CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF6 | 16 | L16L | syn | Cta | Tta | 7647 | 7601 | 0.993985 | 27247-27249 | |
ORF6 | 16 | L16L | syn | ctA | ctG | 7647 | 26 | 0.00340003 | 27247-27249 | |
ORF6 | 16 | L16L | syn | ctA | ctT | 7647 | 15 | 0.00196155 | 27247-27249 | |
ORF6 | 16 | L16L | syn | ctA | ctC | 7647 | 5 | 0.000653851 | 27247-27249 | |
ORF6 | 16 | L16del | del | CTA | --- | 207 | 207 | 1 | 27247-27249 | |
ORF6 | 16 | L16P | nonsyn | cTa | cCa | 62 | 61 | 0.983871 | 27247-27249 | |
ORF6 | 16 | L16P | nonsyn | cTA | cCG | 62 | 1 | 0.016129 | 27247-27249 | |
ORF6 | 16 | L16I | nonsyn | Cta | Ata | 59 | 57 | 0.966102 | 27247-27249 | |
ORF6 | 16 | L16I | nonsyn | CtA | AtT | 59 | 2 | 0.0338983 | 27247-27249 | |
ORF6 | 16 | L16del2 | del | CTa | --a | 16 | 10 | 0.625 | 27247-27249 | |
ORF6 | 16 | L16del2 | del | CTA | --N | 16 | 3 | 0.1875 | 27247-27249 | |
ORF6 | 16 | L16del2 | del | cTA | c-- | 16 | 2 | 0.125 | 27247-27249 | |
ORF6 | 16 | L16del2 | del | CTA | --C | 16 | 1 | 0.0625 | 27247-27249 | |
ORF6 | 16 | L16V | nonsyn | Cta | Gta | 14 | 13 | 0.928571 | 27247-27249 | |
ORF6 | 16 | L16V | nonsyn | CtA | GtG | 14 | 1 | 0.0714286 | 27247-27249 | |
ORF6 | 16 | L16del1 | del | ctA | ct- | 9 | 6 | 0.666667 | 27247-27249 | |
ORF6 | 16 | L16del1 | del | cTa | c-a | 9 | 1 | 0.111111 | 27247-27249 | |
ORF6 | 16 | L16del1 | del | CtA | -tT | 9 | 1 | 0.111111 | 27247-27249 | |
ORF6 | 16 | L16del1 | del | CTA | -NN | 9 | 1 | 0.111111 | 27247-27249 | |
ORF6 | 16 | L16Q | nonsyn | cTa | cAa | 6 | 6 | 1 | 27247-27249 | |
ORF6 | 16 | L16X | nonsyn | CTa | TAa | 3 | 3 | 1 | 27247-27249 | |
ORF6 | 16 | L16M | nonsyn | CtA | AtG | 3 | 3 | 1 | 27247-27249 | |
ORF6 | 16 | L16S | nonsyn | CTa | TCa | 2 | 2 | 1 | 27247-27249 | |
ORF6 | 16 | L16K | nonsyn | CTa | AAa | 1 | 1 | 1 | 27247-27249 | |
ORF6 | 16 | L16T | nonsyn | CTA | ACC | 1 | 1 | 1 | 27247-27249 | |
ORF6 | 16 | L16Y | nonsyn | CTA | TAT | 1 | 1 | 1 | 27247-27249 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF6 | 16 | L16L | Cta | Tta | 7601 | 7647 | All | 0.001454 |
ORF6 | 16 | L16L | ctA | ctG | 26 | 7647 | All | 0.000005 |
ORF6 | 16 | L16L | ctA | ctT | 15 | 7647 | All | 0.000003 |
ORF6 | 16 | L16L | ctA | ctC | 5 | 7647 | All | 0.000001 |
ORF6 | 16 | L16L | Cta | Tta | 2177 | 2180 | AY.4 | 0.003388 |
ORF6 | 16 | L16L | ctA | ctC | 1 | 2180 | AY.4 | 0.000002 |
ORF6 | 16 | L16L | ctA | ctG | 1 | 2180 | AY.4 | 0.000002 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 2180 | AY.4 | 0.000002 |
ORF6 | 16 | L16L | Cta | Tta | 1857 | 1859 | B.1.1.7 | 0.001662 |
ORF6 | 16 | L16L | ctA | ctC | 2 | 1859 | B.1.1.7 | 0.000002 |
ORF6 | 16 | L16L | Cta | Tta | 597 | 597 | A.27 | 0.988411 |
ORF6 | 16 | L16L | Cta | Tta | 289 | 289 | AY.25 | 0.001738 |
ORF6 | 16 | L16L | Cta | Tta | 244 | 246 | B.1.2 | 0.002149 |
ORF6 | 16 | L16L | ctA | ctT | 2 | 246 | B.1.2 | 0.000018 |
ORF6 | 16 | L16L | Cta | Tta | 202 | 210 | B.1.617.2 | 0.000761 |
ORF6 | 16 | L16L | ctA | ctG | 7 | 210 | B.1.617.2 | 0.000026 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 210 | B.1.617.2 | 0.000004 |
ORF6 | 16 | L16del | CTA | --- | 207 | 207 | All | 0.00004 |
ORF6 | 16 | L16L | Cta | Tta | 183 | 185 | AY.103 | 0.001136 |
ORF6 | 16 | L16L | ctA | ctG | 2 | 185 | AY.103 | 0.000012 |
ORF6 | 16 | L16L | Cta | Tta | 173 | 173 | AY.44 | 0.001053 |
ORF6 | 16 | L16L | Cta | Tta | 104 | 105 | B.1.1 | 0.001887 |
ORF6 | 16 | L16L | ctA | ctG | 1 | 105 | B.1.1 | 0.000018 |
ORF6 | 16 | L16L | Cta | Tta | 95 | 96 | B.1 | 0.00087 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 96 | B.1 | 0.000009 |
ORF6 | 16 | L16del | CTA | --- | 92 | 92 | B.1.177.21 | 0.007035 |
ORF6 | 16 | L16L | Cta | Tta | 85 | 87 | AY.43 | 0.000377 |
ORF6 | 16 | L16L | ctA | ctG | 2 | 87 | AY.43 | 0.000009 |
ORF6 | 16 | L16L | Cta | Tta | 77 | 77 | AY.2 | 0.027422 |
ORF6 | 16 | L16L | Cta | Tta | 76 | 76 | P.1 | 0.001197 |
ORF6 | 16 | L16P | cTa | cCa | 61 | 62 | All | 0.000012 |
ORF6 | 16 | L16P | cTA | cCG | 1 | 62 | All | 0 |
ORF6 | 16 | L16I | Cta | Ata | 57 | 59 | All | 0.000011 |
ORF6 | 16 | L16I | CtA | AtT | 2 | 59 | All | 0 |
ORF6 | 16 | L16L | Cta | Tta | 49 | 49 | B.1.526 | 0.001152 |
ORF6 | 16 | L16L | Cta | Tta | 46 | 46 | AY.3 | 0.000458 |
ORF6 | 16 | L16L | Cta | Tta | 44 | 44 | B.1.36 | 0.00642 |
ORF6 | 16 | L16L | Cta | Tta | 42 | 42 | AY.9.2 | 0.001543 |
ORF6 | 16 | L16L | Cta | Tta | 39 | 39 | B.1.177 | 0.000514 |
ORF6 | 16 | L16L | Cta | Tta | 37 | 37 | B.1.258.17 | 0.003847 |
ORF6 | 16 | L16L | Cta | Tta | 34 | 34 | AY.29 | 0.000536 |
ORF6 | 16 | L16L | Cta | Tta | 34 | 34 | B.1.221 | 0.002415 |
ORF6 | 16 | L16L | Cta | Tta | 29 | 32 | AY.39 | 0.000717 |
ORF6 | 16 | L16L | ctA | ctG | 3 | 32 | AY.39 | 0.000074 |
ORF6 | 16 | L16L | Cta | Tta | 31 | 31 | B.1.160 | 0.000967 |
ORF6 | 16 | L16L | Cta | Tta | 31 | 31 | B.1.470 | 0.043539 |
ORF6 | 16 | L16del | CTA | --- | 30 | 30 | AY.4 | 0.000047 |
ORF6 | 16 | L16L | Cta | Tta | 27 | 27 | B.1.351 | 0.000803 |
ORF6 | 16 | L16P | cTa | cCa | 26 | 26 | AY.25 | 0.000156 |
ORF6 | 16 | L16L | Cta | Tta | 25 | 25 | B.1.637 | 0.001827 |
ORF6 | 16 | L16L | Cta | Tta | 23 | 23 | AY.5 | 0.000475 |
ORF6 | 16 | L16L | Cta | Tta | 23 | 23 | C.27 | 0.425926 |
ORF6 | 16 | L16del | CTA | --- | 22 | 22 | B.1.1.7 | 0.00002 |
ORF6 | 16 | L16L | Cta | Tta | 20 | 22 | B.1.429 | 0.000471 |
ORF6 | 16 | L16L | ctA | ctT | 2 | 22 | B.1.429 | 0.000047 |
ORF6 | 16 | L16L | Cta | Tta | 17 | 20 | AY.119 | 0.0006 |
ORF6 | 16 | L16L | ctA | ctG | 3 | 20 | AY.119 | 0.000106 |
ORF6 | 16 | L16L | Cta | Tta | 20 | 20 | AY.23 | 0.001395 |
ORF6 | 16 | L16L | Cta | Tta | 17 | 17 | AY.26 | 0.000481 |
ORF6 | 16 | L16L | Cta | Tta | 17 | 17 | AY.47 | 0.000529 |
ORF6 | 16 | L16del2 | CTa | --a | 10 | 16 | All | 0.000002 |
ORF6 | 16 | L16del2 | CTA | --N | 3 | 16 | All | 0.000001 |
ORF6 | 16 | L16del2 | cTA | c-- | 2 | 16 | All | 0 |
ORF6 | 16 | L16del2 | CTA | --C | 1 | 16 | All | 0 |
ORF6 | 16 | L16L | Cta | Tta | 16 | 16 | AY.102 | 0.000424 |
ORF6 | 16 | L16L | Cta | Tta | 15 | 16 | AY.20 | 0.000583 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 16 | AY.20 | 0.000039 |
ORF6 | 16 | L16L | Cta | Tta | 16 | 16 | B.1.351.2 | 0.004841 |
ORF6 | 16 | L16I | Cta | Ata | 14 | 15 | B.1.1.7 | 0.000013 |
ORF6 | 16 | L16I | CtA | AtT | 1 | 15 | B.1.1.7 | 0.000001 |
ORF6 | 16 | L16L | Cta | Tta | 14 | 15 | B.1.177.21 | 0.001071 |
ORF6 | 16 | L16del2 | CTa | --a | 10 | 15 | B.1.177.21 | 0.000765 |
ORF6 | 16 | L16del2 | CTA | --N | 3 | 15 | B.1.177.21 | 0.000229 |
ORF6 | 16 | L16del2 | cTA | c-- | 1 | 15 | B.1.177.21 | 0.000076 |
ORF6 | 16 | L16L | ctA | ctC | 1 | 15 | B.1.177.21 | 0.000076 |
ORF6 | 16 | L16del2 | CTA | --C | 1 | 15 | B.1.177.21 | 0.000076 |
ORF6 | 16 | L16L | Cta | Tta | 15 | 15 | B.1.243 | 0.001044 |
ORF6 | 16 | L16L | Cta | Tta | 15 | 15 | C.36.3.1 | 0.040761 |
ORF6 | 16 | L16L | Cta | Tta | 15 | 15 | Q.8 | 0.002474 |
ORF6 | 16 | L16V | Cta | Gta | 13 | 14 | All | 0.000002 |
ORF6 | 16 | L16V | CtA | GtG | 1 | 14 | All | 0 |
ORF6 | 16 | L16L | Cta | Tta | 14 | 14 | AY.106 | 0.004689 |
ORF6 | 16 | L16L | Cta | Tta | 13 | 13 | A | 0.005031 |
ORF6 | 16 | L16L | Cta | Tta | 13 | 13 | B | 0.001662 |
ORF6 | 16 | L16L | Cta | Tta | 12 | 12 | AY.14 | 0.001056 |
ORF6 | 16 | L16L | Cta | Tta | 12 | 12 | AY.42 | 0.000483 |
ORF6 | 16 | L16L | Cta | Tta | 12 | 12 | AY.9.1 | 0.001005 |
ORF6 | 16 | L16L | Cta | Tta | 12 | 12 | AY.98.1 | 0.000581 |
ORF6 | 16 | L16L | Cta | Tta | 11 | 12 | B.1.1.519 | 0.000437 |
ORF6 | 16 | L16L | ctA | ctG | 1 | 12 | B.1.1.519 | 0.00004 |
ORF6 | 16 | L16L | Cta | Tta | 12 | 12 | B.1.349 | 0.008578 |
ORF6 | 16 | L16L | Cta | Tta | 12 | 12 | C.37 | 0.001393 |
ORF6 | 16 | L16L | Cta | Tta | 9 | 11 | AY.33 | 0.000601 |
ORF6 | 16 | L16L | ctA | ctG | 2 | 11 | AY.33 | 0.000134 |
ORF6 | 16 | L16L | Cta | Tta | 11 | 11 | AY.46 | 0.001145 |
ORF6 | 16 | L16L | Cta | Tta | 11 | 11 | AY.6 | 0.000452 |
ORF6 | 16 | L16L | Cta | Tta | 11 | 11 | B.1.177.73 | 0.006229 |
ORF6 | 16 | L16L | Cta | Tta | 11 | 11 | B.1.258 | 0.000732 |
ORF6 | 16 | L16L | Cta | Tta | 11 | 11 | B.1.427 | 0.000555 |
ORF6 | 16 | L16L | Cta | Tta | 10 | 10 | B.1.1.207 | 0.01182 |
ORF6 | 16 | L16L | Cta | Tta | 10 | 10 | B.1.596 | 0.000871 |
ORF6 | 16 | L16L | Cta | Tta | 10 | 10 | Q.1 | 0.001263 |
ORF6 | 16 | L16del1 | ctA | ct- | 6 | 9 | All | 0.000001 |
ORF6 | 16 | L16del1 | cTa | c-a | 1 | 9 | All | 0 |
ORF6 | 16 | L16del1 | CtA | -tT | 1 | 9 | All | 0 |
ORF6 | 16 | L16del1 | CTA | -NN | 1 | 9 | All | 0 |
ORF6 | 16 | L16L | Cta | Tta | 9 | 9 | AY.24 | 0.003879 |
ORF6 | 16 | L16L | Cta | Tta | 9 | 9 | AY.4.2 | 0.000195 |
ORF6 | 16 | L16L | Cta | Tta | 9 | 9 | AY.45 | 0.001095 |
ORF6 | 16 | L16L | Cta | Tta | 9 | 9 | B.1.1.193 | 1 |
ORF6 | 16 | L16L | Cta | Tta | 9 | 9 | B.1.525 | 0.001018 |
ORF6 | 16 | L16L | Cta | Tta | 8 | 8 | AY.118 | 0.000501 |
ORF6 | 16 | L16L | Cta | Tta | 8 | 8 | AY.85 | 0.003417 |
ORF6 | 16 | L16L | Cta | Tta | 8 | 8 | B.1.1.222 | 0.001632 |
ORF6 | 16 | L16I | Cta | Ata | 8 | 8 | B.1.1.519 | 0.000318 |
ORF6 | 16 | L16L | Cta | Tta | 8 | 8 | B.1.1.70 | 0.002729 |
ORF6 | 16 | L16I | Cta | Ata | 8 | 8 | B.1.617.2 | 0.00003 |
ORF6 | 16 | L16L | Cta | Tta | 8 | 8 | P.4 | 0.030418 |
ORF6 | 16 | L16I | Cta | Ata | 7 | 7 | AY.100 | 0.000322 |
ORF6 | 16 | L16L | Cta | Tta | 7 | 7 | AY.107 | 0.003262 |
ORF6 | 16 | L16L | Cta | Tta | 7 | 7 | AY.99.2 | 0.000645 |
ORF6 | 16 | L16L | Cta | Tta | 7 | 7 | B.1.1.402 | 0.077778 |
ORF6 | 16 | L16L | Cta | Tta | 7 | 7 | B.1.177.12 | 0.001062 |
ORF6 | 16 | L16L | Cta | Tta | 7 | 7 | B.1.234 | 0.000924 |
ORF6 | 16 | L16Q | cTa | cAa | 6 | 6 | All | 0.000001 |
ORF6 | 16 | L16L | Cta | Tta | 6 | 6 | AY.36 | 0.000889 |
ORF6 | 16 | L16L | Cta | Tta | 6 | 6 | B.1.1.216 | 0.005343 |
ORF6 | 16 | L16L | Cta | Tta | 6 | 6 | B.1.1.416 | 0.00543 |
ORF6 | 16 | L16L | Cta | Tta | 6 | 6 | B.1.177.32 | 0.008097 |
ORF6 | 16 | L16L | Cta | Tta | 6 | 6 | B.1.237 | 0.029851 |
ORF6 | 16 | L16L | Cta | Tta | 6 | 6 | B.1.36.29 | 0.003104 |
ORF6 | 16 | L16L | Cta | Tta | 6 | 6 | B.1.621 | 0.000531 |
ORF6 | 16 | L16L | Cta | Tta | 6 | 6 | P.1.15 | 0.001394 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | AY.100 | 0.00023 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | AY.120 | 0.000186 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | AY.27 | 0.000324 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | AY.34 | 0.000485 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | AY.4.4 | 0.002046 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | AY.46.4 | 0.000823 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | AY.59 | 0.002648 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | AY.71 | 0.002375 |
ORF6 | 16 | L16P | cTa | cCa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | B.1.177.60 | 0.001092 |
ORF6 | 16 | L16P | cTa | cCa | 5 | 5 | B.1.2 | 0.000044 |
ORF6 | 16 | L16del | CTA | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | B.1.377 | 0.022831 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | B.1.438.1 | 0.000536 |
ORF6 | 16 | L16V | Cta | Gta | 5 | 5 | B.1.617.2 | 0.000019 |
ORF6 | 16 | L16del | CTA | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | C.36.3 | 0.002836 |
ORF6 | 16 | L16L | Cta | Tta | 5 | 5 | P.1.14 | 0.000239 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | AY.4.5 | 0.00043 |
ORF6 | 16 | L16del | CTA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | AY.75.1 | 0.000721 |
ORF6 | 16 | L16del | CTA | --- | 4 | 4 | AY.84 | 0.00175 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | B.1.1.28 | 0.001245 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | B.1.1.419 | 0.02963 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | B.1.1.63 | 0.001543 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | B.1.240 | 0.000862 |
ORF6 | 16 | L16del | CTA | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | B.1.561 | 0.001588 |
ORF6 | 16 | L16P | cTa | cCa | 3 | 4 | B.1.617.2 | 0.000011 |
ORF6 | 16 | L16P | cTA | cCG | 1 | 4 | B.1.617.2 | 0.000004 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 4 | D.2 | 0.00015 |
ORF6 | 16 | L16L | ctA | ctC | 1 | 4 | D.2 | 0.000075 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 4 | D.2 | 0.000075 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | P.1.7 | 0.001277 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | P.2 | 0.000747 |
ORF6 | 16 | L16L | Cta | Tta | 4 | 4 | R.1 | 0.00036 |
ORF6 | 16 | L16M | CtA | AtG | 3 | 3 | 0.166667 | |
ORF6 | 16 | L16L | Cta | Tta | 2 | 3 | 0.111111 | |
ORF6 | 16 | L16L | ctA | ctG | 1 | 3 | 0.055556 | |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | A.21 | 0.00831 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | A.29 | 0.015957 |
ORF6 | 16 | L16M | CtA | AtG | 3 | 3 | All | 0.000001 |
ORF6 | 16 | L16X | CTa | TAa | 3 | 3 | All | 0.000001 |
ORF6 | 16 | L16del | CTA | --- | 3 | 3 | AY.119 | 0.000106 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | AY.121 | 0.000406 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | AY.16 | 0.001139 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | AY.3.1 | 0.000256 |
ORF6 | 16 | L16P | cTa | cCa | 3 | 3 | AY.4 | 0.000005 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | AY.51 | 0.002727 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | AY.61 | 0.000314 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | AY.62 | 0.001307 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | AY.74 | 0.000347 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | AY.75 | 0.000168 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | AY.9 | 0.000203 |
ORF6 | 16 | L16del1 | ctA | ct- | 3 | 3 | B.1 | 0.000027 |
ORF6 | 16 | L16del | CTA | --- | 3 | 3 | B.1 | 0.000027 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.1.329 | 0.011538 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.1.434 | 0.001046 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.1.46 | 0.0131 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.110.3 | 0.002155 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.177.10 | 0.002634 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.177.54 | 0.001819 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.177.87 | 0.002183 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.221.2 | 0.012048 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.36.35 | 0.007812 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.499 | 0.003151 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.1.617.1 | 0.000387 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | B.4.7 | 0.030303 |
ORF6 | 16 | L16del | CTA | --- | 3 | 3 | P.1 | 0.000047 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | P.1.8 | 0.014354 |
ORF6 | 16 | L16L | Cta | Tta | 3 | 3 | P.6 | 0.009434 |
ORF6 | 16 | L16del | CTA | --- | 2 | 2 | 0.111111 | |
ORF6 | 16 | L16V | CtA | GtG | 1 | 2 | 0.055556 | |
ORF6 | 16 | L16V | Cta | Gta | 1 | 2 | 0.055556 | |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | A.1 | 0.000564 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | A.2 | 0.001324 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | A.23.1 | 0.001408 |
ORF6 | 16 | L16S | CTa | TCa | 2 | 2 | All | 0 |
ORF6 | 16 | L16del | CTA | --- | 2 | 2 | AY.103 | 0.000012 |
ORF6 | 16 | L16I | Cta | Ata | 2 | 2 | AY.103 | 0.000012 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | AY.105 | 0.001286 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | AY.116 | 0.000574 |
ORF6 | 16 | L16del | CTA | --- | 2 | 2 | AY.13 | 0.000322 |
ORF6 | 16 | L16del | CTA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | AY.28 | 0.003781 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | AY.32 | 0.001065 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | AY.39.1 | 0.000079 |
ORF6 | 16 | L16I | Cta | Ata | 2 | 2 | AY.4 | 0.000003 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | AY.41 | 0.000588 |
ORF6 | 16 | L16del | CTA | --- | 2 | 2 | AY.42 | 0.00008 |
ORF6 | 16 | L16P | cTa | cCa | 2 | 2 | AY.47 | 0.000062 |
ORF6 | 16 | L16del | CTA | --- | 2 | 2 | AY.5 | 0.000041 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | AY.58 | 0.001815 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | AY.65 | 0.001066 |
ORF6 | 16 | L16del | CTA | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 2 | AY.95 | 0.000761 |
ORF6 | 16 | L16L | ctA | ctG | 1 | 2 | AY.95 | 0.000761 |
ORF6 | 16 | L16del | CTA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF6 | 16 | L16P | cTa | cCa | 2 | 2 | B.1.1 | 0.000036 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.1.170 | 0.002494 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.1.214 | 0.000111 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.1.306 | 0.000877 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.1.432 | 0.002532 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.1.44 | 0.004819 |
ORF6 | 16 | L16X | CTa | TAa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF6 | 16 | L16I | Cta | Ata | 2 | 2 | B.1.177 | 0.000026 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.177.7 | 0.00033 |
ORF6 | 16 | L16I | Cta | Ata | 2 | 2 | B.1.2 | 0.000018 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.258.11 | 0.000793 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 2 | B.1.396 | 0.000706 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 2 | B.1.396 | 0.000706 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.466.2 | 0.000782 |
ORF6 | 16 | L16del | CTA | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.567 | 0.006667 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 2 | B.1.577 | 0.000687 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 2 | B.1.577 | 0.000687 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.582 | 0.000981 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.595 | 0.000522 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.1.623 | 0.001073 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.40 | 0.000729 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.45 | 0.007663 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | B.52 | 0.020202 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | C.1.2 | 0.008511 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | C.36 | 0.001821 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | P.1.10 | 0.000539 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | P.1.17 | 0.000324 |
ORF6 | 16 | L16L | Cta | Tta | 2 | 2 | S.1 | 0.009901 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | 0.055556 | |
ORF6 | 16 | L16V | Cta | Gta | 1 | 1 | A.1 | 0.000282 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | A.2.5 | 0.000499 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AA.7 | 0.009174 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AD.2 | 0.000219 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AE.8 | 0.000489 |
ORF6 | 16 | L16K | CTa | AAa | 1 | 1 | All | 0 |
ORF6 | 16 | L16T | CTA | ACC | 1 | 1 | All | 0 |
ORF6 | 16 | L16Y | CTA | TAT | 1 | 1 | All | 0 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.1 | 0.000396 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | AY.102 | 0.000027 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.102 | 0.000027 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | AY.103 | 0.000006 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.109 | 0.00074 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.118 | 0.000063 |
ORF6 | 16 | L16del1 | CtA | -tT | 1 | 1 | AY.119 | 0.000035 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.12 | 0.000316 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
ORF6 | 16 | L16del1 | ctA | ct- | 1 | 1 | AY.20 | 0.000039 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | AY.25 | 0.000006 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | AY.3 | 0.00001 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.30 | 0.000396 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.34.1 | 0.00051 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.37 | 0.000316 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | AY.38 | 0.000499 |
ORF6 | 16 | L16V | Cta | Gta | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | AY.39 | 0.000025 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.39.2 | 0.001541 |
ORF6 | 16 | L16V | Cta | Gta | 1 | 1 | AY.4 | 0.000002 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.4.1 | 0.000737 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | AY.4.5 | 0.000107 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | AY.42 | 0.00004 |
ORF6 | 16 | L16V | Cta | Gta | 1 | 1 | AY.43 | 0.000004 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | AY.43 | 0.000004 |
ORF6 | 16 | L16Q | cTa | cAa | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | AY.44 | 0.000006 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.45 | 0.000122 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | AY.45 | 0.000122 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | AY.45 | 0.000122 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.46.2 | 0.000635 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | AY.46.6 | 0.000072 |
ORF6 | 16 | L16del1 | ctA | ct- | 1 | 1 | AY.47 | 0.000031 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | AY.5 | 0.000021 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.54 | 0.000095 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF6 | 16 | L16L | ctA | ctG | 1 | 1 | AY.69 | 0.000187 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.7.1 | 0.000113 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.7.2 | 0.000559 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.70 | 0.000209 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | AY.75 | 0.000056 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.79 | 0.001211 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.88 | 0.000884 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.92 | 0.000287 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.94 | 0.000443 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | AY.98 | 0.000079 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF6 | 16 | L16del2 | cTA | c-- | 1 | 1 | B.1 | 0.000009 |
ORF6 | 16 | L16S | CTa | TCa | 1 | 1 | B.1 | 0.000009 |
ORF6 | 16 | L16V | Cta | Gta | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.10 | 0.001115 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.117 | 0.009709 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.142 | 0.017544 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.153 | 0.001095 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.161 | 0.003534 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.174 | 0.003378 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.192 | 0.002309 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.198 | 0.001468 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.241 | 0.00207 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.243 | 0.004082 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.25 | 0.000569 |
ORF6 | 16 | L16V | Cta | Gta | 1 | 1 | B.1.1.269 | 0.001353 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.279 | 0.001121 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.284 | 0.000107 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.294 | 0.001266 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.311 | 0.000358 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.317 | 0.000412 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.318 | 0.000302 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.326 | 0.001761 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.334 | 0.016393 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.348 | 0.000796 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.365 | 0.005587 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.369 | 0.000446 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | B.1.1.377 | 0.001381 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.39 | 0.00051 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.4 | 0.002976 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.404 | 0.015873 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.407 | 0.041667 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.409 | 0.002833 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.50 | 0.000679 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.526 | 0.003546 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.528 | 0.004808 |
ORF6 | 16 | L16S | CTa | TCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 16 | L16Y | CTA | TAT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 16 | L16Q | cTa | cAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.71 | 0.006061 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.1.95 | 0.019608 |
ORF6 | 16 | L16L | ctA | ctG | 1 | 1 | B.1.160.26 | 0.002421 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.160.33 | 0.004425 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.177.20 | 0.001517 |
ORF6 | 16 | L16T | CTA | ACC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | B.1.177.21 | 0.000076 |
ORF6 | 16 | L16del1 | CTA | -NN | 1 | 1 | B.1.177.21 | 0.000076 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.177.4 | 0.000211 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.177.53 | 0.002392 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | B.1.177.7 | 0.000165 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.177.81 | 0.000189 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.177.82 | 0.000477 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.177.84 | 0.006667 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.189 | 0.004292 |
ORF6 | 16 | L16del1 | ctA | ct- | 1 | 1 | B.1.2 | 0.000009 |
ORF6 | 16 | L16V | Cta | Gta | 1 | 1 | B.1.2 | 0.000009 |
ORF6 | 16 | L16Q | cTa | cAa | 1 | 1 | B.1.2 | 0.000009 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.206 | 0.000816 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.214.2 | 0.0006 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | B.1.221 | 0.000071 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | B.1.234 | 0.000132 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.239 | 0.001221 |
ORF6 | 16 | L16K | CTa | AAa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.311 | 0.000275 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 1 | B.1.35 | 0.008475 |
ORF6 | 16 | L16I | CtA | AtT | 1 | 1 | B.1.351 | 0.00003 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.36.16 | 0.001425 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.36.17 | 0.000494 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.36.18 | 0.00042 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.36.2 | 0.010753 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.36.39 | 0.002217 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.369.1 | 0.027027 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.389 | 0.001002 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.400 | 0.000429 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.403 | 0.003268 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 1 | B.1.404 | 0.001302 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.409 | 0.000781 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.416 | 0.001269 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.438.4 | 0.021277 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.459 | 0.004082 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.560 | 0.00463 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.564 | 0.000426 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.565 | 0.00081 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.575.1 | 0.002439 |
ORF6 | 16 | L16L | ctA | ctT | 1 | 1 | B.1.606 | 0.006024 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.609 | 0.000479 |
ORF6 | 16 | L16X | CTa | TAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF6 | 16 | L16Q | cTa | cAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.618 | 0.004032 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.621.1 | 0.000506 |
ORF6 | 16 | L16del | CTA | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.69 | 0.035714 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.1.9.5 | 0.005682 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.30 | 0.014706 |
ORF6 | 16 | L16Q | cTa | cAa | 1 | 1 | B.31 | 0.003731 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | B.6 | 0.00091 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | B.6.6 | 0.000889 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | C.11 | 0.010638 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | C.16 | 0.00106 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | C.8 | 0.004464 |
ORF6 | 16 | L16Q | cTa | cAa | 1 | 1 | D.2 | 0.000075 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | D.2 | 0.000075 |
ORF6 | 16 | L16P | cTa | cCa | 1 | 1 | P.1 | 0.000016 |
ORF6 | 16 | L16del1 | cTa | c-a | 1 | 1 | P.1.10.1 | 0.00813 |
ORF6 | 16 | L16I | Cta | Ata | 1 | 1 | P.1.14 | 0.000048 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | P.1.17.1 | 0.000875 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | P.1.2 | 0.001156 |
ORF6 | 16 | L16L | Cta | Tta | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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