CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = V273G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a273V273GnonsyngTggGg14110.78571426209-26211
ORF3a273V273GnonsyngTGgGA1430.21428626209-26211

Details of the mutation V273G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a273V273GgTggGg1114All0.000002
ORF3a273V273GgTGgGA314All0.000001
ORF3a273V273GgTggGg22AY.30.00002
ORF3a273V273GgTGgGA22B.10.000018
ORF3a273V273GgTggGg11AY.1030.000006
ORF3a273V273GgTggGg11AY.250.000006
ORF3a273V273GgTggGg11AY.40.000002
ORF3a273V273GgTggGg11AY.470.000031
ORF3a273V273GgTggGg11AY.75.10.00018
ORF3a273V273GgTGgGA11B.1.1.2650.003155
ORF3a273V273GgTggGg11B.1.1.70.000001
ORF3a273V273GgTggGg11B.1.1600.000031
ORF3a273V273GgTggGg11B.1.5950.000261
ORF3a273V273GgTggGg11P.1.10.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.