CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 273 | V273L | nonsyn | Gtg | Ttg | 2268 | 1786 | 0.787478 | 26209-26211 | |
ORF3a | 273 | V273L | nonsyn | Gtg | Ctg | 2268 | 481 | 0.212081 | 26209-26211 | |
ORF3a | 273 | V273L | nonsyn | GtG | CtT | 2268 | 1 | 0.000440917 | 26209-26211 |
Details of the mutation V273L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 273 | V273L | Gtg | Ttg | 1786 | 2268 | All | 0.000342 |
ORF3a | 273 | V273L | Gtg | Ctg | 481 | 2268 | All | 0.000092 |
ORF3a | 273 | V273L | GtG | CtT | 1 | 2268 | All | 0 |
ORF3a | 273 | V273L | Gtg | Ttg | 298 | 495 | AY.4 | 0.000464 |
ORF3a | 273 | V273L | Gtg | Ctg | 197 | 495 | AY.4 | 0.000307 |
ORF3a | 273 | V273L | Gtg | Ttg | 144 | 202 | B.1.1.7 | 0.000129 |
ORF3a | 273 | V273L | Gtg | Ctg | 58 | 202 | B.1.1.7 | 0.000052 |
ORF3a | 273 | V273L | Gtg | Ttg | 176 | 196 | B.1.617.2 | 0.000663 |
ORF3a | 273 | V273L | Gtg | Ctg | 20 | 196 | B.1.617.2 | 0.000075 |
ORF3a | 273 | V273L | Gtg | Ttg | 91 | 107 | AY.43 | 0.000403 |
ORF3a | 273 | V273L | Gtg | Ctg | 16 | 107 | AY.43 | 0.000071 |
ORF3a | 273 | V273L | Gtg | Ttg | 101 | 103 | AY.34 | 0.009793 |
ORF3a | 273 | V273L | Gtg | Ctg | 2 | 103 | AY.34 | 0.000194 |
ORF3a | 273 | V273L | Gtg | Ttg | 64 | 92 | AY.44 | 0.00039 |
ORF3a | 273 | V273L | Gtg | Ctg | 28 | 92 | AY.44 | 0.00017 |
ORF3a | 273 | V273L | Gtg | Ttg | 79 | 79 | AY.5 | 0.001631 |
ORF3a | 273 | V273L | Gtg | Ctg | 32 | 64 | AY.103 | 0.000199 |
ORF3a | 273 | V273L | Gtg | Ttg | 32 | 64 | AY.103 | 0.000199 |
ORF3a | 273 | V273L | Gtg | Ttg | 48 | 60 | AY.25 | 0.000289 |
ORF3a | 273 | V273L | Gtg | Ctg | 12 | 60 | AY.25 | 0.000072 |
ORF3a | 273 | V273L | Gtg | Ttg | 51 | 51 | AY.46.6 | 0.003683 |
ORF3a | 273 | V273L | Gtg | Ttg | 40 | 45 | B.1.2 | 0.000352 |
ORF3a | 273 | V273L | Gtg | Ctg | 5 | 45 | B.1.2 | 0.000044 |
ORF3a | 273 | V273L | Gtg | Ttg | 43 | 43 | AY.98.1 | 0.002083 |
ORF3a | 273 | V273L | Gtg | Ttg | 41 | 41 | AY.77 | 0.046223 |
ORF3a | 273 | V273L | Gtg | Ttg | 27 | 40 | AY.3 | 0.000269 |
ORF3a | 273 | V273L | Gtg | Ctg | 13 | 40 | AY.3 | 0.000129 |
ORF3a | 273 | V273L | Gtg | Ttg | 33 | 33 | AY.42 | 0.001328 |
ORF3a | 273 | V273L | Gtg | Ttg | 27 | 27 | B.1.36.29 | 0.013968 |
ORF3a | 273 | V273L | Gtg | Ttg | 23 | 26 | AY.4.2 | 0.000499 |
ORF3a | 273 | V273L | Gtg | Ctg | 3 | 26 | AY.4.2 | 0.000065 |
ORF3a | 273 | V273L | Gtg | Ctg | 18 | 26 | B.1.429 | 0.000424 |
ORF3a | 273 | V273L | Gtg | Ttg | 8 | 26 | B.1.429 | 0.000188 |
ORF3a | 273 | V273L | Gtg | Ttg | 16 | 18 | B.1 | 0.000147 |
ORF3a | 273 | V273L | Gtg | Ctg | 2 | 18 | B.1 | 0.000018 |
ORF3a | 273 | V273L | Gtg | Ttg | 14 | 16 | AY.39 | 0.000346 |
ORF3a | 273 | V273L | Gtg | Ctg | 2 | 16 | AY.39 | 0.000049 |
ORF3a | 273 | V273L | Gtg | Ctg | 8 | 15 | AY.29 | 0.000126 |
ORF3a | 273 | V273L | Gtg | Ttg | 7 | 15 | AY.29 | 0.00011 |
ORF3a | 273 | V273L | Gtg | Ttg | 15 | 15 | B.1.36.17 | 0.007411 |
ORF3a | 273 | V273L | Gtg | Ttg | 12 | 15 | B.1.427 | 0.000606 |
ORF3a | 273 | V273L | Gtg | Ctg | 3 | 15 | B.1.427 | 0.000151 |
ORF3a | 273 | V273L | Gtg | Ttg | 14 | 14 | AY.26 | 0.000396 |
ORF3a | 273 | V273L | Gtg | Ttg | 13 | 14 | B.1.596 | 0.001133 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 14 | B.1.596 | 0.000087 |
ORF3a | 273 | V273L | Gtg | Ttg | 11 | 12 | AY.102 | 0.000292 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 12 | AY.102 | 0.000027 |
ORF3a | 273 | V273L | Gtg | Ttg | 11 | 12 | AY.33 | 0.000735 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 12 | AY.33 | 0.000067 |
ORF3a | 273 | V273L | Gtg | Ttg | 11 | 12 | AY.46 | 0.001145 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 12 | AY.46 | 0.000104 |
ORF3a | 273 | V273L | Gtg | Ttg | 12 | 12 | B.1.1.362 | 0.067416 |
ORF3a | 273 | V273L | Gtg | Ttg | 10 | 12 | B.1.351 | 0.000297 |
ORF3a | 273 | V273L | Gtg | Ctg | 2 | 12 | B.1.351 | 0.000059 |
ORF3a | 273 | V273L | Gtg | Ttg | 11 | 11 | AY.118 | 0.000689 |
ORF3a | 273 | V273L | Gtg | Ttg | 10 | 11 | B.1.177 | 0.000132 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 11 | B.1.177 | 0.000013 |
ORF3a | 273 | V273L | Gtg | Ttg | 11 | 11 | B.1.526 | 0.000259 |
ORF3a | 273 | V273L | Gtg | Ttg | 9 | 10 | AY.100 | 0.000414 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 10 | AY.100 | 0.000046 |
ORF3a | 273 | V273L | Gtg | Ttg | 9 | 10 | AY.4.1 | 0.006637 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 10 | AY.4.1 | 0.000737 |
ORF3a | 273 | V273L | Gtg | Ttg | 10 | 10 | AY.5.1 | 0.037594 |
ORF3a | 273 | V273L | Gtg | Ttg | 8 | 9 | B.1.1 | 0.000145 |
ORF3a | 273 | V273L | GtG | CtT | 1 | 9 | B.1.1 | 0.000018 |
ORF3a | 273 | V273L | Gtg | Ttg | 6 | 8 | AY.9.2 | 0.00022 |
ORF3a | 273 | V273L | Gtg | Ctg | 2 | 8 | AY.9.2 | 0.000073 |
ORF3a | 273 | V273L | Gtg | Ttg | 7 | 7 | AY.111 | 0.001282 |
ORF3a | 273 | V273L | Gtg | Ttg | 7 | 7 | AY.20 | 0.000272 |
ORF3a | 273 | V273L | Gtg | Ctg | 6 | 7 | AY.47 | 0.000187 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 7 | AY.47 | 0.000031 |
ORF3a | 273 | V273L | Gtg | Ttg | 7 | 7 | AY.84 | 0.003062 |
ORF3a | 273 | V273L | Gtg | Ttg | 7 | 7 | P.1 | 0.00011 |
ORF3a | 273 | V273L | Gtg | Ttg | 5 | 6 | AY.23 | 0.000349 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 6 | AY.23 | 0.00007 |
ORF3a | 273 | V273L | Gtg | Ttg | 6 | 6 | AY.4.4 | 0.002455 |
ORF3a | 273 | V273L | Gtg | Ttg | 6 | 6 | AY.5.4 | 0.00166 |
ORF3a | 273 | V273L | Gtg | Ttg | 6 | 6 | AY.9 | 0.000406 |
ORF3a | 273 | V273L | Gtg | Ttg | 6 | 6 | B.1.1.214 | 0.000333 |
ORF3a | 273 | V273L | Gtg | Ttg | 6 | 6 | B.1.1.318 | 0.001811 |
ORF3a | 273 | V273L | Gtg | Ttg | 5 | 6 | B.1.621 | 0.000443 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 6 | B.1.621 | 0.000089 |
ORF3a | 273 | V273L | Gtg | Ttg | 6 | 6 | P.2 | 0.00112 |
ORF3a | 273 | V273L | Gtg | Ttg | 4 | 5 | AY.119 | 0.000141 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 5 | AY.119 | 0.000035 |
ORF3a | 273 | V273L | Gtg | Ttg | 5 | 5 | AY.4.2.1 | 0.000745 |
ORF3a | 273 | V273L | Gtg | Ttg | 5 | 5 | AY.4.5 | 0.000537 |
ORF3a | 273 | V273L | Gtg | Ctg | 3 | 5 | AY.41 | 0.000882 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 5 | AY.41 | 0.000588 |
ORF3a | 273 | V273L | Gtg | Ttg | 4 | 5 | AY.45 | 0.000487 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 5 | AY.45 | 0.000122 |
ORF3a | 273 | V273L | Gtg | Ttg | 5 | 5 | AY.58 | 0.004537 |
ORF3a | 273 | V273L | Gtg | Ttg | 4 | 5 | AY.85 | 0.001709 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 5 | AY.85 | 0.000427 |
ORF3a | 273 | V273L | Gtg | Ttg | 5 | 5 | AY.90 | 0.003422 |
ORF3a | 273 | V273L | Gtg | Ctg | 3 | 5 | AY.98 | 0.000237 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 5 | AY.98 | 0.000158 |
ORF3a | 273 | V273L | Gtg | Ttg | 5 | 5 | B.1.409 | 0.003906 |
ORF3a | 273 | V273L | Gtg | Ttg | 3 | 4 | AY.121 | 0.000406 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 4 | AY.121 | 0.000135 |
ORF3a | 273 | V273L | Gtg | Ttg | 4 | 4 | AY.46.5 | 0.000794 |
ORF3a | 273 | V273L | Gtg | Ttg | 3 | 4 | AY.6 | 0.000123 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 4 | AY.6 | 0.000041 |
ORF3a | 273 | V273L | Gtg | Ttg | 3 | 4 | AY.75 | 0.000168 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 4 | AY.75 | 0.000056 |
ORF3a | 273 | V273L | Gtg | Ttg | 4 | 4 | AZ.2 | 0.003284 |
ORF3a | 273 | V273L | Gtg | Ttg | 4 | 4 | B.1.1.519 | 0.000159 |
ORF3a | 273 | V273L | Gtg | Ttg | 4 | 4 | B.1.595 | 0.001044 |
ORF3a | 273 | V273L | Gtg | Ctg | 4 | 4 | B.1.8 | 0.00789 |
ORF3a | 273 | V273L | Gtg | Ctg | 3 | 3 | AY.101 | 0.001471 |
ORF3a | 273 | V273L | Gtg | Ttg | 3 | 3 | AY.113 | 0.000427 |
ORF3a | 273 | V273L | Gtg | Ctg | 2 | 3 | AY.120 | 0.000074 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 3 | AY.120 | 0.000037 |
ORF3a | 273 | V273L | Gtg | Ttg | 3 | 3 | AY.71 | 0.001425 |
ORF3a | 273 | V273L | Gtg | Ttg | 3 | 3 | AY.99.2 | 0.000276 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 3 | B.1.243 | 0.000139 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 3 | B.1.243 | 0.00007 |
ORF3a | 273 | V273L | Gtg | Ttg | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 273 | V273L | Gtg | Ttg | 3 | 3 | B.1.525 | 0.000339 |
ORF3a | 273 | V273L | Gtg | Ttg | 3 | 3 | C.37 | 0.000348 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | A | 0.000774 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 2 | AY.34.1 | 0.00051 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 2 | AY.34.1 | 0.00051 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | AY.7 | 0.000392 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 2 | AY.7.1 | 0.000113 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 2 | AY.7.1 | 0.000113 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | AY.93 | 0.000546 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | AY.94 | 0.000885 |
ORF3a | 273 | V273L | Gtg | Ctg | 2 | 2 | AZ.1 | 0.001735 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 273 | V273L | Gtg | Ctg | 2 | 2 | B.1.1.236 | 0.013793 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | B.1.1.409 | 0.005666 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 2 | B.1.1.50 | 0.000679 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 2 | B.1.1.50 | 0.000679 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | B.1.177.82 | 0.000955 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | B.1.177.83 | 0.002963 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | B.1.582 | 0.000981 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | B.1.637 | 0.000146 |
ORF3a | 273 | V273L | Gtg | Ttg | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 273 | V273L | Gtg | Ctg | 2 | 2 | Q.3 | 0.00029 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.1.239 | 0.032258 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.1.452 | 0.111111 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.112 | 0.005181 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.177.35 | 0.000691 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.199 | 0.004132 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | B.1.385 | 0.010638 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.426 | 0.001009 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.595.4 | 0.007299 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | B.1.625 | 0.002353 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | C.36 | 0.000911 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | D.2 | 0.000075 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | N.5 | 0.001767 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | P.1.17.1 | 0.000875 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 273 | V273L | Gtg | Ctg | 1 | 1 | P.3 | 0.001595 |
ORF3a | 273 | V273L | Gtg | Ttg | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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