CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = V255del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF3a	255	V255del		del	GTT	---	4776	4776	1	26155-26157

Details of the mutation V255del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF3a	255	V255del	GTT	---	4776	4776	All	0.000913
ORF3a	255	V255del	GTT	---	1224	1224	B.1.1.7	0.001096
ORF3a	255	V255del	GTT	---	767	767	AY.4	0.001194
ORF3a	255	V255del	GTT	---	246	246	C.1	0.588517
ORF3a	255	V255del	GTT	---	233	233	C.1.2	0.991489
ORF3a	255	V255del	GTT	---	214	214	B.1.617.2	0.000806
ORF3a	255	V255del	GTT	---	141	141	AY.43	0.000625
ORF3a	255	V255del	GTT	---	124	124	B.1.2	0.001092
ORF3a	255	V255del	GTT	---	105	105	B.1.243	0.007306
ORF3a	255	V255del	GTT	---	82	82	B.1	0.000751
ORF3a	255	V255del	GTT	---	75	75	B.1.177.21	0.005735
ORF3a	255	V255del	GTT	---	66	66	B.1.351.2	0.01997
ORF3a	255	V255del	GTT	---	64	64	B.1.1.291	0.047513
ORF3a	255	V255del	GTT	---	62	62	AY.25	0.000373
ORF3a	255	V255del	GTT	---	62	62	B.1.1	0.001125
ORF3a	255	V255del	GTT	---	57	57	AY.44	0.000347
ORF3a	255	V255del	GTT	---	51	51	AY.103	0.000317
ORF3a	255	V255del	GTT	---	49	49	B.1.517	0.020922
ORF3a	255	V255del	GTT	---	48	48	AY.46.6	0.003466
ORF3a	255	V255del	GTT	---	43	43	AY.120	0.001599
ORF3a	255	V255del	GTT	---	38	38	AY.3	0.000378
ORF3a	255	V255del	GTT	---	37	37	AY.26	0.001047
ORF3a	255	V255del	GTT	---	36	36	B.1.177	0.000474
ORF3a	255	V255del	GTT	---	32	32	B.1.1.375	0.380952
ORF3a	255	V255del	GTT	---	30	30	AY.45	0.003651
ORF3a	255	V255del	GTT	---	28	28	B.1.221	0.001989
ORF3a	255	V255del	GTT	---	28	28	B.1.351	0.000832
ORF3a	255	V255del	GTT	---	26	26	B.1.258.17	0.002703
ORF3a	255	V255del	GTT	---	25	25	B.1.427	0.001262
ORF3a	255	V255del	GTT	---	25	25	B.1.621	0.002213
ORF3a	255	V255del	GTT	---	21	21	B.1.177.60	0.004587
ORF3a	255	V255del	GTT	---	20	20	B.1.258	0.001331
ORF3a	255	V255del	GTT	---	19	19	B.1.1.519	0.000755
ORF3a	255	V255del	GTT	---	18	18	C.8	0.080357
ORF3a	255	V255del	GTT	---	17	17	AY.39	0.00042
ORF3a	255	V255del	GTT	---	17	17	B.1.214.2	0.010192
ORF3a	255	V255del	GTT	---	17	17	B.1.36.36	0.010235
ORF3a	255	V255del	GTT	---	16	16	B.1.470	0.022472
ORF3a	255	V255del	GTT	---	16	16	B.1.637	0.001169
ORF3a	255	V255del	GTT	---	15	15	B.1.177.82	0.00716
ORF3a	255	V255del	GTT	---	15	15	B.1.561	0.005955
ORF3a	255	V255del	GTT	---	14	14	B.1.1.222	0.002856
ORF3a	255	V255del	GTT	---	14	14	B.1.525	0.001584
ORF3a	255	V255del	GTT	---	13	13	AY.53	0.003738
ORF3a	255	V255del	GTT	---	13	13	AY.54	0.00124
ORF3a	255	V255del	GTT	---	13	13	B.1.1.38	0.764706
ORF3a	255	V255del	GTT	---	13	13	B.1.1.434	0.004531
ORF3a	255	V255del	GTT	---	12	12	AY.29	0.000189
ORF3a	255	V255del	GTT	---	12	12	AY.36	0.001779
ORF3a	255	V255del	GTT	---	12	12	AY.6	0.000494
ORF3a	255	V255del	GTT	---	12	12	B.1.429	0.000282
ORF3a	255	V255del	GTT	---	12	12	B.1.526	0.000282
ORF3a	255	V255del	GTT	---	10	10	AY.75	0.00056
ORF3a	255	V255del	GTT	---	9	9	AY.5	0.000186
ORF3a	255	V255del	GTT	---	9	9	B.1.1.1	0.00294
ORF3a	255	V255del	GTT	---	9	9	B.1.36	0.001313
ORF3a	255	V255del	GTT	---	9	9	P.2	0.00168
ORF3a	255	V255del	GTT	---	8	8	AY.42	0.000322
ORF3a	255	V255del	GTT	---	8	8	B.1.160	0.00025
ORF3a	255	V255del	GTT	---	8	8	B.1.177.86	0.001468
ORF3a	255	V255del	GTT	---	8	8	B.1.633	0.333333
ORF3a	255	V255del	GTT	---	7	7	B.1.1.159	0.03271
ORF3a	255	V255del	GTT	---	7	7	B.1.240	0.001509
ORF3a	255	V255del	GTT	---	7	7	B.1.596	0.00061
ORF3a	255	V255del	GTT	---	6	6	AY.118	0.000376
ORF3a	255	V255del	GTT	---	6	6	AY.13	0.000966
ORF3a	255	V255del	GTT	---	6	6	AY.20	0.000233
ORF3a	255	V255del	GTT	---	6	6	AY.33	0.000401
ORF3a	255	V255del	GTT	---	6	6	AY.99.2	0.000553
ORF3a	255	V255del	GTT	---	6	6	B.1.1.372	0.004132
ORF3a	255	V255del	GTT	---	6	6	B.1.177.84	0.04
ORF3a	255	V255del	GTT	---	5	5	AY.100	0.00023
ORF3a	255	V255del	GTT	---	5	5	AY.3.1	0.000426
ORF3a	255	V255del	GTT	---	5	5	B	0.000639
ORF3a	255	V255del	GTT	---	5	5	B.1.1.316	0.004625
ORF3a	255	V255del	GTT	---	5	5	B.1.1.514	0.192308
ORF3a	255	V255del	GTT	---	5	5	B.1.237	0.024876
ORF3a	255	V255del	GTT	---	5	5	B.1.543	0.05
ORF3a	255	V255del	GTT	---	5	5	P.1	0.000079
ORF3a	255	V255del	GTT	---	4	4		0.222222
ORF3a	255	V255del	GTT	---	4	4	AY.16.1	0.00188
ORF3a	255	V255del	GTT	---	4	4	AY.84	0.00175
ORF3a	255	V255del	GTT	---	4	4	AY.98	0.000316
ORF3a	255	V255del	GTT	---	4	4	B.1.1.318	0.001207
ORF3a	255	V255del	GTT	---	4	4	B.1.1.377	0.005525
ORF3a	255	V255del	GTT	---	4	4	B.1.189	0.017167
ORF3a	255	V255del	GTT	---	3	3	AY.111	0.000549
ORF3a	255	V255del	GTT	---	3	3	AY.117	0.000254
ORF3a	255	V255del	GTT	---	3	3	AY.16	0.001139
ORF3a	255	V255del	GTT	---	3	3	AY.34	0.000291
ORF3a	255	V255del	GTT	---	3	3	AY.4.2	0.000065
ORF3a	255	V255del	GTT	---	3	3	AY.46	0.000312
ORF3a	255	V255del	GTT	---	3	3	AY.47	0.000093
ORF3a	255	V255del	GTT	---	3	3	B.1.1.28	0.000934
ORF3a	255	V255del	GTT	---	3	3	B.1.1.284	0.000322
ORF3a	255	V255del	GTT	---	3	3	B.1.1.63	0.001157
ORF3a	255	V255del	GTT	---	3	3	B.1.1.70	0.001023
ORF3a	255	V255del	GTT	---	3	3	B.1.1.74	0.012931
ORF3a	255	V255del	GTT	---	3	3	B.1.177.32	0.004049
ORF3a	255	V255del	GTT	---	3	3	B.1.466.2	0.001174
ORF3a	255	V255del	GTT	---	3	3	B.1.628	0.001057
ORF3a	255	V255del	GTT	---	3	3	B.3	0.002492
ORF3a	255	V255del	GTT	---	3	3	C.37	0.000348
ORF3a	255	V255del	GTT	---	3	3	P.1.14	0.000143
ORF3a	255	V255del	GTT	---	2	2	AY.119	0.000071
ORF3a	255	V255del	GTT	---	2	2	AY.121	0.000271
ORF3a	255	V255del	GTT	---	2	2	AY.29.1	0.000441
ORF3a	255	V255del	GTT	---	2	2	AY.67	0.000929
ORF3a	255	V255del	GTT	---	2	2	AY.70	0.000417
ORF3a	255	V255del	GTT	---	2	2	AY.9.1	0.000167
ORF3a	255	V255del	GTT	---	2	2	AY.91	0.001461
ORF3a	255	V255del	GTT	---	2	2	AY.94	0.000885
ORF3a	255	V255del	GTT	---	2	2	AY.98.1	0.000097
ORF3a	255	V255del	GTT	---	2	2	B.1.1.189	0.003026
ORF3a	255	V255del	GTT	---	2	2	B.1.1.344	0.021505
ORF3a	255	V255del	GTT	---	2	2	B.1.1.388	0.090909
ORF3a	255	V255del	GTT	---	2	2	B.1.151	0.022222
ORF3a	255	V255del	GTT	---	2	2	B.1.177.4	0.000422
ORF3a	255	V255del	GTT	---	2	2	B.1.177.81	0.000379
ORF3a	255	V255del	GTT	---	2	2	B.1.199	0.008264
ORF3a	255	V255del	GTT	---	2	2	B.1.206	0.001631
ORF3a	255	V255del	GTT	---	2	2	B.1.3	0.005236
ORF3a	255	V255del	GTT	---	2	2	B.1.346	0.002621
ORF3a	255	V255del	GTT	---	2	2	B.1.36.31	0.003503
ORF3a	255	V255del	GTT	---	2	2	B.1.411	0.007407
ORF3a	255	V255del	GTT	---	2	2	B.1.438.1	0.000215
ORF3a	255	V255del	GTT	---	2	2	B.1.564	0.000852
ORF3a	255	V255del	GTT	---	2	2	B.1.609	0.000959
ORF3a	255	V255del	GTT	---	2	2	B.1.617.1	0.000258
ORF3a	255	V255del	GTT	---	2	2	B.1.620	0.001892
ORF3a	255	V255del	GTT	---	2	2	B.1.627	0.00404
ORF3a	255	V255del	GTT	---	2	2	B.1.635	0.035088
ORF3a	255	V255del	GTT	---	2	2	C.16	0.002121
ORF3a	255	V255del	GTT	---	2	2	C.6	0.074074
ORF3a	255	V255del	GTT	---	2	2	D.2	0.00015
ORF3a	255	V255del	GTT	---	2	2	Q.3	0.00029
ORF3a	255	V255del	GTT	---	2	2	R.1	0.00018
ORF3a	255	V255del	GTT	---	1	1	A.2	0.000662
ORF3a	255	V255del	GTT	---	1	1	A.2.5	0.000499
ORF3a	255	V255del	GTT	---	1	1	A.2.5.2	0.001572
ORF3a	255	V255del	GTT	---	1	1	AY.1	0.000396
ORF3a	255	V255del	GTT	---	1	1	AY.106	0.000335
ORF3a	255	V255del	GTT	---	1	1	AY.108	0.001103
ORF3a	255	V255del	GTT	---	1	1	AY.110	0.000113
ORF3a	255	V255del	GTT	---	1	1	AY.113	0.000142
ORF3a	255	V255del	GTT	---	1	1	AY.114	0.000231
ORF3a	255	V255del	GTT	---	1	1	AY.116	0.000287
ORF3a	255	V255del	GTT	---	1	1	AY.120.2	0.001285
ORF3a	255	V255del	GTT	---	1	1	AY.19	0.00114
ORF3a	255	V255del	GTT	---	1	1	AY.23	0.00007
ORF3a	255	V255del	GTT	---	1	1	AY.27	0.000065
ORF3a	255	V255del	GTT	---	1	1	AY.32	0.000532
ORF3a	255	V255del	GTT	---	1	1	AY.37	0.000316
ORF3a	255	V255del	GTT	---	1	1	AY.38	0.000499
ORF3a	255	V255del	GTT	---	1	1	AY.39.1	0.00004
ORF3a	255	V255del	GTT	---	1	1	AY.4.3	0.000842
ORF3a	255	V255del	GTT	---	1	1	AY.4.5	0.000107
ORF3a	255	V255del	GTT	---	1	1	AY.41	0.000294
ORF3a	255	V255del	GTT	---	1	1	AY.46.5	0.000198
ORF3a	255	V255del	GTT	---	1	1	AY.56	0.001605
ORF3a	255	V255del	GTT	---	1	1	AY.64	0.000595
ORF3a	255	V255del	GTT	---	1	1	AY.66	0.00107
ORF3a	255	V255del	GTT	---	1	1	AY.68	0.000274
ORF3a	255	V255del	GTT	---	1	1	AY.7	0.000196
ORF3a	255	V255del	GTT	---	1	1	AY.7.1	0.000113
ORF3a	255	V255del	GTT	---	1	1	AY.85	0.000427
ORF3a	255	V255del	GTT	---	1	1	AY.88	0.000884
ORF3a	255	V255del	GTT	---	1	1	AY.9	0.000068
ORF3a	255	V255del	GTT	---	1	1	AY.9.2.1	0.001976
ORF3a	255	V255del	GTT	---	1	1	AY.95	0.000761
ORF3a	255	V255del	GTT	---	1	1	AZ.5	0.003509
ORF3a	255	V255del	GTT	---	1	1	B.1.1.161	0.003534
ORF3a	255	V255del	GTT	---	1	1	B.1.1.192	0.002309
ORF3a	255	V255del	GTT	---	1	1	B.1.1.25	0.000569
ORF3a	255	V255del	GTT	---	1	1	B.1.1.258	0.003257
ORF3a	255	V255del	GTT	---	1	1	B.1.1.306	0.000438
ORF3a	255	V255del	GTT	---	1	1	B.1.1.311	0.000358
ORF3a	255	V255del	GTT	---	1	1	B.1.1.312	0.001912
ORF3a	255	V255del	GTT	---	1	1	B.1.1.33	0.000421
ORF3a	255	V255del	GTT	---	1	1	B.1.1.332	0.03125
ORF3a	255	V255del	GTT	---	1	1	B.1.1.368	0.003086
ORF3a	255	V255del	GTT	---	1	1	B.1.1.402	0.011111
ORF3a	255	V255del	GTT	---	1	1	B.1.1.417	0.002703
ORF3a	255	V255del	GTT	---	1	1	B.1.1.448	0.002033
ORF3a	255	V255del	GTT	---	1	1	B.1.1.464	0.001473
ORF3a	255	V255del	GTT	---	1	1	B.1.1.467	0.019231
ORF3a	255	V255del	GTT	---	1	1	B.1.1.485	0.016667
ORF3a	255	V255del	GTT	---	1	1	B.1.1.52	0.012195
ORF3a	255	V255del	GTT	---	1	1	B.1.104	0.00369
ORF3a	255	V255del	GTT	---	1	1	B.1.111	0.001175
ORF3a	255	V255del	GTT	---	1	1	B.1.177.10	0.000878
ORF3a	255	V255del	GTT	---	1	1	B.1.177.44	0.000519
ORF3a	255	V255del	GTT	---	1	1	B.1.177.45	0.000381
ORF3a	255	V255del	GTT	---	1	1	B.1.177.53	0.002392
ORF3a	255	V255del	GTT	---	1	1	B.1.177.7	0.000165
ORF3a	255	V255del	GTT	---	1	1	B.1.177.73	0.000566
ORF3a	255	V255del	GTT	---	1	1	B.1.177.75	0.001041
ORF3a	255	V255del	GTT	---	1	1	B.1.177.76	0.002494
ORF3a	255	V255del	GTT	---	1	1	B.1.177.77	0.000726
ORF3a	255	V255del	GTT	---	1	1	B.1.214.1	0.02
ORF3a	255	V255del	GTT	---	1	1	B.1.243.2	0.014493
ORF3a	255	V255del	GTT	---	1	1	B.1.264	0.012346
ORF3a	255	V255del	GTT	---	1	1	B.1.265	0.001271
ORF3a	255	V255del	GTT	---	1	1	B.1.298	0.002114
ORF3a	255	V255del	GTT	---	1	1	B.1.311	0.000275
ORF3a	255	V255del	GTT	---	1	1	B.1.319	0.003049
ORF3a	255	V255del	GTT	---	1	1	B.1.337	0.005587
ORF3a	255	V255del	GTT	---	1	1	B.1.36.1	0.00114
ORF3a	255	V255del	GTT	---	1	1	B.1.36.26	0.002857
ORF3a	255	V255del	GTT	---	1	1	B.1.36.29	0.000517
ORF3a	255	V255del	GTT	---	1	1	B.1.36.8	0.001
ORF3a	255	V255del	GTT	---	1	1	B.1.361	0.001289
ORF3a	255	V255del	GTT	---	1	1	B.1.380	0.006623
ORF3a	255	V255del	GTT	---	1	1	B.1.381	0.007812
ORF3a	255	V255del	GTT	---	1	1	B.1.409	0.000781
ORF3a	255	V255del	GTT	---	1	1	B.1.426	0.001009
ORF3a	255	V255del	GTT	---	1	1	B.1.453	0.003236
ORF3a	255	V255del	GTT	---	1	1	B.1.462	0.007246
ORF3a	255	V255del	GTT	---	1	1	B.1.497	0.000315
ORF3a	255	V255del	GTT	---	1	1	B.1.507	0.011236
ORF3a	255	V255del	GTT	---	1	1	B.1.582	0.000491
ORF3a	255	V255del	GTT	---	1	1	B.1.595	0.000261
ORF3a	255	V255del	GTT	---	1	1	B.1.605	0.005952
ORF3a	255	V255del	GTT	---	1	1	B.1.616	0.02439
ORF3a	255	V255del	GTT	---	1	1	B.1.621.1	0.000506
ORF3a	255	V255del	GTT	---	1	1	B.1.629	0.013333
ORF3a	255	V255del	GTT	---	1	1	B.1.81	0.021277
ORF3a	255	V255del	GTT	---	1	1	B.1.88.1	0.004808
ORF3a	255	V255del	GTT	---	1	1	B.1.91	0.002075
ORF3a	255	V255del	GTT	---	1	1	C.1.1	0.076923
ORF3a	255	V255del	GTT	---	1	1	C.14	0.004329
ORF3a	255	V255del	GTT	---	1	1	C.18	0.002591
ORF3a	255	V255del	GTT	---	1	1	C.35	0.000774
ORF3a	255	V255del	GTT	---	1	1	N.5	0.001767
ORF3a	255	V255del	GTT	---	1	1	W.3	0.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.