CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = Y113H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a113Y113HnonsynTacCac9959930.9979925729-25731
ORF3a113Y113HnonsynTaCCaT99520.0020100525729-25731

Details of the mutation Y113H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a113Y113HTacCac993995All0.00019
ORF3a113Y113HTaCCaT2995All0
ORF3a113Y113HTacCac307307C.36.3.10.834239
ORF3a113Y113HTacCac217217AY.40.000338
ORF3a113Y113HTacCac102102B.1.1.70.000091
ORF3a113Y113HTacCac6363AY.470.00196
ORF3a113Y113HTacCac6060AY.980.00474
ORF3a113Y113HTacCac3232B.10.000293
ORF3a113Y113HTacCac3131B.1.617.20.000117
ORF3a113Y113HTacCac1717AY.1190.0006
ORF3a113Y113HTacCac1414AY.440.000085
ORF3a113Y113HTacCac1414C.36.30.007941
ORF3a113Y113HTacCac1313AY.1100.001465
ORF3a113Y113HTacCac1212B.1.20.000106
ORF3a113Y113HTacCac99P.10.000142
ORF3a113Y113HTacCac66AY.730.003992
ORF3a113Y113HTacCac350.166667
ORF3a113Y113HTaCCaT250.111111
ORF3a113Y113HTacCac55AY.430.000022
ORF3a113Y113HTacCac55Q.30.000725
ORF3a113Y113HTacCac44AY.1020.000106
ORF3a113Y113HTacCac44AY.1030.000025
ORF3a113Y113HTacCac44AY.250.000024
ORF3a113Y113HTacCac44AY.30.00004
ORF3a113Y113HTacCac44B.1.10.000073
ORF3a113Y113HTacCac44B.1.1770.000053
ORF3a113Y113HTacCac44B.1.5250.000453
ORF3a113Y113HTacCac33AY.5.30.001012
ORF3a113Y113HTacCac33AY.75.10.000541
ORF3a113Y113HTacCac33B.1.258.170.000312
ORF3a113Y113HTacCac33B.1.3510.000089
ORF3a113Y113HTacCac22AY.200.000078
ORF3a113Y113HTacCac22AY.260.000057
ORF3a113Y113HTacCac22AY.460.000208
ORF3a113Y113HTacCac22AY.90.000135
ORF3a113Y113HTacCac22B.1.1.3330.002153
ORF3a113Y113HTacCac22B.1.1.5190.000079
ORF3a113Y113HTacCac22C.370.000232
ORF3a113Y113HTacCac11AE.80.000489
ORF3a113Y113HTacCac11AY.1050.000643
ORF3a113Y113HTacCac11AY.1130.000142
ORF3a113Y113HTacCac11AY.116.10.000311
ORF3a113Y113HTacCac11AY.1200.000037
ORF3a113Y113HTacCac11AY.270.000065
ORF3a113Y113HTacCac11AY.3.10.000085
ORF3a113Y113HTacCac11AY.390.000025
ORF3a113Y113HTacCac11AY.39.10.00004
ORF3a113Y113HTacCac11AY.4.20.000022
ORF3a113Y113HTacCac11AY.4.50.000107
ORF3a113Y113HTacCac11AY.420.00004
ORF3a113Y113HTacCac11AY.610.000105
ORF3a113Y113HTacCac11AY.620.000436
ORF3a113Y113HTacCac11AY.7.20.000559
ORF3a113Y113HTacCac11AY.920.000287
ORF3a113Y113HTacCac11B.1.1.2220.000204
ORF3a113Y113HTacCac11B.1.1.2940.001266
ORF3a113Y113HTacCac11B.1.1.330.000421
ORF3a113Y113HTacCac11B.1.177.330.001645
ORF3a113Y113HTacCac11B.1.177.50.001242
ORF3a113Y113HTacCac11B.1.1890.004292
ORF3a113Y113HTacCac11B.1.360.000146
ORF3a113Y113HTacCac11B.1.36.170.000494
ORF3a113Y113HTacCac11B.1.466.20.000391
ORF3a113Y113HTacCac11B.1.5610.000397
ORF3a113Y113HTacCac11B.1.617.10.000129
ORF3a113Y113HTacCac11C.390.018868
ORF3a113Y113HTacCac11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.