CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = V273M

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a273V273MnonsynGtgAtg883883126209-26211

Details of the mutation V273M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a273V273MGtgAtg883883All0.000169
ORF3a273V273MGtgAtg211211AY.40.000328
ORF3a273V273MGtgAtg141141AY.290.002224
ORF3a273V273MGtgAtg140140AY.60.005758
ORF3a273V273MGtgAtg6464AY.440.00039
ORF3a273V273MGtgAtg6363B.1.617.20.000237
ORF3a273V273MGtgAtg4646B.1.1.70.000041
ORF3a273V273MGtgAtg2626AY.250.000156
ORF3a273V273MGtgAtg2121AY.1030.00013
ORF3a273V273MGtgAtg1717AY.420.000684
ORF3a273V273MGtgAtg1111AY.4.20.000239
ORF3a273V273MGtgAtg1111AY.430.000049
ORF3a273V273MGtgAtg77AY.1050.004502
ORF3a273V273MGtgAtg66AY.50.000124
ORF3a273V273MGtgAtg66B.1.10.000109
ORF3a273V273MGtgAtg55AY.1170.000423
ORF3a273V273MGtgAtg55AY.1200.000186
ORF3a273V273MGtgAtg55AY.450.000608
ORF3a273V273MGtgAtg55AY.46.40.000823
ORF3a273V273MGtgAtg55B.10.000046
ORF3a273V273MGtgAtg55P.10.000079
ORF3a273V273MGtgAtg44AY.1000.000184
ORF3a273V273MGtgAtg44AY.1020.000106
ORF3a273V273MGtgAtg44AY.30.00004
ORF3a273V273MGtgAtg44AY.390.000099
ORF3a273V273MGtgAtg44AY.750.000224
ORF3a273V273MGtgAtg44B.1.1.500.002716
ORF3a273V273MGtgAtg33AY.1210.000406
ORF3a273V273MGtgAtg33AY.980.000237
ORF3a273V273MGtgAtg33B.1.1600.000094
ORF3a273V273MGtgAtg33B.1.20.000026
ORF3a273V273MGtgAtg22AY.1180.000125
ORF3a273V273MGtgAtg22AY.120.000632
ORF3a273V273MGtgAtg22AY.270.000129
ORF3a273V273MGtgAtg22AY.320.001065
ORF3a273V273MGtgAtg22AY.330.000134
ORF3a273V273MGtgAtg22AY.920.000575
ORF3a273V273MGtgAtg22B.1.3510.000059
ORF3a273V273MGtgAtg22B.1.4290.000047
ORF3a273V273MGtgAtg11AY.1080.001103
ORF3a273V273MGtgAtg11AY.200.000039
ORF3a273V273MGtgAtg11AY.260.000028
ORF3a273V273MGtgAtg11AY.34.10.00051
ORF3a273V273MGtgAtg11AY.360.000148
ORF3a273V273MGtgAtg11AY.4.40.000409
ORF3a273V273MGtgAtg11AY.46.30.000934
ORF3a273V273MGtgAtg11AY.580.000907
ORF3a273V273MGtgAtg11AY.700.000209
ORF3a273V273MGtgAtg11AY.860.00083
ORF3a273V273MGtgAtg11AY.870.000833
ORF3a273V273MGtgAtg11AY.880.000884
ORF3a273V273MGtgAtg11AY.98.10.000048
ORF3a273V273MGtgAtg11AY.99.20.000092
ORF3a273V273MGtgAtg11B.1.1.1410.002012
ORF3a273V273MGtgAtg11B.1.1.2050.003717
ORF3a273V273MGtgAtg11B.1.1.2140.000055
ORF3a273V273MGtgAtg11B.1.1770.000013
ORF3a273V273MGtgAtg11B.1.177.210.000076
ORF3a273V273MGtgAtg11B.1.177.60.000977
ORF3a273V273MGtgAtg11B.1.177.600.000218
ORF3a273V273MGtgAtg11B.1.177.690.001484
ORF3a273V273MGtgAtg11B.1.2980.002114
ORF3a273V273MGtgAtg11B.1.3690.000285
ORF3a273V273MGtgAtg11B.1.4970.000315
ORF3a273V273MGtgAtg11B.1.4990.00105
ORF3a273V273MGtgAtg11B.1.5770.000687
ORF3a273V273MGtgAtg11B.1.6210.000089
ORF3a273V273MGtgAtg11P.1.140.000048
ORF3a273V273MGtgAtg11P.1.170.000162
ORF3a273V273MGtgAtg11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.