CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 13 | V13L | nonsyn | Gta | Tta | 8169 | 7435 | 0.910148 | 25429-25431 | |
ORF3a | 13 | V13L | nonsyn | Gta | Cta | 8169 | 734 | 0.0898519 | 25429-25431 |
Details of the mutation V13L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 13 | V13L | Gta | Tta | 7435 | 8169 | All | 0.001422 |
ORF3a | 13 | V13L | Gta | Cta | 734 | 8169 | All | 0.00014 |
ORF3a | 13 | V13L | Gta | Tta | 1584 | 1589 | B.1 | 0.014509 |
ORF3a | 13 | V13L | Gta | Cta | 5 | 1589 | B.1 | 0.000046 |
ORF3a | 13 | V13L | Gta | Tta | 867 | 867 | B.1.391 | 0.977452 |
ORF3a | 13 | V13L | Gta | Tta | 706 | 730 | B.1.1.7 | 0.000632 |
ORF3a | 13 | V13L | Gta | Cta | 24 | 730 | B.1.1.7 | 0.000021 |
ORF3a | 13 | V13L | Gta | Tta | 290 | 514 | AY.4 | 0.000451 |
ORF3a | 13 | V13L | Gta | Cta | 224 | 514 | AY.4 | 0.000349 |
ORF3a | 13 | V13L | Gta | Tta | 267 | 317 | AY.103 | 0.001658 |
ORF3a | 13 | V13L | Gta | Cta | 50 | 317 | AY.103 | 0.00031 |
ORF3a | 13 | V13L | Gta | Tta | 240 | 271 | B.1.617.2 | 0.000904 |
ORF3a | 13 | V13L | Gta | Cta | 31 | 271 | B.1.617.2 | 0.000117 |
ORF3a | 13 | V13L | Gta | Tta | 250 | 250 | B.1.104 | 0.922509 |
ORF3a | 13 | V13L | Gta | Cta | 144 | 235 | B.1.2 | 0.001268 |
ORF3a | 13 | V13L | Gta | Tta | 91 | 235 | B.1.2 | 0.000801 |
ORF3a | 13 | V13L | Gta | Tta | 198 | 198 | B.1.88.1 | 0.951923 |
ORF3a | 13 | V13L | Gta | Tta | 184 | 194 | AY.43 | 0.000815 |
ORF3a | 13 | V13L | Gta | Cta | 10 | 194 | AY.43 | 0.000044 |
ORF3a | 13 | V13L | Gta | Tta | 173 | 174 | AY.39 | 0.004275 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 174 | AY.39 | 0.000025 |
ORF3a | 13 | V13L | Gta | Tta | 149 | 149 | B.1.252 | 0.986755 |
ORF3a | 13 | V13L | Gta | Tta | 127 | 132 | B.1.1 | 0.002304 |
ORF3a | 13 | V13L | Gta | Cta | 5 | 132 | B.1.1 | 0.000091 |
ORF3a | 13 | V13L | Gta | Tta | 118 | 121 | P.1 | 0.001859 |
ORF3a | 13 | V13L | Gta | Cta | 3 | 121 | P.1 | 0.000047 |
ORF3a | 13 | V13L | Gta | Cta | 73 | 106 | AY.102 | 0.001936 |
ORF3a | 13 | V13L | Gta | Tta | 33 | 106 | AY.102 | 0.000875 |
ORF3a | 13 | V13L | Gta | Tta | 100 | 102 | AY.25 | 0.000601 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 102 | AY.25 | 0.000012 |
ORF3a | 13 | V13L | Gta | Tta | 95 | 95 | B.1.621 | 0.008409 |
ORF3a | 13 | V13L | Gta | Tta | 76 | 84 | AY.44 | 0.000463 |
ORF3a | 13 | V13L | Gta | Cta | 8 | 84 | AY.44 | 0.000049 |
ORF3a | 13 | V13L | Gta | Tta | 81 | 81 | B.1.36 | 0.011818 |
ORF3a | 13 | V13L | Gta | Tta | 78 | 80 | AY.23 | 0.00544 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 80 | AY.23 | 0.000139 |
ORF3a | 13 | V13L | Gta | Tta | 56 | 74 | AY.3 | 0.000557 |
ORF3a | 13 | V13L | Gta | Cta | 18 | 74 | AY.3 | 0.000179 |
ORF3a | 13 | V13L | Gta | Tta | 67 | 71 | B.1.177 | 0.000882 |
ORF3a | 13 | V13L | Gta | Cta | 4 | 71 | B.1.177 | 0.000053 |
ORF3a | 13 | V13L | Gta | Tta | 69 | 69 | B.1.250 | 1 |
ORF3a | 13 | V13L | Gta | Tta | 55 | 55 | B.1.438 | 0.359477 |
ORF3a | 13 | V13L | Gta | Tta | 40 | 51 | B.1.1.222 | 0.00816 |
ORF3a | 13 | V13L | Gta | Cta | 11 | 51 | B.1.1.222 | 0.002244 |
ORF3a | 13 | V13L | Gta | Tta | 49 | 50 | B.1.160 | 0.001528 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 50 | B.1.160 | 0.000031 |
ORF3a | 13 | V13L | Gta | Tta | 50 | 50 | B.1.243 | 0.003479 |
ORF3a | 13 | V13L | Gta | Tta | 46 | 46 | B.1.251 | 1 |
ORF3a | 13 | V13L | Gta | Tta | 42 | 42 | B.1.525 | 0.004753 |
ORF3a | 13 | V13L | Gta | Tta | 40 | 40 | B.1.254 | 1 |
ORF3a | 13 | V13L | Gta | Tta | 40 | 40 | B.1.559 | 1 |
ORF3a | 13 | V13L | Gta | Tta | 38 | 38 | AY.5 | 0.000785 |
ORF3a | 13 | V13L | Gta | Cta | 18 | 35 | AY.29 | 0.000284 |
ORF3a | 13 | V13L | Gta | Tta | 17 | 35 | AY.29 | 0.000268 |
ORF3a | 13 | V13L | Gta | Tta | 34 | 34 | B.1.248 | 1 |
ORF3a | 13 | V13L | Gta | Tta | 30 | 33 | AY.33 | 0.002003 |
ORF3a | 13 | V13L | Gta | Cta | 3 | 33 | AY.33 | 0.0002 |
ORF3a | 13 | V13L | Gta | Tta | 33 | 33 | C.37 | 0.00383 |
ORF3a | 13 | V13L | Gta | Tta | 31 | 32 | B.1.1.28 | 0.009648 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 32 | B.1.1.28 | 0.000311 |
ORF3a | 13 | V13L | Gta | Tta | 30 | 31 | B.1.1.519 | 0.001191 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 31 | B.1.1.519 | 0.00004 |
ORF3a | 13 | V13L | Gta | Tta | 31 | 31 | B.1.177.32 | 0.041835 |
ORF3a | 13 | V13L | Gta | Tta | 28 | 28 | B.1.1.33 | 0.011785 |
ORF3a | 13 | V13L | Gta | Tta | 27 | 28 | B.1.351 | 0.000803 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 28 | B.1.351 | 0.00003 |
ORF3a | 13 | V13L | Gta | Tta | 27 | 27 | AY.41 | 0.007937 |
ORF3a | 13 | V13L | Gta | Tta | 26 | 26 | AY.30 | 0.010289 |
ORF3a | 13 | V13L | Gta | Tta | 24 | 25 | P.1.15 | 0.005576 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 25 | P.1.15 | 0.000232 |
ORF3a | 13 | V13L | Gta | Tta | 22 | 24 | AY.26 | 0.000623 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 24 | AY.26 | 0.000057 |
ORF3a | 13 | V13L | Gta | Tta | 23 | 23 | B.1.596.1 | 0.214953 |
ORF3a | 13 | V13L | Gta | Tta | 19 | 22 | B.1.429 | 0.000447 |
ORF3a | 13 | V13L | Gta | Cta | 3 | 22 | B.1.429 | 0.000071 |
ORF3a | 13 | V13L | Gta | Tta | 21 | 21 | B.1.36.1 | 0.023945 |
ORF3a | 13 | V13L | Gta | Tta | 20 | 20 | B.1.557 | 1 |
ORF3a | 13 | V13L | Gta | Tta | 20 | 20 | P.1.2 | 0.023121 |
ORF3a | 13 | V13L | Gta | Tta | 19 | 19 | B.1.1.219 | 0.095 |
ORF3a | 13 | V13L | Gta | Tta | 15 | 18 | AY.84 | 0.006562 |
ORF3a | 13 | V13L | Gta | Cta | 3 | 18 | AY.84 | 0.001312 |
ORF3a | 13 | V13L | Gta | Tta | 16 | 17 | B.1.526 | 0.000376 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 17 | B.1.526 | 0.000024 |
ORF3a | 13 | V13L | Gta | Tta | 14 | 16 | AY.9.2 | 0.000514 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 16 | AY.9.2 | 0.000073 |
ORF3a | 13 | V13L | Gta | Tta | 16 | 16 | B.1.249 | 1 |
ORF3a | 13 | V13L | Gta | Tta | 10 | 15 | AY.9.1 | 0.000837 |
ORF3a | 13 | V13L | Gta | Cta | 5 | 15 | AY.9.1 | 0.000419 |
ORF3a | 13 | V13L | Gta | Tta | 15 | 15 | B.1.1.27 | 0.084746 |
ORF3a | 13 | V13L | Gta | Tta | 14 | 14 | AY.7.1 | 0.001578 |
ORF3a | 13 | V13L | Gta | Tta | 11 | 13 | AY.9 | 0.000744 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 13 | AY.9 | 0.000135 |
ORF3a | 13 | V13L | Gta | Tta | 12 | 13 | AY.98.1 | 0.000581 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 13 | AY.98.1 | 0.000048 |
ORF3a | 13 | V13L | Gta | Tta | 13 | 13 | B.1.177.6 | 0.012695 |
ORF3a | 13 | V13L | Gta | Tta | 12 | 13 | B.1.36.29 | 0.006208 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 13 | B.1.36.29 | 0.000517 |
ORF3a | 13 | V13L | Gta | Tta | 12 | 12 | B | 0.001534 |
ORF3a | 13 | V13L | Gta | Tta | 10 | 11 | AY.100 | 0.00046 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 11 | AY.100 | 0.000046 |
ORF3a | 13 | V13L | Gta | Cta | 8 | 11 | AY.119 | 0.000282 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 11 | AY.119 | 0.000106 |
ORF3a | 13 | V13L | Gta | Cta | 8 | 11 | AY.39.1 | 0.000317 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 11 | AY.39.1 | 0.000119 |
ORF3a | 13 | V13L | Gta | Tta | 11 | 11 | B.1.1.422 | 0.5 |
ORF3a | 13 | V13L | Gta | Tta | 11 | 11 | B.1.179 | 0.041353 |
ORF3a | 13 | V13L | Gta | Tta | 8 | 10 | AY.42 | 0.000322 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 10 | AY.42 | 0.00008 |
ORF3a | 13 | V13L | Gta | Tta | 9 | 10 | AY.47 | 0.00028 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 10 | AY.47 | 0.000031 |
ORF3a | 13 | V13L | Gta | Tta | 9 | 10 | B.1.1.298 | 0.007759 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 10 | B.1.1.298 | 0.000862 |
ORF3a | 13 | V13L | Gta | Tta | 7 | 9 | AY.120 | 0.00026 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 9 | AY.120 | 0.000074 |
ORF3a | 13 | V13L | Gta | Tta | 9 | 9 | AY.20 | 0.00035 |
ORF3a | 13 | V13L | Gta | Tta | 7 | 9 | AY.5.3 | 0.002362 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 9 | AY.5.3 | 0.000675 |
ORF3a | 13 | V13L | Gta | Cta | 6 | 9 | B.1.234 | 0.000792 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 9 | B.1.234 | 0.000396 |
ORF3a | 13 | V13L | Gta | Tta | 8 | 8 | AY.65 | 0.004264 |
ORF3a | 13 | V13L | Gta | Tta | 8 | 8 | B.1.177.87 | 0.005822 |
ORF3a | 13 | V13L | Gta | Tta | 8 | 8 | P.2 | 0.001493 |
ORF3a | 13 | V13L | Gta | Tta | 7 | 7 | AY.34 | 0.000679 |
ORF3a | 13 | V13L | Gta | Tta | 7 | 7 | AY.92 | 0.002011 |
ORF3a | 13 | V13L | Gta | Tta | 7 | 7 | B.1.311 | 0.001922 |
ORF3a | 13 | V13L | Gta | Cta | 7 | 7 | B.1.561 | 0.002779 |
ORF3a | 13 | V13L | Gta | Tta | 7 | 7 | B.1.564 | 0.002981 |
ORF3a | 13 | V13L | Gta | Tta | 7 | 7 | B.1.627 | 0.014141 |
ORF3a | 13 | V13L | Gta | Tta | 7 | 7 | B.1.628 | 0.002467 |
ORF3a | 13 | V13L | Gta | Tta | 6 | 6 | AY.14 | 0.000528 |
ORF3a | 13 | V13L | Gta | Tta | 6 | 6 | AY.4.5 | 0.000645 |
ORF3a | 13 | V13L | Gta | Tta | 6 | 6 | AY.99.2 | 0.000553 |
ORF3a | 13 | V13L | Gta | Tta | 6 | 6 | B.1.258.17 | 0.000624 |
ORF3a | 13 | V13L | Gta | Tta | 6 | 6 | B.1.396 | 0.004234 |
ORF3a | 13 | V13L | Gta | Tta | 6 | 6 | B.1.411 | 0.022222 |
ORF3a | 13 | V13L | Gta | Tta | 6 | 6 | B.1.8 | 0.011834 |
ORF3a | 13 | V13L | Gta | Tta | 5 | 5 | AY.106 | 0.001674 |
ORF3a | 13 | V13L | Gta | Tta | 4 | 5 | AY.4.2 | 0.000087 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 5 | AY.4.2 | 0.000022 |
ORF3a | 13 | V13L | Gta | Cta | 4 | 5 | AY.46.6 | 0.000289 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 5 | AY.46.6 | 0.000072 |
ORF3a | 13 | V13L | Gta | Tta | 5 | 5 | AY.98 | 0.000395 |
ORF3a | 13 | V13L | Gta | Tta | 5 | 5 | B.1.221 | 0.000355 |
ORF3a | 13 | V13L | Gta | Tta | 5 | 5 | B.1.389 | 0.00501 |
ORF3a | 13 | V13L | Gta | Tta | 5 | 5 | B.1.466.2 | 0.001956 |
ORF3a | 13 | V13L | Gta | Tta | 5 | 5 | B.1.575 | 0.001517 |
ORF3a | 13 | V13L | Gta | Tta | 4 | 4 | AY.121 | 0.000541 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 4 | AY.36 | 0.000445 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 4 | AY.36 | 0.000148 |
ORF3a | 13 | V13L | Gta | Tta | 4 | 4 | AY.46 | 0.000416 |
ORF3a | 13 | V13L | Gta | Tta | 4 | 4 | B.1.1.216 | 0.003562 |
ORF3a | 13 | V13L | Gta | Tta | 4 | 4 | B.1.1.325 | 0.102564 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 4 | B.1.258 | 0.0002 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 4 | B.1.258 | 0.000067 |
ORF3a | 13 | V13L | Gta | Tta | 4 | 4 | B.1.596 | 0.000349 |
ORF3a | 13 | V13L | Gta | Tta | 4 | 4 | C.36 | 0.003643 |
ORF3a | 13 | V13L | Gta | Tta | 4 | 4 | P.1.1 | 0.001271 |
ORF3a | 13 | V13L | Gta | Tta | 4 | 4 | Q.3 | 0.00058 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | AY.116 | 0.00086 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 3 | AY.117 | 0.000169 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 3 | AY.117 | 0.000085 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | AY.35 | 0.000699 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | AY.38 | 0.001498 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 3 | AY.61 | 0.00021 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 3 | AY.61 | 0.000105 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 3 | AY.7 | 0.000392 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 3 | AY.7 | 0.000196 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | B.1.1.186 | 0.010309 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | B.1.1.231 | 0.009288 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 3 | B.1.1.306 | 0.000877 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 3 | B.1.1.306 | 0.000438 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | B.1.1.318 | 0.000905 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | B.1.1.369 | 0.001339 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | B.1.1.39 | 0.001529 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | B.1.336 | 0.007317 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | B.1.367 | 0.002377 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | B.1.399 | 0.005803 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 3 | B.1.621.1 | 0.001012 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 3 | B.1.621.1 | 0.000506 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | P.1.7 | 0.000958 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | P.5 | 0.041096 |
ORF3a | 13 | V13L | Gta | Tta | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | A.27 | 0.003311 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.1 | 0.000791 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.110 | 0.000225 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.111 | 0.000366 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.116.1 | 0.000623 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 2 | AY.45 | 0.000122 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 2 | AY.45 | 0.000122 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 2 | AY.46.5 | 0.000397 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 2 | AY.59 | 0.00053 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 2 | AY.59 | 0.00053 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.78 | 0.003082 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.1.317 | 0.000823 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.1.372 | 0.001377 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 2 | B.1.1.442 | 0.037037 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.1.46 | 0.008734 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.1.526 | 0.007092 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.1.63 | 0.000772 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.143 | 0.042553 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.160.16 | 0.001859 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.160.32 | 0.008584 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.167 | 0.015625 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 2 | B.1.177.73 | 0.000566 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 2 | B.1.177.73 | 0.000566 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.177.82 | 0.000955 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.232 | 0.001075 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.258.14 | 0.001961 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.36.38 | 0.003284 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.497 | 0.00063 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.544 | 0.012048 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.545 | 0.028986 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.567 | 0.006667 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.609 | 0.000959 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | B.1.617.1 | 0.000258 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | C.36.3 | 0.001134 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | P.1.12 | 0.000968 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | P.1.14 | 0.000096 |
ORF3a | 13 | V13L | Gta | Cta | 2 | 2 | P.7 | 0.008734 |
ORF3a | 13 | V13L | Gta | Tta | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | A.2 | 0.000662 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | A.23 | 0.010526 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | A.28 | 0.002646 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | A.3 | 0.002096 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.15 | 0.002222 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | AY.80 | 0.001129 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.83 | 0.001724 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.89 | 0.004902 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | AZ.2 | 0.000821 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.15 | 0.013514 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | B.1.1.174 | 0.003378 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.198 | 0.001468 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.201 | 0.02439 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.218 | 0.007692 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.305 | 0.003861 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.316 | 0.000925 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.363 | 0.005988 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.4 | 0.002976 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.517 | 0.006803 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.1.71 | 0.006061 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.115 | 0.021739 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.137 | 0.5 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.142 | 0.002899 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.189 | 0.004292 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.199 | 0.004132 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | B.1.3 | 0.002618 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.319 | 0.003049 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.343 | 0.020833 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.35 | 0.008475 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.36.28 | 0.005747 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.36.35 | 0.002604 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.371 | 0.001122 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.382 | 0.008929 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.415.1 | 0.007576 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.443 | 0.004673 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.492 | 0.007042 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.523 | 0.002451 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.533 | 0.009615 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | B.1.597 | 0.00463 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.636 | 0.006711 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.93 | 0.000934 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.1.94 | 0.027027 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | B.29 | 0.003509 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | D.2 | 0.000075 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | P.1.4 | 0.000977 |
ORF3a | 13 | V13L | Gta | Tta | 1 | 1 | R.1 | 0.00009 |
ORF3a | 13 | V13L | Gta | Cta | 1 | 1 | R.2 | 0.014493 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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