF6	21	T21T	acT	acA	2	5	AY.43	0.000009
ORF6	21	T21T	acT	acC	2	5	AY.43	0.000009
ORF6	21	T21T	acT	acG	1	5	AY.43	0.000004
ORF6	21	T21T	acT	acC	4	5	AY.44	0.000024
ORF6	21	T21T	acT	acA	1	5	AY.44	0.000006
ORF6	21	T21A	Act	Gct	5	5	AY.75	0.00028
ORF6	21	T21A	Act	Gct	5	5	AY.82	0.006784
ORF6	21	T21del	ACT	---	5	5	B.1	0.000046
ORF6	21	T21I	aCt	aTt	5	5	B.1.1.216	0.004452
ORF6	21	T21T	acT	acC	5	5	B.1.1.318	0.001509
ORF6	21	T21I	aCt	aTt	5	5	B.1.1.420	0.00503
ORF6	21	T21del2	aCT	a--	4	5	B.1.1.7	0.000004
ORF6	21	T21del2	ACt	--t	1	5	B.1.1.7	0.000001
ORF6	21	T21I	aCt	aTt	5	5	B.1.177.10	0.00439
ORF6	21	T21I	aCt	aTt	5	5	B.1.177.33	0.008224
ORF6	21	T21A	Act	Gct	5	5	B.1.466.2	0.001956
ORF6	21	T21N	aCt	aAt	5	5	B.1.617.1	0.000645
ORF6	21	T21del	ACT	---	5	5	B.1.617.2	0.000019
ORF6	21	T21I	aCt	aTt	5	5	B.1.621.1	0.002529
ORF6	21	T21del1	acT	ac-	5	5	P.1	0.000079
ORF6	21	T21I	aCt	aTt	5	5	P.2	0.000933
ORF6	21	T21del	ACT	---	4	4		0.222222
ORF6	21	T21I	aCt	aTt	4	4	A	0.001548
ORF6	21	T21del1	acT	ac-	4	4	A.2.3	0.018957
ORF6	21	T21I	aCt	aTt	4	4	AT.1	0.020513
ORF6	21	T21del1	acT	ac-	4	4	AY.100	0.000184
ORF6	21	T21I	aCt	aTt	4	4	AY.117	0.000338
ORF6	21	T21I	aCt	aTt	4	4	AY.120	0.000149
ORF6	21	T21I	aCt	aTt	4	4	AY.121	0.000541
ORF6	21	T21I	aCt	aTt	4	4	AY.14	0.000352
ORF6	21	T21I	aCt	aTt	4	4	AY.23	0.000279
ORF6	21	T21del1	acT	ac-	4	4	AY.3	0.00004
ORF6	21	T21I	aCt	aTt	4	4	AY.30	0.001583
ORF6	21	T21I	aCt	aTt	4	4	AY.42	0.000161
ORF6	21	T21N	aCt	aAt	4	4	AY.43	0.000018
ORF6	21	T21I	aCt	aTt	4	4	AY.45	0.000487
ORF6	21	T21I	aCt	aTt	4	4	AY.46.2	0.002541
ORF6	21	T21del	ACT	---	4	4	AY.84	0.00175
ORF6	21	T21A	Act	Gct	4	4	AY.85	0.001709
ORF6	21	T21del1	acT	ac-	4	4	B	0.000511
ORF6	21	T21A	Act	Gct	4	4	B.1	0.000037
ORF6	21	T21N	aCt	aAt	4	4	B.1	0.000037
ORF6	21	T21T	acT	acC	3	4	B.1.1	0.000054
ORF6	21	T21T	acT	acG	1	4	B.1.1	0.000018
ORF6	21	T21I	aCt	aTt	4	4	B.1.1.214	0.000222
ORF6	21	T21T	acT	acC	2	4	B.1.177.21	0.000153
ORF6	21	T21T	acT	acG	1	4	B.1.177.21	0.000076
ORF6	21	T21T	acT	acA	1	4	B.1.177.21	0.000076
ORF6	21	T21I	aCt	aTt	4	4	B.1.36	0.000584
ORF6	21	T21I	aCt	aTt	4	4	B.1.36.17	0.001976
ORF6	21	T21I	aCt	aTt	4	4	B.1.408	0.01476
ORF6	21	T21T	acT	acC	4	4	B.1.429	0.000094
ORF6	21	T21I	aCt	aTt	4	4	B.1.438.1	0.000429
ORF6	21	T21I	aCt	aTt	4	4	B.1.568	0.004444
ORF6	21	T21I	aCt	aTt	4	4	B.1.596	0.000349
ORF6	21	T21A	Act	Gct	3	3	A.28	0.007937
ORF6	21	T21P	Act	Cct	3	3	AB.1	0.02459
ORF6	21	T21V	ACt	GTt	3	3	All	0.000001
ORF6	21	T21T	acT	acC	3	3	AY.100	0.000138
ORF6	21	T21del	ACT	---	3	3	AY.119	0.000106
ORF6	21	T21N	aCt	aAt	3	3	AY.119	0.000106
ORF6	21	T21T	acT	acC	3	3	AY.119	0.000106
ORF6	21	T21I	aCt	aTt	3	3	AY.16	0.001139
ORF6	21	T21del1	acT	ac-	3	3	AY.20	0.000117
ORF6	21	T21del	ACT	---	3	3	AY.25	0.000018
ORF6	21	T21N	aCt	aAt	3	3	AY.25	0.000018
ORF6	21	T21N	aCt	aAt	3	3	AY.26	0.000085
ORF6	21	T21I	aCt	aTt	3	3	AY.26	0.000085
ORF6	21	T21T	acT	acC	3	3	AY.33	0.0002
ORF6	21	T21I	aCt	aTt	3	3	AY.39.1	0.000119
ORF6	21	T21I	aCt	aTt	3	3	AY.4.2.1	0.000447
ORF6	21	T21I	aCt	aTt	3	3	AY.4.5	0.000322
ORF6	21	T21del	ACT	---	3	3	AY.43	0.000013
ORF6	21	T21del1	acT	ac-	3	3	AY.44	0.000018
ORF6	21	T21I	aCt	aTt	3	3	AY.46	0.000312
ORF6	21	T21A	Act	Gct	3	3	AY.46	0.000312
ORF6	21	T21del	ACT	---	3	3	AY.5	0.000062
ORF6	21	T21I	aCt	aTt	3	3	AY.71	0.001425
ORF6	21	T21del1	acT	ac-	3	3	AY.71	0.001425
ORF6	21	T21I	aCt	aTt	3	3	AY.98	0.000237
ORF6	21	T21I	aCt	aTt	3	3	AY.98.1	0.000145
ORF6	21	T21I	aCt	aTt	3	3	B.1.1.241	0.006211
ORF6	21	T21I	aCt	aTt	3	3	B.1.1.284	0.000322
ORF6	21	T21T	acT	acC	3	3	B.1.1.519	0.000119
ORF6	21	T21I	aCt	aTt	3	3	B.1.177.60	0.000655
ORF6	21	T21del	ACT	---	3	3	B.1.2	0.000026
ORF6	21	T21I	aCt	aTt	3	3	B.1.234	0.000396
ORF6	21	T21I	aCt	aTt	3	3	B.1.258.11	0.001189
ORF6	21	T21I	aCt	aTt	3	3	B.1.351.5	0.001799
ORF6	21	T21I	aCt	aTt	3	3	B.1.36.36	0.001806
ORF6	21	T21T	acT	acC	3	3	B.1.525	0.000339
ORF6	21	T21del	ACT	---	3	3	B.1.526	0.000071
ORF6	21	T21N	aCt	aAt	3	3	B.1.617.2	0.000011
ORF6	21	T21del1	acT	ac-	3	3	C.37	0.000348
ORF6	21	T21del	ACT	---	3	3	P.1	0.000047
ORF6	21	T21I	aCt	aTt	3	3	P.1.14	0.000143
ORF6	21	T21I	aCt	aTt	3	3	Q.3	0.000435
ORF6	21	T21T	acT	acC	2	2		0.111111
ORF6	21	T21M	aCT	aTG	2	2		0.111111
ORF6	21	T21M	aCT	aTG	2	2	All	0
ORF6	21	T21D	ACt	GAt	1	2	All	0
ORF6	21	T21R	ACt	CGt	1	2	All	0
ORF6	21	T21D	ACT	GAC	1	2	All	0
ORF6	21	T21R	aCT	aGA	1	2	All	0
ORF6	21	T21A	Act	Gct	2	2	AY.1	0.000791
ORF6	21	T21V	ACt	GTt	2	2	AY.103	0.000012
ORF6	21	T21del1	acT	ac-	2	2	AY.103	0.000012
ORF6	21	T21S	Act	Tct	2	2	AY.103	0.000012
ORF6	21	T21del2	aCT	a--	2	2	AY.103	0.000012
ORF6	21	T21I	aCt	aTt	2	2	AY.106	0.00067
ORF6	21	T21T	acT	acG	2	2	AY.114	0.000462
ORF6	21	T21del	ACT	---	2	2	AY.118	0.000125
ORF6	21	T21I	aCt	aTt	2	2	AY.13	0.000322
ORF6	21	T21del	ACT	---	2	2	AY.13	0.000322
ORF6	21	T21I	aCt	aTt	2	2	AY.24	0.000862
ORF6	21	T21del2	aCT	a--	2	2	AY.25	0.000012
ORF6	21	T21del1	acT	ac-	2	2	AY.36	0.000296
ORF6	21	T21I	aCt	aTt	2	2	AY.38	0.000999
ORF6	21	T21N	aCt	aAt	2	2	AY.39	0.000049
ORF6	21	T21I	aCt	aTt	2	2	AY.39.2	0.003082
ORF6	21	T21A	Act	Gct	2	2	AY.4	0.000003
ORF6	21	T21S	aCt	aGt	2	2	AY.4	0.000003
ORF6	21	T21T	acT	acC	2	2	AY.4.2	0.000043
ORF6	21	T21I	aCt	aTt	2	2	AY.4.4	0.000818
ORF6	21	T21del	ACT	---	2	2	AY.42	0.00008
ORF6	21	T21S	Act	Tct	1	2	AY.43	0.000004
ORF6	21	T21S	AcT	TcG	1	2	AY.43	0.000004
ORF6	21	T21del	ACT	---	2	2	AY.44	0.000012
ORF6	21	T21T	acT	acC	2	2	AY.46	0.000208
ORF6	21	T21T	acT	acC	2	2	AY.46.4	0.000329
ORF6	21	T21T	acT	acA	2	2	AY.5	0.000041
ORF6	21	T21I	aCt	aTt	2	2	AY.5.3	0.000675
ORF6	21	T21I	aCt	aTt	2	2	AY.5.4	0.000553
ORF6	21	T21I	aCt	aTt	2	2	AY.66	0.002139
ORF6	21	T21I	aCt	aTt	2	2	AY.73	0.001331
ORF6	21	T21I	aCt	aTt	2	2	AY.74	0.000231
ORF6	21	T21del1	acT	ac-	1	2	AY.75	0.000056
ORF6	21	T21del1	Act	-ct	1	2	AY.75	0.000056
ORF6	21	T21I	aCt	aTt	2	2	AY.82	0.002714
ORF6	21	T21I	aCt	aTt	2	2	AY.84	0.000875
ORF6	21	T21T	acT	acC	2	2	AY.9	0.000135
ORF6	21	T21del	ACT	---	2	2	AY.9.1	0.000167
ORF6	21	T21del1	acT	ac-	2	2	AY.9.2	0.000073
ORF6	21	T21T	acT	acA	2	2	AY.97	0.003401
ORF6	21	T21P	Act	Cct	2	2	B.1	0.000018
ORF6	21	T21del	ACT	---	2	2	B.1.1	0.000036
ORF6	21	T21N	aCt	aAt	2	2	B.1.1	0.000036
ORF6	21	T21I	aCt	aTt	2	2	B.1.1.1	0.000653
ORF6	21	T21N	aCt	aAt	2	2	B.1.1.216	0.001781
ORF6	21	T21I	aCt	aTt	2	2	B.1.1.348	0.001592
ORF6	21	T21I	aCt	aTt	2	2	B.1.1.39	0.001019
ORF6	21	T21D	ACT	GAC	1	2	B.1.1.7	0.000001
ORF6	21	T21D	ACt	GAt	1	2	B.1.1.7	0.000001
ORF6	21	T21I	aCt	aTt	2	2	B.1.1.70	0.000682
ORF6	21	T21I	aCt	aTt	2	2	B.1.157	0.00597
ORF6	21	T21A	Act	Gct	2	2	B.1.177.21	0.000153
ORF6	21	T21N	aCt	aAt	2	2	B.1.177.21	0.000153
ORF6	21	T21I	aCt	aTt	2	2	B.1.177.4	0.000422
ORF6	21	T21N	aCt	aAt	2	2	B.1.221	0.000142
ORF6	21	T21I	aCt	aTt	2	2	B.1.243	0.000139
ORF6	21	T21I	aCt	aTt	2	2	B.1.311	0.000549
ORF6	21	T21T	acT	acC	2	2	B.1.351	0.000059
ORF6	21	T21I	aCt	aTt	2	2	B.1.36.29	0.001035
ORF6	21	T21T	acT	acC	2	2	B.1.36.29	0.001035
ORF6	21	T21del1	acT	ac-	2	2	B.1.36.36	0.001204
ORF6	21	T21T	acT	acC	2	2	B.1.391	0.002255
ORF6	21	T21T	acT	acC	2	2	B.1.398	0.005952
ORF6	21	T21I	aCt	aTt	2	2	B.1.404	0.002604
ORF6	21	T21I	aCt	aTt	2	2	B.1.466.2	0.000782
ORF6	21	T21del	ACT	---	2	2	B.1.525	0.000226
ORF6	21	T21I	aCt	aTt	2	2	B.1.564	0.000852
ORF6	21	T21I	aCt	aTt	2	2	B.1.600	0.011696
ORF6	21	T21I	aCt	aTt	2	2	B.6	0.00182
ORF6	21	T21I	aCt	aTt	2	2	D.2	0.00015
ORF6	21	T21T	acT	acC	2	2	P.1	0.000032
ORF6	21	T21del2	aCT	a--	2	2	P.3	0.00319
ORF6	21	T21I	aCt	aTt	2	2	Q.1	0.000253
ORF6	21	T21S	aCt	aGt	2	2	Q.8	0.00033
ORF6	21	T21I	aCt	aTt	2	2	R.1	0.00018
ORF6	21	T21A	Act	Gct	1	1		0.055556
ORF6	21	T21del1	acT	ac-	1	1	A	0.000387
ORF6	21	T21S	Act	Tct	1	1	A	0.000387
ORF6	21	T21N	aCt	aAt	1	1	A.5	0.001923
ORF6	21	T21K	aCT	aAA	1	1	All	0
ORF6	21	T21C	ACT	TGC	1	1	All	0
ORF6	21	T21L	ACt	CTt	1	1	All	0
ORF6	21	T21F	ACt	TTt	1	1	All	0
ORF6	21	T21I	aCt	aTt	1	1	AM.4	0.003571
ORF6	21	T21del2	aCT	a--	1	1	AP.1	0.001502
ORF6	21	T21I	aCt	aTt	1	1	AY.101	0.00049
ORF6	21	T21T	acT	acC	1	1	AY.102	0.000027
ORF6	21	T21del	ACT	---	1	1	AY.102	0.000027
ORF6	21	T21N	aCt	aAt	1	1	AY.102	0.000027
ORF6	21	T21del1	acT	ac-	1	1	AY.107	0.000466
ORF6	21	T21I	aCt	aTt	1	1	AY.110	0.000113
ORF6	21	T21I	aCt	aTt	1	1	AY.111	0.000183
ORF6	21	T21del1	Act	-ct	1	1	AY.113	0.000142
ORF6	21	T21I	aCt	aTt	1	1	AY.113	0.000142
ORF6	21	T21A	Act	Gct	1	1	AY.113	0.000142
ORF6	21	T21S	Act	Tct	1	1	AY.117	0.000085
ORF6	21	T21A	Act	Gct	1	1	AY.117	0.000085
ORF6	21	T21del1	acT	ac-	1	1	AY.119	0.000035
ORF6	21	T21del2	aCT	a--	1	1	AY.119	0.000035
ORF6	21	T21A	Act	Gct	1	1	AY.119	0.000035
ORF6	21	T21T	acT	acC	1	1	AY.120	0.000037
ORF6	21	T21I	aCt	aTt	1	1	AY.120.2	0.001285
ORF6	21	T21T	acT	acC	1	1	AY.121	0.000135
ORF6	21	T21del1	acT	ac-	1	1	AY.13	0.000161
ORF6	21	T21del2	aCT	a--	1	1	AY.14	0.000088
ORF6	21	T21N	aCt	aAt	1	1	AY.16.1	0.00047
ORF6	21	T21del1	acT	ac-	1	1	AY.19	0.00114
ORF6	21	T21T	acT	acC	1	1	AY.20	0.000039
ORF6	21	T21del	ACT	---	1	1	AY.20	0.000039
ORF6	21	T21I	aCt	aTt	1	1	AY.23.1	0.000417
ORF6	21	T21V	ACt	GTt	1	1	AY.25	0.000006
ORF6	21	T21del	ACT	---	1	1	AY.26	0.000028
ORF6	21	T21T	acT	acC	1	1	AY.26	0.000028
ORF6	21	T21del1	acT	ac-	1	1	AY.26	0.000028
ORF6	21	T21I	aCt	aTt	1	1	AY.27	0.000065
ORF6	21	T21del1	acT	ac-	1	1	AY.27	0.000065
ORF6	21	T21T	acT	acC	1	1	AY.29	0.000016
ORF6	21	T21del1	acT	ac-	1	1	AY.29	0.000016
ORF6	21	T21A	Act	Gct	1	1	AY.3	0.00001
ORF6	21	T21N	aCt	aAt	1	1	AY.3	0.00001
ORF6	21	T21del2	aCT	a--	1	1	AY.3.1	0.000085
ORF6	21	T21I	aCt	aTt	1	1	AY.3.1	0.000085
ORF6	21	T21I	aCt	aTt	1	1	AY.32	0.000532
ORF6	21	T21A	Act	Gct	1	1	AY.32	0.000532
ORF6	21	T21I	aCt	aTt	1	1	AY.33	0.000067
ORF6	21	T21del1	acT	ac-	1	1	AY.33	0.000067
ORF6	21	T21del2	aCT	a--	1	1	AY.33	0.000067
ORF6	21	T21del	ACT	---	1	1	AY.37	0.000316
ORF6	21	T21del	ACT	---	1	1	AY.39	0.000025
ORF6	21	T21del2	aCT	a--	1	1	AY.4	0.000002
ORF6	21	T21T	acT	acC	1	1	AY.4.2.1	0.000149
ORF6	21	T21del2	aCT	a--	1	1	AY.43	0.000004
ORF6	21	T21del	ACT	---	1	1	AY.45	0.000122
ORF6	21	T21P	Act	Cct	1	1	AY.45	0.000122
ORF6	21	T21T	acT	acC	1	1	AY.45	0.000122
ORF6	21	T21N	aCt	aAt	1	1	AY.45	0.000122
ORF6	21	T21I	aCt	aTt	1	1	AY.46.4	0.000165
ORF6	21	T21A	Act	Gct	1	1	AY.47	0.000031
ORF6	21	T21del	ACT	---	1	1	AY.47	0.000031
ORF6	21	T21T	acT	acC	1	1	AY.47	0.000031
ORF6	21	T21A	Act	Gct	1	1	AY.5	0.000021
ORF6	21	T21N	aCt	aAt	1	1	AY.5	0.000021
ORF6	21	T21del2	aCT	a--	1	1	AY.5	0.000021
ORF6	21	T21I	aCt	aTt	1	1	AY.58	0.000907
ORF6	21	T21I	aCt	aTt	1	1	AY.59	0.00053
ORF6	21	T21I	aCt	aTt	1	1	AY.61	0.000105
ORF6	21	T21I	aCt	aTt	1	1	AY.67	0.000464
ORF6	21	T21I	aCt	aTt	1	1	AY.69	0.000187
ORF6	21	T21A	Act	Gct	1	1	AY.69	0.000187
ORF6	21	T21I	aCt	aTt	1	1	AY.7	0.000196
ORF6	21	T21T	acT	acC	1	1	AY.7.1	0.000113
ORF6	21	T21I	aCt	aTt	1	1	AY.7.2	0.000559
ORF6	21	T21del	ACT	---	1	1	AY.70	0.000209
ORF6	21	T21T	acT	acC	1	1	AY.75	0.000056
ORF6	21	T21I	aCt	aTt	1	1	AY.75.1	0.00018
ORF6	21	T21I	aCt	aTt	1	1	AY.77	0.001127
ORF6	21	T21I	aCt	aTt	1	1	AY.81	0.001992
ORF6	21	T21T	acT	acC	1	1	AY.84	0.000437
ORF6	21	T21del1	acT	ac-	1	1	AY.85	0.000427
ORF6	21	T21T	acT	acC	1	1	AY.85	0.000427
ORF6	21	T21I	aCt	aTt	1	1	AY.88	0.000884
ORF6	21	T21del2	aCT	a--	1	1	AY.9	0.000068
ORF6	21	T21I	aCt	aTt	1	1	AY.90	0.000684
ORF6	21	T21T	acT	acC	1	1	AY.93	0.000273
ORF6	21	T21I	aCt	aTt	1	1	AY.93	0.000273
ORF6	21	T21del1	acT	ac-	1	1	AY.98	0.000079
ORF6	21	T21del	ACT	---	1	1	AY.99	0.001049
ORF6	21	T21del1	acT	ac-	1	1	AY.99.2	0.000092
ORF6	21	T21I	aCt	aTt	1	1	AZ.1	0.000867
ORF6	21	T21I	aCt	aTt	1	1	B	0.000128
ORF6	21	T21A	Act	Gct	1	1	B	0.000128
ORF6	21	T21S	AcT	TcC	1	1	B.1	0.000009
ORF6	21	T21S	Act	Tct	1	1	B.1.1	0.000018
ORF6	21	T21del1	acT	ac-	1	1	B.1.1	0.000018
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.101	0.01
ORF6	21	T21T	acT	acA	1	1	B.1.1.153	0.001095
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.157	0.000913
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.176	0.000439
ORF6	21	T21T	acT	acC	1	1	B.1.1.192	0.002309
ORF6	21	T21del	ACT	---	1	1	B.1.1.222	0.000204
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.243	0.004082
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.25	0.000569
ORF6	21	T21A	Act	Gct	1	1	B.1.1.28	0.000311
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.28	0.000311
ORF6	21	T21N	aCt	aAt	1	1	B.1.1.28	0.000311
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.298	0.000862
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.306	0.000438
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.312	0.001912
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.316	0.000925
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.37	0.000193
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.388	0.045455
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.398	0.003226
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.402	0.011111
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.416	0.000905
ORF6	21	T21A	Act	Gct	1	1	B.1.1.46	0.004367
ORF6	21	T21del	ACT	---	1	1	B.1.1.519	0.00004
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.526	0.003546
ORF6	21	T21I	aCt	aTt	1	1	B.1.1.63	0.000386
ORF6	21	T21C	ACT	TGC	1	1	B.1.1.7	0.000001
ORF6	21	T21R	ACt	CGt	1	1	B.1.1.7	0.000001
ORF6	21	T21A	Act	Gct	1	1	B.1.110.3	0.000718
ORF6	21	T21I	aCt	aTt	1	1	B.1.126	0.001276
ORF6	21	T21I	aCt	aTt	1	1	B.1.147	0.000756
ORF6	21	T21N	aCt	aAt	1	1	B.1.177	0.000013
ORF6	21	T21A	Act	Gct	1	1	B.1.177	0.000013
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.11	0.001698
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.16	0.000664
ORF6	21	T21del1	acT	ac-	1	1	B.1.177.20	0.001517
ORF6	21	T21K	aCT	aAA	1	1	B.1.177.21	0.000076
ORF6	21	T21del1	ACt	-Tt	1	1	B.1.177.21	0.000076
ORF6	21	T21R	aCT	aGA	1	1	B.1.177.21	0.000076
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.35	0.000691
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.41	0.0025
ORF6	21	T21T	acT	acC	1	1	B.1.177.44	0.000519
ORF6	21	T21del1	acT	ac-	1	1	B.1.177.44	0.000519
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.53	0.002392
ORF6	21	T21T	acT	acC	1	1	B.1.177.57	0.000281
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.65	0.000665
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.66	0.041667
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.69	0.001484
ORF6	21	T21del1	acT	ac-	1	1	B.1.177.7	0.000165
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.8	0.000752
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.81	0.000189
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.82	0.000477
ORF6	21	T21T	acT	acC	1	1	B.1.177.82	0.000477
ORF6	21	T21I	aCt	aTt	1	1	B.1.177.86	0.000183
ORF6	21	T21I	aCt	aTt	1	1	B.1.214	0.003663
ORF6	21	T21T	acT	acC	1	1	B.1.215	0.009615
ORF6	21	T21T	acT	acC	1	1	B.1.221	0.000071
ORF6	21	T21S	Act	Tct	1	1	B.1.221	0.000071
ORF6	21	T21I	aCt	aTt	1	1	B.1.221	0.000071
ORF6	21	T21I	aCt	aTt	1	1	B.1.223	0.002778
ORF6	21	T21I	aCt	aTt	1	1	B.1.239	0.001221
ORF6	21	T21del1	acT	ac-	1	1	B.1.243	0.00007
ORF6	21	T21F	ACt	TTt	1	1	B.1.258.11	0.000396
ORF6	21	T21I	aCt	aTt	1	1	B.1.258.16	0.001637
ORF6	21	T21I	aCt	aTt	1	1	B.1.258.17	0.000104
ORF6	21	T21T	acT	acC	1	1	B.1.258.17	0.000104
ORF6	21	T21del1	acT	ac-	1	1	B.1.311	0.000275
ORF6	21	T21I	aCt	aTt	1	1	B.1.313	0.006579
ORF6	21	T21I	aCt	aTt	1	1	B.1.330	0.028571
ORF6	21	T21I	aCt	aTt	1	1	B.1.349	0.000715
ORF6	21	T21A	Act	Gct	1	1	B.1.351	0.00003
ORF6	21	T21A	Act	Gct	1	1	B.1.36	0.000146
ORF6	21	T21T	acT	acC	1	1	B.1.36.36	0.000602
ORF6	21	T21T	acT	acC	1	1	B.1.36.39	0.002217
ORF6	21	T21I	aCt	aTt	1	1	B.1.361	0.001289
ORF6	21	T21I	aCt	aTt	1	1	B.1.375	0.00082
ORF6	21	T21I	aCt	aTt	1	1	B.1.389	0.001002
ORF6	21	T21S	AcT	TcC	1	1	B.1.398	0.002976
ORF6	21	T21I	aCt	aTt	1	1	B.1.400	0.000429
ORF6	21	T21del1	acT	ac-	1	1	B.1.404	0.001302
ORF6	21	T21A	Act	Gct	1	1	B.1.423	0.010204
ORF6	21	T21A	Act	Gct	1	1	B.1.427	0.00005
ORF6	21	T21S	aCt	aGt	1	1	B.1.429	0.000024
ORF6	21	T21S	AcT	TcC	1	1	B.1.438	0.006536
ORF6	21	T21A	Act	Gct	1	1	B.1.438.1	0.000107
ORF6	21	T21T	acT	acC	1	1	B.1.466.2	0.000391
ORF6	21	T21I	aCt	aTt	1	1	B.1.474	0.001901
ORF6	21	T21I	aCt	aTt	1	1	B.1.499	0.00105
ORF6	21	T21I	aCt	aTt	1	1	B.1.517	0.000427
ORF6	21	T21I	aCt	aTt	1	1	B.1.524	0.001406
ORF6	21	T21A	Act	Gct	1	1	B.1.525	0.000113
ORF6	21	T21S	Act	Tct	1	1	B.1.526	0.000024
ORF6	21	T21T	acT	acC	1	1	B.1.526	0.000024
ORF6	21	T21I	aCt	aTt	1	1	B.1.561	0.000397
ORF6	21	T21I	aCt	aTt	1	1	B.1.575.1	0.002439
ORF6	21	T21N	aCt	aAt	1	1	B.1.577	0.000687
ORF6	21	T21I	aCt	aTt	1	1	B.1.577	0.000687
ORF6	21	T21I	aCt	aTt	1	1	B.1.587	0.001898
ORF6	21	T21I	aCt	aTt	1	1	B.1.588	0.00091
ORF6	21	T21I	aCt	aTt	1	1	B.1.589	0.007576
ORF6	21	T21T	acT	acC	1	1	B.1.595	0.000261
ORF6	21	T21A	Act	Gct	1	1	B.1.596	0.000087
ORF6	21	T21I	aCt	aTt	1	1	B.1.617.1	0.000129
ORF6	21	T21del	ACT	---	1	1	B.1.617.1	0.000129
ORF6	21	T21L	ACt	CTt	1	1	B.1.617.2	0.000004
ORF6	21	T21del	ACT	---	1	1	B.1.617.3	0.002985
ORF6	21	T21I	aCt	aTt	1	1	B.1.618	0.004032
ORF6	21	T21I	aCt	aTt	1	1	B.1.619	0.000871
ORF6	21	T21T	acT	acC	1	1	B.1.619	0.000871
ORF6	21	T21I	aCt	aTt	1	1	B.1.623	0.000536
ORF6	21	T21del	ACT	---	1	1	B.1.627	0.00202
ORF6	21	T21I	aCt	aTt	1	1	B.1.9	0.006173
ORF6	21	T21I	aCt	aTt	1	1	B.44	0.1
ORF6	21	T21A	Act	Gct	1	1	C.16	0.00106
ORF6	21	T21I	aCt	aTt	1	1	C.16	0.00106
ORF6	21	T21P	Act	Cct	1	1	C.18	0.002591
ORF6	21	T21I	aCt	aTt	1	1	C.37.1	0.002618
ORF6	21	T21N	aCt	aAt	1	1	D.2	0.000075
ORF6	21	T21I	aCt	aTt	1	1	N.1	0.016949
ORF6	21	T21A	Act	Gct	1	1	N.6	0.007092
ORF6	21	T21I	aCt	aTt	1	1	N.9	0.005952
ORF6	21	T21T	acT	acC	1	1	P.1.1	0.000318
ORF6	21	T21del1	acT	ac-	1	1	P.1.14	0.000048
ORF6	21	T21T	acT	acC	1	1	Q.3	0.000145
ORF6	21	T21T	acT	acC	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.