CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = V13L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a13V13LnonsynGtaTta816974350.91014825429-25431
ORF3a13V13LnonsynGtaCta81697340.089851925429-25431

Details of the mutation V13L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a13V13LGtaTta74358169All0.001422
ORF3a13V13LGtaCta7348169All0.00014
ORF3a13V13LGtaTta15841589B.10.014509
ORF3a13V13LGtaCta51589B.10.000046
ORF3a13V13LGtaTta867867B.1.3910.977452
ORF3a13V13LGtaTta706730B.1.1.70.000632
ORF3a13V13LGtaCta24730B.1.1.70.000021
ORF3a13V13LGtaTta290514AY.40.000451
ORF3a13V13LGtaCta224514AY.40.000349
ORF3a13V13LGtaTta267317AY.1030.001658
ORF3a13V13LGtaCta50317AY.1030.00031
ORF3a13V13LGtaTta240271B.1.617.20.000904
ORF3a13V13LGtaCta31271B.1.617.20.000117
ORF3a13V13LGtaTta250250B.1.1040.922509
ORF3a13V13LGtaCta144235B.1.20.001268
ORF3a13V13LGtaTta91235B.1.20.000801
ORF3a13V13LGtaTta198198B.1.88.10.951923
ORF3a13V13LGtaTta184194AY.430.000815
ORF3a13V13LGtaCta10194AY.430.000044
ORF3a13V13LGtaTta173174AY.390.004275
ORF3a13V13LGtaCta1174AY.390.000025
ORF3a13V13LGtaTta149149B.1.2520.986755
ORF3a13V13LGtaTta127132B.1.10.002304
ORF3a13V13LGtaCta5132B.1.10.000091
ORF3a13V13LGtaTta118121P.10.001859
ORF3a13V13LGtaCta3121P.10.000047
ORF3a13V13LGtaCta73106AY.1020.001936
ORF3a13V13LGtaTta33106AY.1020.000875
ORF3a13V13LGtaTta100102AY.250.000601
ORF3a13V13LGtaCta2102AY.250.000012
ORF3a13V13LGtaTta9595B.1.6210.008409
ORF3a13V13LGtaTta7684AY.440.000463
ORF3a13V13LGtaCta884AY.440.000049
ORF3a13V13LGtaTta8181B.1.360.011818
ORF3a13V13LGtaTta7880AY.230.00544
ORF3a13V13LGtaCta280AY.230.000139
ORF3a13V13LGtaTta5674AY.30.000557
ORF3a13V13LGtaCta1874AY.30.000179
ORF3a13V13LGtaTta6771B.1.1770.000882
ORF3a13V13LGtaCta471B.1.1770.000053
ORF3a13V13LGtaTta6969B.1.2501
ORF3a13V13LGtaTta5555B.1.4380.359477
ORF3a13V13LGtaTta4051B.1.1.2220.00816
ORF3a13V13LGtaCta1151B.1.1.2220.002244
ORF3a13V13LGtaTta4950B.1.1600.001528
ORF3a13V13LGtaCta150B.1.1600.000031
ORF3a13V13LGtaTta5050B.1.2430.003479
ORF3a13V13LGtaTta4646B.1.2511
ORF3a13V13LGtaTta4242B.1.5250.004753
ORF3a13V13LGtaTta4040B.1.2541
ORF3a13V13LGtaTta4040B.1.5591
ORF3a13V13LGtaTta3838AY.50.000785
ORF3a13V13LGtaCta1835AY.290.000284
ORF3a13V13LGtaTta1735AY.290.000268
ORF3a13V13LGtaTta3434B.1.2481
ORF3a13V13LGtaTta3033AY.330.002003
ORF3a13V13LGtaCta333AY.330.0002
ORF3a13V13LGtaTta3333C.370.00383
ORF3a13V13LGtaTta3132B.1.1.280.009648
ORF3a13V13LGtaCta132B.1.1.280.000311
ORF3a13V13LGtaTta3031B.1.1.5190.001191
ORF3a13V13LGtaCta131B.1.1.5190.00004
ORF3a13V13LGtaTta3131B.1.177.320.041835
ORF3a13V13LGtaTta2828B.1.1.330.011785
ORF3a13V13LGtaTta2728B.1.3510.000803
ORF3a13V13LGtaCta128B.1.3510.00003
ORF3a13V13LGtaTta2727AY.410.007937
ORF3a13V13LGtaTta2626AY.300.010289
ORF3a13V13LGtaTta2425P.1.150.005576
ORF3a13V13LGtaCta125P.1.150.000232
ORF3a13V13LGtaTta2224AY.260.000623
ORF3a13V13LGtaCta224AY.260.000057
ORF3a13V13LGtaTta2323B.1.596.10.214953
ORF3a13V13LGtaTta1922B.1.4290.000447
ORF3a13V13LGtaCta322B.1.4290.000071
ORF3a13V13LGtaTta2121B.1.36.10.023945
ORF3a13V13LGtaTta2020B.1.5571
ORF3a13V13LGtaTta2020P.1.20.023121
ORF3a13V13LGtaTta1919B.1.1.2190.095
ORF3a13V13LGtaTta1518AY.840.006562
ORF3a13V13LGtaCta318AY.840.001312
ORF3a13V13LGtaTta1617B.1.5260.000376
ORF3a13V13LGtaCta117B.1.5260.000024
ORF3a13V13LGtaTta1416AY.9.20.000514
ORF3a13V13LGtaCta216AY.9.20.000073
ORF3a13V13LGtaTta1616B.1.2491
ORF3a13V13LGtaTta1015AY.9.10.000837
ORF3a13V13LGtaCta515AY.9.10.000419
ORF3a13V13LGtaTta1515B.1.1.270.084746
ORF3a13V13LGtaTta1414AY.7.10.001578
ORF3a13V13LGtaTta1113AY.90.000744
ORF3a13V13LGtaCta213AY.90.000135
ORF3a13V13LGtaTta1213AY.98.10.000581
ORF3a13V13LGtaCta113AY.98.10.000048
ORF3a13V13LGtaTta1313B.1.177.60.012695
ORF3a13V13LGtaTta1213B.1.36.290.006208
ORF3a13V13LGtaCta113B.1.36.290.000517
ORF3a13V13LGtaTta1212B0.001534
ORF3a13V13LGtaTta1011AY.1000.00046
ORF3a13V13LGtaCta111AY.1000.000046
ORF3a13V13LGtaCta811AY.1190.000282
ORF3a13V13LGtaTta311AY.1190.000106
ORF3a13V13LGtaCta811AY.39.10.000317
ORF3a13V13LGtaTta311AY.39.10.000119
ORF3a13V13LGtaTta1111B.1.1.4220.5
ORF3a13V13LGtaTta1111B.1.1790.041353
ORF3a13V13LGtaTta810AY.420.000322
ORF3a13V13LGtaCta210AY.420.00008
ORF3a13V13LGtaTta910AY.470.00028
ORF3a13V13LGtaCta110AY.470.000031
ORF3a13V13LGtaTta910B.1.1.2980.007759
ORF3a13V13LGtaCta110B.1.1.2980.000862
ORF3a13V13LGtaTta79AY.1200.00026
ORF3a13V13LGtaCta29AY.1200.000074
ORF3a13V13LGtaTta99AY.200.00035
ORF3a13V13LGtaTta79AY.5.30.002362
ORF3a13V13LGtaCta29AY.5.30.000675
ORF3a13V13LGtaCta69B.1.2340.000792
ORF3a13V13LGtaTta39B.1.2340.000396
ORF3a13V13LGtaTta88AY.650.004264
ORF3a13V13LGtaTta88B.1.177.870.005822
ORF3a13V13LGtaTta88P.20.001493
ORF3a13V13LGtaTta77AY.340.000679
ORF3a13V13LGtaTta77AY.920.002011
ORF3a13V13LGtaTta77B.1.3110.001922
ORF3a13V13LGtaCta77B.1.5610.002779
ORF3a13V13LGtaTta77B.1.5640.002981
ORF3a13V13LGtaTta77B.1.6270.014141
ORF3a13V13LGtaTta77B.1.6280.002467
ORF3a13V13LGtaTta66AY.140.000528
ORF3a13V13LGtaTta66AY.4.50.000645
ORF3a13V13LGtaTta66AY.99.20.000553
ORF3a13V13LGtaTta66B.1.258.170.000624
ORF3a13V13LGtaTta66B.1.3960.004234
ORF3a13V13LGtaTta66B.1.4110.022222
ORF3a13V13LGtaTta66B.1.80.011834
ORF3a13V13LGtaTta55AY.1060.001674
ORF3a13V13LGtaTta45AY.4.20.000087
ORF3a13V13LGtaCta15AY.4.20.000022
ORF3a13V13LGtaCta45AY.46.60.000289
ORF3a13V13LGtaTta15AY.46.60.000072
ORF3a13V13LGtaTta55AY.980.000395
ORF3a13V13LGtaTta55B.1.2210.000355
ORF3a13V13LGtaTta55B.1.3890.00501
ORF3a13V13LGtaTta55B.1.466.20.001956
ORF3a13V13LGtaTta55B.1.5750.001517
ORF3a13V13LGtaTta44AY.1210.000541
ORF3a13V13LGtaTta34AY.360.000445
ORF3a13V13LGtaCta14AY.360.000148
ORF3a13V13LGtaTta44AY.460.000416
ORF3a13V13LGtaTta44B.1.1.2160.003562
ORF3a13V13LGtaTta44B.1.1.3250.102564
ORF3a13V13LGtaTta34B.1.2580.0002
ORF3a13V13LGtaCta14B.1.2580.000067
ORF3a13V13LGtaTta44B.1.5960.000349
ORF3a13V13LGtaTta44C.360.003643
ORF3a13V13LGtaTta44P.1.10.001271
ORF3a13V13LGtaTta44Q.30.00058
ORF3a13V13LGtaTta33AY.1160.00086
ORF3a13V13LGtaTta23AY.1170.000169
ORF3a13V13LGtaCta13AY.1170.000085
ORF3a13V13LGtaTta33AY.350.000699
ORF3a13V13LGtaTta33AY.380.001498
ORF3a13V13LGtaTta23AY.610.00021
ORF3a13V13LGtaCta13AY.610.000105
ORF3a13V13LGtaTta23AY.70.000392
ORF3a13V13LGtaCta13AY.70.000196
ORF3a13V13LGtaTta33B.1.1.1860.010309
ORF3a13V13LGtaTta33B.1.1.2310.009288
ORF3a13V13LGtaTta23B.1.1.3060.000877
ORF3a13V13LGtaCta13B.1.1.3060.000438
ORF3a13V13LGtaTta33B.1.1.3180.000905
ORF3a13V13LGtaTta33B.1.1.3690.001339
ORF3a13V13LGtaTta33B.1.1.390.001529
ORF3a13V13LGtaTta33B.1.3360.007317
ORF3a13V13LGtaTta33B.1.3670.002377
ORF3a13V13LGtaTta33B.1.3990.005803
ORF3a13V13LGtaTta23B.1.621.10.001012
ORF3a13V13LGtaCta13B.1.621.10.000506
ORF3a13V13LGtaTta33B.1.6370.000219
ORF3a13V13LGtaTta33P.1.70.000958
ORF3a13V13LGtaTta33P.50.041096
ORF3a13V13LGtaTta33Q.10.000379
ORF3a13V13LGtaTta22A.270.003311
ORF3a13V13LGtaTta22AY.10.000791
ORF3a13V13LGtaTta22AY.1100.000225
ORF3a13V13LGtaTta22AY.1110.000366
ORF3a13V13LGtaTta22AY.116.10.000623
ORF3a13V13LGtaTta22AY.160.000759
ORF3a13V13LGtaTta12AY.450.000122
ORF3a13V13LGtaCta12AY.450.000122
ORF3a13V13LGtaCta22AY.46.50.000397
ORF3a13V13LGtaTta22AY.550.001835
ORF3a13V13LGtaTta12AY.590.00053
ORF3a13V13LGtaCta12AY.590.00053
ORF3a13V13LGtaTta22AY.690.000373
ORF3a13V13LGtaTta22AY.780.003082
ORF3a13V13LGtaTta22AY.850.000854
ORF3a13V13LGtaTta22AY.880.001768
ORF3a13V13LGtaTta22B.1.1.3170.000823
ORF3a13V13LGtaTta22B.1.1.3720.001377
ORF3a13V13LGtaCta22B.1.1.4420.037037
ORF3a13V13LGtaTta22B.1.1.460.008734
ORF3a13V13LGtaTta22B.1.1.5260.007092
ORF3a13V13LGtaTta22B.1.1.630.000772
ORF3a13V13LGtaTta22B.1.1430.042553
ORF3a13V13LGtaTta22B.1.160.160.001859
ORF3a13V13LGtaTta22B.1.160.320.008584
ORF3a13V13LGtaTta22B.1.1670.015625
ORF3a13V13LGtaTta12B.1.177.730.000566
ORF3a13V13LGtaCta12B.1.177.730.000566
ORF3a13V13LGtaTta22B.1.177.820.000955
ORF3a13V13LGtaTta22B.1.2320.001075
ORF3a13V13LGtaTta22B.1.258.140.001961
ORF3a13V13LGtaTta22B.1.36.380.003284
ORF3a13V13LGtaTta22B.1.4270.000101
ORF3a13V13LGtaTta22B.1.4970.00063
ORF3a13V13LGtaTta22B.1.5440.012048
ORF3a13V13LGtaTta22B.1.5450.028986
ORF3a13V13LGtaTta22B.1.5670.006667
ORF3a13V13LGtaTta22B.1.6090.000959
ORF3a13V13LGtaTta22B.1.617.10.000258
ORF3a13V13LGtaTta22C.36.30.001134
ORF3a13V13LGtaTta22P.1.120.000968
ORF3a13V13LGtaTta22P.1.140.000096
ORF3a13V13LGtaCta22P.70.008734
ORF3a13V13LGtaTta22Q.80.00033
ORF3a13V13LGtaTta11A.20.000662
ORF3a13V13LGtaTta11A.230.010526
ORF3a13V13LGtaCta11A.280.002646
ORF3a13V13LGtaTta11A.30.002096
ORF3a13V13LGtaTta11AH.30.003802
ORF3a13V13LGtaTta11AV.10.005051
ORF3a13V13LGtaCta11AY.100.00053
ORF3a13V13LGtaTta11AY.1010.00049
ORF3a13V13LGtaTta11AY.1050.000643
ORF3a13V13LGtaTta11AY.1070.000466
ORF3a13V13LGtaTta11AY.1130.000142
ORF3a13V13LGtaTta11AY.1180.000063
ORF3a13V13LGtaTta11AY.120.10.000321
ORF3a13V13LGtaTta11AY.150.002222
ORF3a13V13LGtaTta11AY.16.10.00047
ORF3a13V13LGtaTta11AY.270.000065
ORF3a13V13LGtaTta11AY.3.10.000085
ORF3a13V13LGtaCta11AY.34.10.00051
ORF3a13V13LGtaTta11AY.4.30.000842
ORF3a13V13LGtaTta11AY.400.000964
ORF3a13V13LGtaTta11AY.46.20.000635
ORF3a13V13LGtaTta11AY.520.000814
ORF3a13V13LGtaTta11AY.540.000095
ORF3a13V13LGtaCta11AY.560.001605
ORF3a13V13LGtaTta11AY.60.000041
ORF3a13V13LGtaTta11AY.670.000464
ORF3a13V13LGtaTta11AY.720.001361
ORF3a13V13LGtaTta11AY.740.000116
ORF3a13V13LGtaTta11AY.750.000056
ORF3a13V13LGtaCta11AY.75.10.00018
ORF3a13V13LGtaCta11AY.800.001129
ORF3a13V13LGtaTta11AY.830.001724
ORF3a13V13LGtaTta11AY.890.004902
ORF3a13V13LGtaTta11AY.950.000761
ORF3a13V13LGtaTta11AY.990.001049
ORF3a13V13LGtaTta11AZ.20.000821
ORF3a13V13LGtaTta11B.1.1.10.000327
ORF3a13V13LGtaTta11B.1.1.150.013514
ORF3a13V13LGtaCta11B.1.1.1740.003378
ORF3a13V13LGtaTta11B.1.1.1980.001468
ORF3a13V13LGtaTta11B.1.1.2010.02439
ORF3a13V13LGtaTta11B.1.1.2180.007692
ORF3a13V13LGtaTta11B.1.1.2200.001859
ORF3a13V13LGtaTta11B.1.1.250.000569
ORF3a13V13LGtaCta11B.1.1.2790.001121
ORF3a13V13LGtaTta11B.1.1.2910.000742
ORF3a13V13LGtaTta11B.1.1.3050.003861
ORF3a13V13LGtaTta11B.1.1.3160.000925
ORF3a13V13LGtaTta11B.1.1.3630.005988
ORF3a13V13LGtaTta11B.1.1.3980.003226
ORF3a13V13LGtaTta11B.1.1.40.002976
ORF3a13V13LGtaTta11B.1.1.440.00241
ORF3a13V13LGtaTta11B.1.1.4480.002033
ORF3a13V13LGtaTta11B.1.1.500.000679
ORF3a13V13LGtaTta11B.1.1.5170.006803
ORF3a13V13LGtaTta11B.1.1.700.000341
ORF3a13V13LGtaTta11B.1.1.710.006061
ORF3a13V13LGtaTta11B.1.1110.001175
ORF3a13V13LGtaTta11B.1.1150.021739
ORF3a13V13LGtaTta11B.1.1370.5
ORF3a13V13LGtaTta11B.1.1420.002899
ORF3a13V13LGtaCta11B.1.177.120.000152
ORF3a13V13LGtaTta11B.1.177.170.000821
ORF3a13V13LGtaTta11B.1.177.600.000218
ORF3a13V13LGtaTta11B.1.177.70.000165
ORF3a13V13LGtaTta11B.1.177.750.001041
ORF3a13V13LGtaTta11B.1.177.810.000189
ORF3a13V13LGtaCta11B.1.177.860.000183
ORF3a13V13LGtaTta11B.1.1890.004292
ORF3a13V13LGtaTta11B.1.1990.004132
ORF3a13V13LGtaTta11B.1.2390.001221
ORF3a13V13LGtaTta11B.1.2400.000216
ORF3a13V13LGtaTta11B.1.2980.002114
ORF3a13V13LGtaCta11B.1.30.002618
ORF3a13V13LGtaTta11B.1.3190.003049
ORF3a13V13LGtaTta11B.1.3240.001605
ORF3a13V13LGtaTta11B.1.3430.020833
ORF3a13V13LGtaTta11B.1.350.008475
ORF3a13V13LGtaTta11B.1.351.20.000303
ORF3a13V13LGtaTta11B.1.351.30.000876
ORF3a13V13LGtaTta11B.1.36.180.00042
ORF3a13V13LGtaTta11B.1.36.280.005747
ORF3a13V13LGtaTta11B.1.36.350.002604
ORF3a13V13LGtaTta11B.1.3710.001122
ORF3a13V13LGtaTta11B.1.3820.008929
ORF3a13V13LGtaTta11B.1.4000.000429
ORF3a13V13LGtaTta11B.1.415.10.007576
ORF3a13V13LGtaTta11B.1.4430.004673
ORF3a13V13LGtaTta11B.1.4620.007246
ORF3a13V13LGtaTta11B.1.4700.001404
ORF3a13V13LGtaTta11B.1.4920.007042
ORF3a13V13LGtaCta11B.1.4990.00105
ORF3a13V13LGtaTta11B.1.5030.002488
ORF3a13V13LGtaTta11B.1.5230.002451
ORF3a13V13LGtaTta11B.1.5330.009615
ORF3a13V13LGtaTta11B.1.5950.000261
ORF3a13V13LGtaCta11B.1.5970.00463
ORF3a13V13LGtaTta11B.1.6230.000536
ORF3a13V13LGtaTta11B.1.6360.006711
ORF3a13V13LGtaTta11B.1.930.000934
ORF3a13V13LGtaTta11B.1.940.027027
ORF3a13V13LGtaTta11B.290.003509
ORF3a13V13LGtaTta11D.20.000075
ORF3a13V13LGtaTta11P.1.100.000269
ORF3a13V13LGtaTta11P.1.160.000374
ORF3a13V13LGtaTta11P.1.170.000162
ORF3a13V13LGtaTta11P.1.40.000977
ORF3a13V13LGtaTta11R.10.00009
ORF3a13V13LGtaCta11R.20.014493

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.