CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 259 | V259del | del | GTA | --- | 2156 | 2156 | 1 | 26167-26169 |
Details of the mutation V259del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 259 | V259del | GTA | --- | 2156 | 2156 | All | 0.000412 |
ORF3a | 259 | V259del | GTA | --- | 411 | 411 | B.1.1.7 | 0.000368 |
ORF3a | 259 | V259del | GTA | --- | 158 | 158 | B.1.617.2 | 0.000595 |
ORF3a | 259 | V259del | GTA | --- | 137 | 137 | AY.4 | 0.000213 |
ORF3a | 259 | V259del | GTA | --- | 136 | 136 | AY.103 | 0.000844 |
ORF3a | 259 | V259del | GTA | --- | 126 | 126 | AY.43 | 0.000558 |
ORF3a | 259 | V259del | GTA | --- | 123 | 123 | AY.26 | 0.003482 |
ORF3a | 259 | V259del | GTA | --- | 100 | 100 | B.1 | 0.000916 |
ORF3a | 259 | V259del | GTA | --- | 73 | 73 | AY.4.2 | 0.001583 |
ORF3a | 259 | V259del | GTA | --- | 70 | 70 | AY.44 | 0.000426 |
ORF3a | 259 | V259del | GTA | --- | 67 | 67 | AY.25 | 0.000403 |
ORF3a | 259 | V259del | GTA | --- | 55 | 55 | B.1.517 | 0.023484 |
ORF3a | 259 | V259del | GTA | --- | 40 | 40 | AY.3 | 0.000398 |
ORF3a | 259 | V259del | GTA | --- | 35 | 35 | B.1.2 | 0.000308 |
ORF3a | 259 | V259del | GTA | --- | 31 | 31 | AY.47 | 0.000964 |
ORF3a | 259 | V259del | GTA | --- | 30 | 30 | B.1.177 | 0.000395 |
ORF3a | 259 | V259del | GTA | --- | 28 | 28 | B.1.621 | 0.002479 |
ORF3a | 259 | V259del | GTA | --- | 27 | 27 | AY.13 | 0.004346 |
ORF3a | 259 | V259del | GTA | --- | 21 | 21 | AY.39 | 0.000519 |
ORF3a | 259 | V259del | GTA | --- | 20 | 20 | AY.51 | 0.018182 |
ORF3a | 259 | V259del | GTA | --- | 20 | 20 | B.1.1.519 | 0.000794 |
ORF3a | 259 | V259del | GTA | --- | 17 | 17 | AY.71 | 0.008076 |
ORF3a | 259 | V259del | GTA | --- | 16 | 16 | B.1.160 | 0.000499 |
ORF3a | 259 | V259del | GTA | --- | 14 | 14 | AY.5 | 0.000289 |
ORF3a | 259 | V259del | GTA | --- | 13 | 13 | AY.102 | 0.000345 |
ORF3a | 259 | V259del | GTA | --- | 13 | 13 | B.1.177.21 | 0.000994 |
ORF3a | 259 | V259del | GTA | --- | 12 | 12 | AY.75 | 0.000672 |
ORF3a | 259 | V259del | GTA | --- | 12 | 12 | AY.91 | 0.008766 |
ORF3a | 259 | V259del | GTA | --- | 12 | 12 | P.1 | 0.000189 |
ORF3a | 259 | V259del | GTA | --- | 11 | 11 | B.1.637 | 0.000804 |
ORF3a | 259 | V259del | GTA | --- | 10 | 10 | AY.29 | 0.000158 |
ORF3a | 259 | V259del | GTA | --- | 10 | 10 | B.1.351 | 0.000297 |
ORF3a | 259 | V259del | GTA | --- | 9 | 9 | B.1.311 | 0.002471 |
ORF3a | 259 | V259del | GTA | --- | 9 | 9 | B.1.429 | 0.000212 |
ORF3a | 259 | V259del | GTA | --- | 9 | 9 | B.1.526 | 0.000212 |
ORF3a | 259 | V259del | GTA | --- | 8 | 8 | AY.118 | 0.000501 |
ORF3a | 259 | V259del | GTA | --- | 8 | 8 | B.1.1.282 | 0.093023 |
ORF3a | 259 | V259del | GTA | --- | 7 | 7 | AY.98.1 | 0.000339 |
ORF3a | 259 | V259del | GTA | --- | 7 | 7 | B.1.177.11 | 0.011885 |
ORF3a | 259 | V259del | GTA | --- | 6 | 6 | A.27 | 0.009934 |
ORF3a | 259 | V259del | GTA | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF3a | 259 | V259del | GTA | --- | 6 | 6 | AY.7 | 0.001176 |
ORF3a | 259 | V259del | GTA | --- | 6 | 6 | AY.9 | 0.000406 |
ORF3a | 259 | V259del | GTA | --- | 6 | 6 | B.1.525 | 0.000679 |
ORF3a | 259 | V259del | GTA | --- | 6 | 6 | B.1.596 | 0.000523 |
ORF3a | 259 | V259del | GTA | --- | 5 | 5 | AY.20 | 0.000194 |
ORF3a | 259 | V259del | GTA | --- | 5 | 5 | B.1.389 | 0.00501 |
ORF3a | 259 | V259del | GTA | --- | 5 | 5 | B.1.427 | 0.000252 |
ORF3a | 259 | V259del | GTA | --- | 4 | 4 | 0.222222 | |
ORF3a | 259 | V259del | GTA | --- | 4 | 4 | AY.117 | 0.000338 |
ORF3a | 259 | V259del | GTA | --- | 4 | 4 | AY.119 | 0.000141 |
ORF3a | 259 | V259del | GTA | --- | 4 | 4 | AY.120.1 | 0.001284 |
ORF3a | 259 | V259del | GTA | --- | 4 | 4 | AY.45 | 0.000487 |
ORF3a | 259 | V259del | GTA | --- | 4 | 4 | B.1.234 | 0.000528 |
ORF3a | 259 | V259del | GTA | --- | 4 | 4 | B.1.243 | 0.000278 |
ORF3a | 259 | V259del | GTA | --- | 4 | 4 | P.1.16 | 0.001496 |
ORF3a | 259 | V259del | GTA | --- | 4 | 4 | R.1 | 0.00036 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | AY.1 | 0.001187 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | AY.107 | 0.001398 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | AY.116 | 0.00086 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | AY.12 | 0.000948 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | AY.120 | 0.000112 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | AY.53 | 0.000863 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | AY.6 | 0.000123 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | AY.88 | 0.002653 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | B.1.1.189 | 0.004539 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | B.1.258.11 | 0.001189 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | B.1.621.1 | 0.001517 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | C.26 | 0.022059 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | C.37 | 0.000348 |
ORF3a | 259 | V259del | GTA | --- | 3 | 3 | Q.8 | 0.000495 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | AY.35 | 0.000466 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | AY.61 | 0.00021 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | AY.99 | 0.002099 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | B.1.1.216 | 0.001781 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | B.1.1.317 | 0.000823 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | B.1.177.62 | 0.002384 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | B.1.36.1 | 0.002281 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | P.1.10 | 0.000539 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | P.2 | 0.000373 |
ORF3a | 259 | V259del | GTA | --- | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AU.1 | 0.001266 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.21 | 0.001898 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.1.285 | 0.006536 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.1.4 | 0.002976 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.149 | 0.003425 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.177.24 | 0.001295 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.237 | 0.004975 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.279 | 0.000514 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.473 | 0.019231 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.521 | 0.004975 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | C.36.3.1 | 0.002717 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | P.6 | 0.003145 |
ORF3a | 259 | V259del | GTA | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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