CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = Y91Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a91Y91YsyntaCtaT68066806125663-25665

Details of the mutation Y91Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a91Y91YtaCtaT68066806All0.001302
ORF3a91Y91YtaCtaT16201620AY.1180.101491
ORF3a91Y91YtaCtaT10511051AY.40.001636
ORF3a91Y91YtaCtaT720720B.1.1.70.000645
ORF3a91Y91YtaCtaT390390B.1.1770.005135
ORF3a91Y91YtaCtaT377377AY.440.002295
ORF3a91Y91YtaCtaT301301P.60.946541
ORF3a91Y91YtaCtaT244244B.10.002235
ORF3a91Y91YtaCtaT155155AY.430.000687
ORF3a91Y91YtaCtaT154154AY.250.000926
ORF3a91Y91YtaCtaT140140B.1.617.20.000527
ORF3a91Y91YtaCtaT129129B.1.20.001136
ORF3a91Y91YtaCtaT124124B.1.3690.035368
ORF3a91Y91YtaCtaT116116B.1.5320.720497
ORF3a91Y91YtaCtaT101101AY.1100.011382
ORF3a91Y91YtaCtaT8686AY.30.000855
ORF3a91Y91YtaCtaT6666AY.9.20.002424
ORF3a91Y91YtaCtaT6363AY.1030.000391
ORF3a91Y91YtaCtaT6363B.120.403846
ORF3a91Y91YtaCtaT4747B.1.1030.903846
ORF3a91Y91YtaCtaT4343P.10.000677
ORF3a91Y91YtaCtaT4040B.1.1600.001248
ORF3a91Y91YtaCtaT3838P.1.150.008829
ORF3a91Y91YtaCtaT3737AY.980.002923
ORF3a91Y91YtaCtaT3737B.1.10.000671
ORF3a91Y91YtaCtaT3232B.1.1.2140.001775
ORF3a91Y91YtaCtaT3131AY.46.20.019695
ORF3a91Y91YtaCtaT2828B.1.5610.011116
ORF3a91Y91YtaCtaT2323B.1.5260.000541
ORF3a91Y91YtaCtaT2121B.1.1.5190.000834
ORF3a91Y91YtaCtaT1818B.1.5960.001568
ORF3a91Y91YtaCtaT1717AY.120.10.005457
ORF3a91Y91YtaCtaT1717AY.470.000529
ORF3a91Y91YtaCtaT1616AY.50.00033
ORF3a91Y91YtaCtaT1616B.1.1.3370.057554
ORF3a91Y91YtaCtaT1515B.1.1.410.094937
ORF3a91Y91YtaCtaT1515C.370.001741
ORF3a91Y91YtaCtaT1212B.1.3510.000357
ORF3a91Y91YtaCtaT1111AY.1020.000292
ORF3a91Y91YtaCtaT1111B.1.1.500.007468
ORF3a91Y91YtaCtaT1111D.20.000825
ORF3a91Y91YtaCtaT1010AY.290.000158
ORF3a91Y91YtaCtaT99AY.1060.003014
ORF3a91Y91YtaCtaT99AY.260.000255
ORF3a91Y91YtaCtaT99B.1.1280.005718
ORF3a91Y91YtaCtaT99B.1.4270.000454
ORF3a91Y91YtaCtaT99B.1.4290.000212
ORF3a91Y91YtaCtaT88AY.390.000198
ORF3a91Y91YtaCtaT88AY.750.000448
ORF3a91Y91YtaCtaT77AY.1200.00026
ORF3a91Y91YtaCtaT77AY.46.50.001389
ORF3a91Y91YtaCtaT77B.230.020468
ORF3a91Y91YtaCtaT77C.36.30.003971
ORF3a91Y91YtaCtaT77R.10.00063
ORF3a91Y91YtaCtaT66A.30.012579
ORF3a91Y91YtaCtaT66AY.4.20.00013
ORF3a91Y91YtaCtaT66B.1.36.360.003612
ORF3a91Y91YtaCtaT55AY.1190.000177
ORF3a91Y91YtaCtaT55AY.230.000349
ORF3a91Y91YtaCtaT55AY.46.60.000361
ORF3a91Y91YtaCtaT55B.1.1.10.001633
ORF3a91Y91YtaCtaT55B.1.2210.000355
ORF3a91Y91YtaCtaT44AY.1090.002959
ORF3a91Y91YtaCtaT44AY.460.000416
ORF3a91Y91YtaCtaT44B.1.1.280.001245
ORF3a91Y91YtaCtaT44B.1.1.3980.012903
ORF3a91Y91YtaCtaT44B.1.1460.016949
ORF3a91Y91YtaCtaT44B.1.2580.000266
ORF3a91Y91YtaCtaT44B.1.36.290.002069
ORF3a91Y91YtaCtaT44Q.30.00058
ORF3a91Y91YtaCtaT33AY.1000.000138
ORF3a91Y91YtaCtaT33AY.1130.000427
ORF3a91Y91YtaCtaT33AY.1160.00086
ORF3a91Y91YtaCtaT33AY.1210.000406
ORF3a91Y91YtaCtaT33AY.140.000264
ORF3a91Y91YtaCtaT33AY.200.000117
ORF3a91Y91YtaCtaT33AY.240.001293
ORF3a91Y91YtaCtaT33AY.4.2.10.000447
ORF3a91Y91YtaCtaT33AY.450.000365
ORF3a91Y91YtaCtaT33AY.46.10.00308
ORF3a91Y91YtaCtaT33AY.780.004622
ORF3a91Y91YtaCtaT33B.1.1.2160.002671
ORF3a91Y91YtaCtaT33B.1.177.160.001993
ORF3a91Y91YtaCtaT33B.1.177.870.002183
ORF3a91Y91YtaCtaT33B.1.5250.000339
ORF3a91Y91YtaCtaT33B.1.6210.000266
ORF3a91Y91YtaCtaT33B.1.6380.157895
ORF3a91Y91YtaCtaT33C.350.002322
ORF3a91Y91YtaCtaT33P.1.120.001452
ORF3a91Y91YtaCtaT33P.1.140.000143
ORF3a91Y91YtaCtaT33P.1.50.230769
ORF3a91Y91YtaCtaT22AY.1040.003968
ORF3a91Y91YtaCtaT22AY.1170.000169
ORF3a91Y91YtaCtaT22AY.16.10.00094
ORF3a91Y91YtaCtaT22AY.210.003795
ORF3a91Y91YtaCtaT22AY.370.000632
ORF3a91Y91YtaCtaT22AY.39.10.000079
ORF3a91Y91YtaCtaT22AY.4.50.000215
ORF3a91Y91YtaCtaT22AY.400.001929
ORF3a91Y91YtaCtaT22AY.420.00008
ORF3a91Y91YtaCtaT22AY.540.000191
ORF3a91Y91YtaCtaT22B.1.1.1150.017857
ORF3a91Y91YtaCtaT22B.1.1.3600.0625
ORF3a91Y91YtaCtaT22B.1.1.4320.002532
ORF3a91Y91YtaCtaT22B.1.177.620.002384
ORF3a91Y91YtaCtaT22B.1.177.70.00033
ORF3a91Y91YtaCtaT22B.1.177.790.004684
ORF3a91Y91YtaCtaT22B.1.2390.002442
ORF3a91Y91YtaCtaT22B.1.2430.000139
ORF3a91Y91YtaCtaT22B.1.360.000292
ORF3a91Y91YtaCtaT22B.1.4620.014493
ORF3a91Y91YtaCtaT22B.1.5750.000607
ORF3a91Y91YtaCtaT22B.1.5950.000522
ORF3a91Y91YtaCtaT22B.1.6270.00404
ORF3a91Y91YtaCtaT22B.1.6370.000146
ORF3a91Y91YtaCtaT22B.3.10.003317
ORF3a91Y91YtaCtaT22B.60.00182
ORF3a91Y91YtaCtaT22C.360.001821
ORF3a91Y91YtaCtaT22P.1.20.002312
ORF3a91Y91YtaCtaT22P.20.000373
ORF3a91Y91YtaCtaT110.055556
ORF3a91Y91YtaCtaT11A.2.5.20.001572
ORF3a91Y91YtaCtaT11A.270.001656
ORF3a91Y91YtaCtaT11AY.116.10.000311
ORF3a91Y91YtaCtaT11AY.120.20.001285
ORF3a91Y91YtaCtaT11AY.270.000065
ORF3a91Y91YtaCtaT11AY.29.10.000221
ORF3a91Y91YtaCtaT11AY.300.000396
ORF3a91Y91YtaCtaT11AY.330.000067
ORF3a91Y91YtaCtaT11AY.360.000148
ORF3a91Y91YtaCtaT11AY.380.000499
ORF3a91Y91YtaCtaT11AY.39.20.001541
ORF3a91Y91YtaCtaT11AY.410.000294
ORF3a91Y91YtaCtaT11AY.46.40.000165
ORF3a91Y91YtaCtaT11AY.480.000465
ORF3a91Y91YtaCtaT11AY.5.30.000337
ORF3a91Y91YtaCtaT11AY.520.000814
ORF3a91Y91YtaCtaT11AY.550.000917
ORF3a91Y91YtaCtaT11AY.60.000041
ORF3a91Y91YtaCtaT11AY.610.000105
ORF3a91Y91YtaCtaT11AY.620.000436
ORF3a91Y91YtaCtaT11AY.650.000533
ORF3a91Y91YtaCtaT11AY.670.000464
ORF3a91Y91YtaCtaT11AY.680.000274
ORF3a91Y91YtaCtaT11AY.740.000116
ORF3a91Y91YtaCtaT11AY.870.000833
ORF3a91Y91YtaCtaT11AY.960.002075
ORF3a91Y91YtaCtaT11AY.970.001701
ORF3a91Y91YtaCtaT11AY.98.10.000048
ORF3a91Y91YtaCtaT11AY.99.20.000092
ORF3a91Y91YtaCtaT11B0.000128
ORF3a91Y91YtaCtaT11B.1.1.1570.000913
ORF3a91Y91YtaCtaT11B.1.1.1700.001247
ORF3a91Y91YtaCtaT11B.1.1.1740.003378
ORF3a91Y91YtaCtaT11B.1.1.2200.001859
ORF3a91Y91YtaCtaT11B.1.1.2220.000204
ORF3a91Y91YtaCtaT11B.1.1.2940.001266
ORF3a91Y91YtaCtaT11B.1.1.330.000421
ORF3a91Y91YtaCtaT11B.1.177.480.003125
ORF3a91Y91YtaCtaT11B.1.177.50.001242
ORF3a91Y91YtaCtaT11B.1.177.650.000665
ORF3a91Y91YtaCtaT11B.1.214.20.0006
ORF3a91Y91YtaCtaT11B.1.2190.009434
ORF3a91Y91YtaCtaT11B.1.258.170.000104
ORF3a91Y91YtaCtaT11B.1.3110.000275
ORF3a91Y91YtaCtaT11B.1.36.180.00042
ORF3a91Y91YtaCtaT11B.1.36.80.001
ORF3a91Y91YtaCtaT11B.1.3660.004878
ORF3a91Y91YtaCtaT11B.1.3890.001002
ORF3a91Y91YtaCtaT11B.1.4510.008197
ORF3a91Y91YtaCtaT11B.1.4650.003802
ORF3a91Y91YtaCtaT11B.1.4800.002488
ORF3a91Y91YtaCtaT11B.1.4990.00105
ORF3a91Y91YtaCtaT11B.1.5090.000866
ORF3a91Y91YtaCtaT11B.1.5550.022222
ORF3a91Y91YtaCtaT11B.1.5640.000426
ORF3a91Y91YtaCtaT11B.1.5800.004065
ORF3a91Y91YtaCtaT11B.1.6090.000479
ORF3a91Y91YtaCtaT11B.1.617.10.000129
ORF3a91Y91YtaCtaT11B.1.6280.000352
ORF3a91Y91YtaCtaT11B.1.780.008547
ORF3a91Y91YtaCtaT11C.10.002392
ORF3a91Y91YtaCtaT11C.160.00106
ORF3a91Y91YtaCtaT11C.36.10.004149
ORF3a91Y91YtaCtaT11C.37.10.002618
ORF3a91Y91YtaCtaT11N.40.004255
ORF3a91Y91YtaCtaT11P.1.70.000319
ORF3a91Y91YtaCtaT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.