CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 69 | W69L | nonsyn | tGg | tTg | 3744 | 3737 | 0.99813 | 25597-25599 | |
ORF3a | 69 | W69L | nonsyn | TGg | CTg | 3744 | 3 | 0.000801282 | 25597-25599 | |
ORF3a | 69 | W69L | nonsyn | TGG | CTC | 3744 | 2 | 0.000534188 | 25597-25599 | |
ORF3a | 69 | W69L | nonsyn | tGG | tTA | 3744 | 1 | 0.000267094 | 25597-25599 | |
ORF3a | 69 | W69L | nonsyn | TGG | CTT | 3744 | 1 | 0.000267094 | 25597-25599 |
Details of the mutation W69L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 69 | W69L | tGg | tTg | 3737 | 3744 | All | 0.000715 |
ORF3a | 69 | W69L | TGg | CTg | 3 | 3744 | All | 0.000001 |
ORF3a | 69 | W69L | TGG | CTC | 2 | 3744 | All | 0 |
ORF3a | 69 | W69L | tGG | tTA | 1 | 3744 | All | 0 |
ORF3a | 69 | W69L | TGG | CTT | 1 | 3744 | All | 0 |
ORF3a | 69 | W69L | tGg | tTg | 702 | 702 | B.1.1.519 | 0.027877 |
ORF3a | 69 | W69L | tGg | tTg | 404 | 404 | B.1.126 | 0.515306 |
ORF3a | 69 | W69L | tGg | tTg | 387 | 387 | B.1.177.30 | 0.972362 |
ORF3a | 69 | W69L | tGg | tTg | 308 | 308 | R.1 | 0.027723 |
ORF3a | 69 | W69L | tGg | tTg | 222 | 222 | B.1.617.2 | 0.000836 |
ORF3a | 69 | W69L | tGg | tTg | 210 | 210 | AY.5 | 0.004336 |
ORF3a | 69 | W69L | tGg | tTg | 207 | 208 | B.1.1.7 | 0.000185 |
ORF3a | 69 | W69L | tGG | tTA | 1 | 208 | B.1.1.7 | 0.000001 |
ORF3a | 69 | W69L | tGg | tTg | 103 | 103 | AY.102 | 0.002731 |
ORF3a | 69 | W69L | tGg | tTg | 89 | 89 | AY.103 | 0.000553 |
ORF3a | 69 | W69L | tGg | tTg | 82 | 82 | B.1.1 | 0.001488 |
ORF3a | 69 | W69L | tGg | tTg | 70 | 70 | B.1 | 0.000641 |
ORF3a | 69 | W69L | tGg | tTg | 64 | 64 | AY.4 | 0.0001 |
ORF3a | 69 | W69L | tGg | tTg | 63 | 63 | AY.43 | 0.000279 |
ORF3a | 69 | W69L | tGg | tTg | 56 | 56 | AY.3 | 0.000557 |
ORF3a | 69 | W69L | tGg | tTg | 55 | 55 | B.1.2 | 0.000484 |
ORF3a | 69 | W69L | tGg | tTg | 52 | 52 | P.1 | 0.000819 |
ORF3a | 69 | W69L | tGg | tTg | 50 | 50 | AY.44 | 0.000304 |
ORF3a | 69 | W69L | tGg | tTg | 37 | 37 | AY.93 | 0.010104 |
ORF3a | 69 | W69L | tGg | tTg | 34 | 34 | AY.9.2 | 0.001249 |
ORF3a | 69 | W69L | tGg | tTg | 32 | 32 | B.1.1.360 | 1 |
ORF3a | 69 | W69L | tGg | tTg | 31 | 31 | AY.120 | 0.001153 |
ORF3a | 69 | W69L | tGg | tTg | 29 | 29 | B.1.177 | 0.000382 |
ORF3a | 69 | W69L | tGg | tTg | 26 | 26 | B.1.177.87 | 0.018923 |
ORF3a | 69 | W69L | tGg | tTg | 17 | 17 | B.1.1.28 | 0.005291 |
ORF3a | 69 | W69L | tGg | tTg | 16 | 16 | AY.100 | 0.000736 |
ORF3a | 69 | W69L | tGg | tTg | 15 | 15 | B.1.1.265 | 0.047319 |
ORF3a | 69 | W69L | tGg | tTg | 14 | 14 | AY.25 | 0.000084 |
ORF3a | 69 | W69L | tGg | tTg | 13 | 13 | B.29 | 0.045614 |
ORF3a | 69 | W69L | tGg | tTg | 6 | 12 | 0.333333 | |
ORF3a | 69 | W69L | TGg | CTg | 3 | 12 | 0.166667 | |
ORF3a | 69 | W69L | TGG | CTC | 2 | 12 | 0.111111 | |
ORF3a | 69 | W69L | TGG | CTT | 1 | 12 | 0.055556 | |
ORF3a | 69 | W69L | tGg | tTg | 12 | 12 | AY.33 | 0.000801 |
ORF3a | 69 | W69L | tGg | tTg | 11 | 11 | AY.39 | 0.000272 |
ORF3a | 69 | W69L | tGg | tTg | 11 | 11 | B.1.351 | 0.000327 |
ORF3a | 69 | W69L | tGg | tTg | 11 | 11 | B.1.429 | 0.000259 |
ORF3a | 69 | W69L | tGg | tTg | 10 | 10 | AY.119 | 0.000353 |
ORF3a | 69 | W69L | tGg | tTg | 10 | 10 | B.1.474 | 0.019011 |
ORF3a | 69 | W69L | tGg | tTg | 9 | 9 | B.1.1.51 | 0.015464 |
ORF3a | 69 | W69L | tGg | tTg | 8 | 8 | B.1.438.1 | 0.000858 |
ORF3a | 69 | W69L | tGg | tTg | 8 | 8 | B.1.526 | 0.000188 |
ORF3a | 69 | W69L | tGg | tTg | 7 | 7 | AY.7.1 | 0.000789 |
ORF3a | 69 | W69L | tGg | tTg | 7 | 7 | B.1.1.232 | 0.012704 |
ORF3a | 69 | W69L | tGg | tTg | 7 | 7 | P.1.4 | 0.006836 |
ORF3a | 69 | W69L | tGg | tTg | 6 | 6 | B.1.621 | 0.000531 |
ORF3a | 69 | W69L | tGg | tTg | 5 | 5 | AY.106 | 0.001674 |
ORF3a | 69 | W69L | tGg | tTg | 5 | 5 | AY.61 | 0.000524 |
ORF3a | 69 | W69L | tGg | tTg | 5 | 5 | B.1.1.157 | 0.004566 |
ORF3a | 69 | W69L | tGg | tTg | 5 | 5 | B.1.177.69 | 0.007418 |
ORF3a | 69 | W69L | tGg | tTg | 5 | 5 | B.1.575 | 0.001517 |
ORF3a | 69 | W69L | tGg | tTg | 5 | 5 | B.1.596 | 0.000436 |
ORF3a | 69 | W69L | tGg | tTg | 5 | 5 | C.37 | 0.00058 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | AY.35 | 0.000932 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | AY.46 | 0.000416 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | AY.6 | 0.000165 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | AY.9.1 | 0.000335 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | AY.98 | 0.000316 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | AY.98.1 | 0.000194 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | B.1.1.263 | 0.006231 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | B.1.222 | 0.006768 |
ORF3a | 69 | W69L | tGg | tTg | 4 | 4 | P.1.14 | 0.000191 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | AY.4.2 | 0.000065 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | B.1.1.284 | 0.000322 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | B.1.1.348 | 0.002389 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | B.1.1.37 | 0.000579 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | B.1.1.391 | 0.025641 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | B.1.36.38 | 0.004926 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | B.1.617.1 | 0.000387 |
ORF3a | 69 | W69L | tGg | tTg | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.113 | 0.000285 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.48 | 0.00093 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.56 | 0.00321 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.58 | 0.001815 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.1.135 | 0.00939 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.1.306 | 0.000877 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.177.21 | 0.000153 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.177.43 | 0.002954 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.177.56 | 0.001335 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.36.26 | 0.005714 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.36.36 | 0.001204 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | B.1.633 | 0.083333 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | C.37.1 | 0.005236 |
ORF3a | 69 | W69L | tGg | tTg | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.57 | 0.000656 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.81 | 0.001992 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B | 0.000128 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.174 | 0.003378 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.204 | 0.00304 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.228 | 0.003049 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.288 | 0.001916 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.302 | 0.002075 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.374 | 0.002375 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.104 | 0.00369 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.160.12 | 0.00641 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.177.23 | 0.003236 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.220 | 0.01087 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.258.3 | 0.001675 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.35 | 0.008475 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.397 | 0.004854 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.558 | 0.004566 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.606 | 0.006024 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.1.625 | 0.002353 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | B.3.1 | 0.001658 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | C.36 | 0.000911 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 69 | W69L | tGg | tTg | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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