CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = Y212Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a212Y212YsyntaCtaT63316331126026-26028

Details of the mutation Y212Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a212Y212YtaCtaT63316331All0.001211
ORF3a212Y212YtaCtaT861861P.1.150.200046
ORF3a212Y212YtaCtaT829829B.1.1.70.000742
ORF3a212Y212YtaCtaT571571B.1.617.20.00215
ORF3a212Y212YtaCtaT471471AY.40.000733
ORF3a212Y212YtaCtaT342342B.1.1.1530.374589
ORF3a212Y212YtaCtaT298298AY.350.069448
ORF3a212Y212YtaCtaT287287B.1.2210.020386
ORF3a212Y212YtaCtaT235235B.1.5650.190438
ORF3a212Y212YtaCtaT108108B.10.000989
ORF3a212Y212YtaCtaT9898B.1.1770.00129
ORF3a212Y212YtaCtaT9797B.1.1.3740.230404
ORF3a212Y212YtaCtaT9595B.1.20.000837
ORF3a212Y212YtaCtaT8888P.10.001386
ORF3a212Y212YtaCtaT7979AY.1030.000491
ORF3a212Y212YtaCtaT7979AY.30.000786
ORF3a212Y212YtaCtaT7979B.1.10.001433
ORF3a212Y212YtaCtaT7272B.1.1.100.080268
ORF3a212Y212YtaCtaT6565AY.430.000288
ORF3a212Y212YtaCtaT6060AY.440.000365
ORF3a212Y212YtaCtaT5959AY.470.001835
ORF3a212Y212YtaCtaT5858B.1.1.5190.002303
ORF3a212Y212YtaCtaT5252AY.1190.001836
ORF3a212Y212YtaCtaT4949B.1.4290.001153
ORF3a212Y212YtaCtaT4343AY.250.000259
ORF3a212Y212YtaCtaT4141AY.200.001593
ORF3a212Y212YtaCtaT3737B.1.1.1890.055976
ORF3a212Y212YtaCtaT3636AY.16.10.016917
ORF3a212Y212YtaCtaT3535B.1.3690.009983
ORF3a212Y212YtaCtaT3535B.1.4270.001767
ORF3a212Y212YtaCtaT3434AY.7.10.003832
ORF3a212Y212YtaCtaT3333AY.260.000934
ORF3a212Y212YtaCtaT3333AY.940.014608
ORF3a212Y212YtaCtaT3030B.1.360.004377
ORF3a212Y212YtaCtaT2828AY.480.013023
ORF3a212Y212YtaCtaT2626B.1.1.2220.005304
ORF3a212Y212YtaCtaT2626P.20.004853
ORF3a212Y212YtaCtaT2525AY.1020.000663
ORF3a212Y212YtaCtaT2424P.1.100.006467
ORF3a212Y212YtaCtaT2323C.350.017802
ORF3a212Y212YtaCtaT2121AY.270.001359
ORF3a212Y212YtaCtaT2020B.1.4700.02809
ORF3a212Y212YtaCtaT1818B.1.1600.000561
ORF3a212Y212YtaCtaT1818B.1.617.10.002321
ORF3a212Y212YtaCtaT1717AY.390.00042
ORF3a212Y212YtaCtaT1717B.1.1.3180.00513
ORF3a212Y212YtaCtaT1717B.1.5610.006749
ORF3a212Y212YtaCtaT1717D.20.001276
ORF3a212Y212YtaCtaT1616C.370.001857
ORF3a212Y212YtaCtaT1515B.1.5260.000353
ORF3a212Y212YtaCtaT1515B.1.5750.004551
ORF3a212Y212YtaCtaT1414B.1.1.3690.006247
ORF3a212Y212YtaCtaT1414B.1.258.170.001456
ORF3a212Y212YtaCtaT1313AY.290.000205
ORF3a212Y212YtaCtaT1313AY.750.000728
ORF3a212Y212YtaCtaT1313B.1.6210.001151
ORF3a212Y212YtaCtaT1313P.1.120.006292
ORF3a212Y212YtaCtaT1212B.1.1.3330.012917
ORF3a212Y212YtaCtaT1212B.1.3510.000357
ORF3a212Y212YtaCtaT1010AY.50.000206
ORF3a212Y212YtaCtaT1010B.1.1.280.003112
ORF3a212Y212YtaCtaT1010B.1.2580.000665
ORF3a212Y212YtaCtaT99AY.230.000628
ORF3a212Y212YtaCtaT99AY.450.001095
ORF3a212Y212YtaCtaT99AY.610.000943
ORF3a212Y212YtaCtaT99C.300.015544
ORF3a212Y212YtaCtaT88AY.4.20.000174
ORF3a212Y212YtaCtaT88AY.420.000322
ORF3a212Y212YtaCtaT88AY.9.10.00067
ORF3a212Y212YtaCtaT88AY.99.20.000737
ORF3a212Y212YtaCtaT88B.1.1.2240.114286
ORF3a212Y212YtaCtaT88B.1.5170.003416
ORF3a212Y212YtaCtaT88R.10.00072
ORF3a212Y212YtaCtaT77A.240.5
ORF3a212Y212YtaCtaT66AY.1080.006615
ORF3a212Y212YtaCtaT66AY.1180.000376
ORF3a212Y212YtaCtaT66B.1.1.1410.012072
ORF3a212Y212YtaCtaT66B.1.1.3060.00263
ORF3a212Y212YtaCtaT66B.1.177.860.001101
ORF3a212Y212YtaCtaT66B.1.351.20.001815
ORF3a212Y212YtaCtaT66B.1.6370.000438
ORF3a212Y212YtaCtaT55A.2.50.002495
ORF3a212Y212YtaCtaT55AY.1210.000677
ORF3a212Y212YtaCtaT55B.1.2370.024876
ORF3a212Y212YtaCtaT55B.1.36.160.007123
ORF3a212Y212YtaCtaT55B.1.416.10.007812
ORF3a212Y212YtaCtaT44AY.330.000267
ORF3a212Y212YtaCtaT44AY.39.10.000158
ORF3a212Y212YtaCtaT44AY.46.40.000658
ORF3a212Y212YtaCtaT44AY.530.00115
ORF3a212Y212YtaCtaT44AY.90.00027
ORF3a212Y212YtaCtaT44B.1.1.1700.004988
ORF3a212Y212YtaCtaT44B.1.1.3970.009009
ORF3a212Y212YtaCtaT44B.1.1110.0047
ORF3a212Y212YtaCtaT44B.1.177.210.000306
ORF3a212Y212YtaCtaT44B.1.177.570.001124
ORF3a212Y212YtaCtaT44B.1.2430.000278
ORF3a212Y212YtaCtaT44B.1.438.10.000429
ORF3a212Y212YtaCtaT44B.6.60.003556
ORF3a212Y212YtaCtaT33AY.1000.000138
ORF3a212Y212YtaCtaT33AY.1140.000693
ORF3a212Y212YtaCtaT33AY.1200.000112
ORF3a212Y212YtaCtaT33AY.23.10.001252
ORF3a212Y212YtaCtaT33AY.46.30.002801
ORF3a212Y212YtaCtaT33AY.550.002752
ORF3a212Y212YtaCtaT33AY.740.000347
ORF3a212Y212YtaCtaT33AY.980.000237
ORF3a212Y212YtaCtaT33B.1.1.2140.000166
ORF3a212Y212YtaCtaT33B.1.1.2840.000322
ORF3a212Y212YtaCtaT33B.1.1.4160.002715
ORF3a212Y212YtaCtaT33B.1.2390.003663
ORF3a212Y212YtaCtaT33B.1.466.20.001174
ORF3a212Y212YtaCtaT33B.1.5960.000261
ORF3a212Y212YtaCtaT33B.1.6040.051724
ORF3a212Y212YtaCtaT33C.380.024194
ORF3a212Y212YtaCtaT33Q.80.000495
ORF3a212Y212YtaCtaT22AD.20.000438
ORF3a212Y212YtaCtaT22AY.1060.00067
ORF3a212Y212YtaCtaT22AY.1170.000169
ORF3a212Y212YtaCtaT22AY.120.10.000642
ORF3a212Y212YtaCtaT22AY.130.000322
ORF3a212Y212YtaCtaT22AY.170.016393
ORF3a212Y212YtaCtaT22AY.190.002281
ORF3a212Y212YtaCtaT22AY.29.10.000441
ORF3a212Y212YtaCtaT22AY.320.001065
ORF3a212Y212YtaCtaT22AY.340.000194
ORF3a212Y212YtaCtaT22AY.370.000632
ORF3a212Y212YtaCtaT22AY.4.50.000215
ORF3a212Y212YtaCtaT22AY.460.000208
ORF3a212Y212YtaCtaT22AY.46.60.000144
ORF3a212Y212YtaCtaT22AY.5.30.000675
ORF3a212Y212YtaCtaT22AY.620.000871
ORF3a212Y212YtaCtaT22AY.690.000373
ORF3a212Y212YtaCtaT22AY.770.002255
ORF3a212Y212YtaCtaT22AY.790.002421
ORF3a212Y212YtaCtaT22AY.9.20.000073
ORF3a212Y212YtaCtaT22B.1.1.2070.002364
ORF3a212Y212YtaCtaT22B.1.1.2160.001781
ORF3a212Y212YtaCtaT22B.1.1.2410.004141
ORF3a212Y212YtaCtaT22B.1.1.2790.002242
ORF3a212Y212YtaCtaT22B.1.1.3120.003824
ORF3a212Y212YtaCtaT22B.1.1.3170.000823
ORF3a212Y212YtaCtaT22B.1.1.3480.001592
ORF3a212Y212YtaCtaT22B.1.1.3540.008772
ORF3a212Y212YtaCtaT22B.1.1.390.001019
ORF3a212Y212YtaCtaT22B.1.1.4480.004065
ORF3a212Y212YtaCtaT22B.1.1.4560.111111
ORF3a212Y212YtaCtaT22B.1.1.4610.024096
ORF3a212Y212YtaCtaT22B.1.1.4620.017241
ORF3a212Y212YtaCtaT22B.1.1390.001466
ORF3a212Y212YtaCtaT22B.1.177.440.001038
ORF3a212Y212YtaCtaT22B.1.177.600.000437
ORF3a212Y212YtaCtaT22B.1.177.70.00033
ORF3a212Y212YtaCtaT22B.1.177.810.000379
ORF3a212Y212YtaCtaT22B.1.2650.002541
ORF3a212Y212YtaCtaT22B.1.3240.00321
ORF3a212Y212YtaCtaT22B.1.3670.001585
ORF3a212Y212YtaCtaT22B.1.4050.024691
ORF3a212Y212YtaCtaT22B.1.4280.002041
ORF3a212Y212YtaCtaT22B.1.4990.002101
ORF3a212Y212YtaCtaT22B.1.564.10.003155
ORF3a212Y212YtaCtaT22B.1.5760.001813
ORF3a212Y212YtaCtaT22B.1.5870.003795
ORF3a212Y212YtaCtaT22B.30.001661
ORF3a212Y212YtaCtaT22C.36.30.001134
ORF3a212Y212YtaCtaT22P.1.10.000635
ORF3a212Y212YtaCtaT22Q.30.00029
ORF3a212Y212YtaCtaT11A.10.000282
ORF3a212Y212YtaCtaT11A.2.20.001689
ORF3a212Y212YtaCtaT11AT.10.005128
ORF3a212Y212YtaCtaT11AY.1090.00074
ORF3a212Y212YtaCtaT11AY.1110.000183
ORF3a212Y212YtaCtaT11AY.1130.000142
ORF3a212Y212YtaCtaT11AY.120.000316
ORF3a212Y212YtaCtaT11AY.140.000088
ORF3a212Y212YtaCtaT11AY.300.000396
ORF3a212Y212YtaCtaT11AY.360.000148
ORF3a212Y212YtaCtaT11AY.380.000499
ORF3a212Y212YtaCtaT11AY.4.2.10.000149
ORF3a212Y212YtaCtaT11AY.5.40.000277
ORF3a212Y212YtaCtaT11AY.540.000095
ORF3a212Y212YtaCtaT11AY.570.000656
ORF3a212Y212YtaCtaT11AY.580.000907
ORF3a212Y212YtaCtaT11AY.60.000041
ORF3a212Y212YtaCtaT11AY.670.000464
ORF3a212Y212YtaCtaT11AY.680.000274
ORF3a212Y212YtaCtaT11AY.75.10.00018
ORF3a212Y212YtaCtaT11AY.780.001541
ORF3a212Y212YtaCtaT11AY.920.000287
ORF3a212Y212YtaCtaT11AY.950.000761
ORF3a212Y212YtaCtaT11AY.960.002075
ORF3a212Y212YtaCtaT11AY.970.001701
ORF3a212Y212YtaCtaT11AY.98.10.000048
ORF3a212Y212YtaCtaT11B0.000128
ORF3a212Y212YtaCtaT11B.1.1.1180.010204
ORF3a212Y212YtaCtaT11B.1.1.1540.04
ORF3a212Y212YtaCtaT11B.1.1.1630.007634
ORF3a212Y212YtaCtaT11B.1.1.1760.000439
ORF3a212Y212YtaCtaT11B.1.1.2250.007194
ORF3a212Y212YtaCtaT11B.1.1.2260.005814
ORF3a212Y212YtaCtaT11B.1.1.2540.011236
ORF3a212Y212YtaCtaT11B.1.1.2770.000759
ORF3a212Y212YtaCtaT11B.1.1.2910.000742
ORF3a212Y212YtaCtaT11B.1.1.3220.008772
ORF3a212Y212YtaCtaT11B.1.1.3260.001761
ORF3a212Y212YtaCtaT11B.1.1.330.000421
ORF3a212Y212YtaCtaT11B.1.1.3550.015385
ORF3a212Y212YtaCtaT11B.1.1.3680.003086
ORF3a212Y212YtaCtaT11B.1.1.370.000193
ORF3a212Y212YtaCtaT11B.1.1.3720.000689
ORF3a212Y212YtaCtaT11B.1.1.3750.011905
ORF3a212Y212YtaCtaT11B.1.1.4320.001266
ORF3a212Y212YtaCtaT11B.1.1.560.017857
ORF3a212Y212YtaCtaT11B.1.1.630.000386
ORF3a212Y212YtaCtaT11B.1.160.160.000929
ORF3a212Y212YtaCtaT11B.1.177.100.000878
ORF3a212Y212YtaCtaT11B.1.177.150.000631
ORF3a212Y212YtaCtaT11B.1.177.230.003236
ORF3a212Y212YtaCtaT11B.1.177.40.000211
ORF3a212Y212YtaCtaT11B.1.177.450.000381
ORF3a212Y212YtaCtaT11B.1.220.001318
ORF3a212Y212YtaCtaT11B.1.2320.000537
ORF3a212Y212YtaCtaT11B.1.2340.000132
ORF3a212Y212YtaCtaT11B.1.2350.002519
ORF3a212Y212YtaCtaT11B.1.2400.000216
ORF3a212Y212YtaCtaT11B.1.243.10.022222
ORF3a212Y212YtaCtaT11B.1.258.110.000396
ORF3a212Y212YtaCtaT11B.1.258.210.007752
ORF3a212Y212YtaCtaT11B.1.3110.000275
ORF3a212Y212YtaCtaT11B.1.3130.006579
ORF3a212Y212YtaCtaT11B.1.351.30.000876
ORF3a212Y212YtaCtaT11B.1.36.170.000494
ORF3a212Y212YtaCtaT11B.1.36.290.000517
ORF3a212Y212YtaCtaT11B.1.36.380.001642
ORF3a212Y212YtaCtaT11B.1.36.80.001
ORF3a212Y212YtaCtaT11B.1.36.90.003215
ORF3a212Y212YtaCtaT11B.1.3960.000706
ORF3a212Y212YtaCtaT11B.1.4150.014286
ORF3a212Y212YtaCtaT11B.1.4330.003195
ORF3a212Y212YtaCtaT11B.1.4530.003236
ORF3a212Y212YtaCtaT11B.1.4710.002732
ORF3a212Y212YtaCtaT11B.1.5240.001406
ORF3a212Y212YtaCtaT11B.1.5400.009709
ORF3a212Y212YtaCtaT11B.1.5640.000426
ORF3a212Y212YtaCtaT11B.1.5810.009434
ORF3a212Y212YtaCtaT11B.1.5950.000261
ORF3a212Y212YtaCtaT11B.1.6130.027027
ORF3a212Y212YtaCtaT11B.1.621.10.000506
ORF3a212Y212YtaCtaT11B.400.000364
ORF3a212Y212YtaCtaT11B.60.00091
ORF3a212Y212YtaCtaT11B.610.005747
ORF3a212Y212YtaCtaT11C.180.002591
ORF3a212Y212YtaCtaT11C.360.000911
ORF3a212Y212YtaCtaT11C.37.10.002618
ORF3a212Y212YtaCtaT11C.40.01
ORF3a212Y212YtaCtaT11P.1.130.000898
ORF3a212Y212YtaCtaT11P.1.160.000374
ORF3a212Y212YtaCtaT11P.1.20.001156
ORF3a212Y212YtaCtaT11P.1.40.000977
ORF3a212Y212YtaCtaT11P.30.001595
ORF3a212Y212YtaCtaT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.