CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = V202V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a202V202VsyngtAgtG143213360.93296125996-25998
ORF3a202V202VsyngtAgtT1432500.034916225996-25998
ORF3a202V202VsyngtAgtC1432460.032122925996-25998

Details of the mutation V202V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a202V202VgtAgtG13361432All0.000256
ORF3a202V202VgtAgtT501432All0.00001
ORF3a202V202VgtAgtC461432All0.000009
ORF3a202V202VgtAgtG279279B.1.617.20.001051
ORF3a202V202VgtAgtG119135B.1.1.70.000107
ORF3a202V202VgtAgtC12135B.1.1.70.000011
ORF3a202V202VgtAgtT4135B.1.1.70.000004
ORF3a202V202VgtAgtG132132AY.40.000205
ORF3a202V202VgtAgtG8383AY.1020.002201
ORF3a202V202VgtAgtG7878B.1.5260.001833
ORF3a202V202VgtAgtG7475AY.440.00045
ORF3a202V202VgtAgtT175AY.440.000006
ORF3a202V202VgtAgtG4848AY.250.000289
ORF3a202V202VgtAgtG2548AY.430.000111
ORF3a202V202VgtAgtC2348AY.430.000102
ORF3a202V202VgtAgtG4444B.1.1.4170.118919
ORF3a202V202VgtAgtG3838AY.1180.002381
ORF3a202V202VgtAgtG3737AY.260.001047
ORF3a202V202VgtAgtG3737B.1.5270.137037
ORF3a202V202VgtAgtG3334AY.1030.000205
ORF3a202V202VgtAgtT134AY.1030.000006
ORF3a202V202VgtAgtG2527AY.30.000249
ORF3a202V202VgtAgtC227AY.30.00002
ORF3a202V202VgtAgtT2727B.1.1.2740.136364
ORF3a202V202VgtAgtG2525B.1.177.440.012974
ORF3a202V202VgtAgtG2525B.1.4290.000588
ORF3a202V202VgtAgtG2121AY.390.000519
ORF3a202V202VgtAgtG1516B.10.000137
ORF3a202V202VgtAgtT116B.10.000009
ORF3a202V202VgtAgtG1212AY.290.000189
ORF3a202V202VgtAgtG710B.1.10.000127
ORF3a202V202VgtAgtT310B.1.10.000054
ORF3a202V202VgtAgtG910B.1.1770.000119
ORF3a202V202VgtAgtT110B.1.1770.000013
ORF3a202V202VgtAgtT58AY.1190.000177
ORF3a202V202VgtAgtG38AY.1190.000106
ORF3a202V202VgtAgtG88AY.4.20.000174
ORF3a202V202VgtAgtG88AY.450.000973
ORF3a202V202VgtAgtC68B.1.5250.000679
ORF3a202V202VgtAgtG28B.1.5250.000226
ORF3a202V202VgtAgtG77AY.1160.002007
ORF3a202V202VgtAgtG77AY.610.000733
ORF3a202V202VgtAgtG66AY.550.005505
ORF3a202V202VgtAgtG66B.1.4270.000303
ORF3a202V202VgtAgtG66P.1.140.000287
ORF3a202V202VgtAgtG55AY.1170.000423
ORF3a202V202VgtAgtG45AY.200.000155
ORF3a202V202VgtAgtT15AY.200.000039
ORF3a202V202VgtAgtG55AY.460.00052
ORF3a202V202VgtAgtG55AY.980.000395
ORF3a202V202VgtAgtG55B.1.20.000044
ORF3a202V202VgtAgtG44A.270.006623
ORF3a202V202VgtAgtG44AY.39.10.000158
ORF3a202V202VgtAgtG44AY.790.004843
ORF3a202V202VgtAgtG44AY.9.20.000147
ORF3a202V202VgtAgtT44B.1.177.570.001124
ORF3a202V202VgtAgtG44B.1.2400.000862
ORF3a202V202VgtAgtG44B.1.3960.002823
ORF3a202V202VgtAgtG33AY.4.50.000322
ORF3a202V202VgtAgtG33AY.540.000286
ORF3a202V202VgtAgtG33AY.75.10.000541
ORF3a202V202VgtAgtG33AY.90.000203
ORF3a202V202VgtAgtG33B.1.1.3260.005282
ORF3a202V202VgtAgtG33B.1.1.4860.004732
ORF3a202V202VgtAgtG33B.1.2580.0002
ORF3a202V202VgtAgtG22AY.1000.000092
ORF3a202V202VgtAgtG22AY.1060.00067
ORF3a202V202VgtAgtG22AY.470.000062
ORF3a202V202VgtAgtG22AY.50.000041
ORF3a202V202VgtAgtG22AY.520.001629
ORF3a202V202VgtAgtG22B.1.1.700.000682
ORF3a202V202VgtAgtG22B.1.177.210.000153
ORF3a202V202VgtAgtG22B.1.3890.002004
ORF3a202V202VgtAgtG22D.20.00015
ORF3a202V202VgtAgtG22P.10.000032
ORF3a202V202VgtAgtG11AY.1050.000643
ORF3a202V202VgtAgtG11AY.1130.000142
ORF3a202V202VgtAgtG11AY.1200.000037
ORF3a202V202VgtAgtG11AY.130.000161
ORF3a202V202VgtAgtG11AY.330.000067
ORF3a202V202VgtAgtG11AY.34.10.00051
ORF3a202V202VgtAgtG11AY.420.00004
ORF3a202V202VgtAgtG11AY.46.10.001027
ORF3a202V202VgtAgtG11AY.46.20.000635
ORF3a202V202VgtAgtG11AY.5.30.000337
ORF3a202V202VgtAgtG11AY.580.000907
ORF3a202V202VgtAgtG11AY.690.000187
ORF3a202V202VgtAgtG11AY.840.000437
ORF3a202V202VgtAgtG11AY.890.004902
ORF3a202V202VgtAgtG11AY.9.10.000084
ORF3a202V202VgtAgtG11AY.98.10.000048
ORF3a202V202VgtAgtG11AY.99.20.000092
ORF3a202V202VgtAgtC11B0.000128
ORF3a202V202VgtAgtC11B.1.1.1940.00495
ORF3a202V202VgtAgtT11B.1.1.2200.001859
ORF3a202V202VgtAgtG11B.1.1.2980.000862
ORF3a202V202VgtAgtG11B.1.1.4160.000905
ORF3a202V202VgtAgtG11B.1.1.4670.019231
ORF3a202V202VgtAgtG11B.1.1600.000031
ORF3a202V202VgtAgtG11B.1.177.70.000165
ORF3a202V202VgtAgtG11B.1.2340.000132
ORF3a202V202VgtAgtG11B.1.3510.00003
ORF3a202V202VgtAgtG11B.1.36.290.000517
ORF3a202V202VgtAgtG11B.1.466.20.000391
ORF3a202V202VgtAgtC11B.1.6360.006711
ORF3a202V202VgtAgtG11B.400.000364
ORF3a202V202VgtAgtT11B.6.10.026316
ORF3a202V202VgtAgtG11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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