CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = V112V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a112V112VsyngtCgtT638561290.95990625726-25728
ORF3a112V112VsyngtCgtG63851430.022396225726-25728
ORF3a112V112VsyngtCgtA63851130.017697725726-25728

Details of the mutation V112V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a112V112VgtCgtT61296385All0.001172
ORF3a112V112VgtCgtG1436385All0.000027
ORF3a112V112VgtCgtA1136385All0.000022
ORF3a112V112VgtCgtT10851148B.1.1.70.000971
ORF3a112V112VgtCgtA511148B.1.1.70.000046
ORF3a112V112VgtCgtG121148B.1.1.70.000011
ORF3a112V112VgtCgtT466466AY.30.004635
ORF3a112V112VgtCgtT319337B.1.20.002809
ORF3a112V112VgtCgtG17337B.1.20.00015
ORF3a112V112VgtCgtA1337B.1.20.000009
ORF3a112V112VgtCgtT322330AY.40.000501
ORF3a112V112VgtCgtG8330AY.40.000012
ORF3a112V112VgtCgtT302302AY.3.10.025748
ORF3a112V112VgtCgtT287287B.1.1.280.089325
ORF3a112V112VgtCgtT284284AY.1200.010559
ORF3a112V112VgtCgtT228232B.1.617.20.000859
ORF3a112V112VgtCgtA2232B.1.617.20.000008
ORF3a112V112VgtCgtG2232B.1.617.20.000008
ORF3a112V112VgtCgtT215219AY.440.001309
ORF3a112V112VgtCgtA4219AY.440.000024
ORF3a112V112VgtCgtT178180B.1.1770.002344
ORF3a112V112VgtCgtG1180B.1.1770.000013
ORF3a112V112VgtCgtA1180B.1.1770.000013
ORF3a112V112VgtCgtT133135AY.430.000589
ORF3a112V112VgtCgtA1135AY.430.000004
ORF3a112V112VgtCgtG1135AY.430.000004
ORF3a112V112VgtCgtT129129B.1.1.2430.526531
ORF3a112V112VgtCgtT125128B.10.001145
ORF3a112V112VgtCgtA3128B.10.000027
ORF3a112V112VgtCgtT125127B.1.10.002268
ORF3a112V112VgtCgtG2127B.1.10.000036
ORF3a112V112VgtCgtT124124AY.1030.00077
ORF3a112V112VgtCgtT5586AY.250.000331
ORF3a112V112VgtCgtG1786AY.250.000102
ORF3a112V112VgtCgtA1486AY.250.000084
ORF3a112V112VgtCgtT6969AY.420.002776
ORF3a112V112VgtCgtT6264P.10.000977
ORF3a112V112VgtCgtG264P.10.000032
ORF3a112V112VgtCgtT4951B.1.360.007149
ORF3a112V112VgtCgtG251B.1.360.000292
ORF3a112V112VgtCgtT5050B.1.3690.014261
ORF3a112V112VgtCgtT4949AY.1130.006977
ORF3a112V112VgtCgtT4647B.1.6210.004072
ORF3a112V112VgtCgtG147B.1.6210.000089
ORF3a112V112VgtCgtT4545AY.260.001274
ORF3a112V112VgtCgtT3939AY.750.002185
ORF3a112V112VgtCgtT3939B.1.1.1590.182243
ORF3a112V112VgtCgtT3738AY.1190.001306
ORF3a112V112VgtCgtG138AY.1190.000035
ORF3a112V112VgtCgtT3737AA.31
ORF3a112V112VgtCgtT3737P.1.150.008597
ORF3a112V112VgtCgtG3336AY.140.002904
ORF3a112V112VgtCgtT336AY.140.000264
ORF3a112V112VgtCgtT3536B.1.6230.018777
ORF3a112V112VgtCgtA136B.1.6230.000536
ORF3a112V112VgtCgtT3333B.1.1.2800.101852
ORF3a112V112VgtCgtG3031AY.530.008626
ORF3a112V112VgtCgtT131AY.530.000288
ORF3a112V112VgtCgtT3131B.1.5960.002701
ORF3a112V112VgtCgtT2830AY.1020.000742
ORF3a112V112VgtCgtG130AY.1020.000027
ORF3a112V112VgtCgtA130AY.1020.000027
ORF3a112V112VgtCgtT2930AY.9.20.001065
ORF3a112V112VgtCgtG130AY.9.20.000037
ORF3a112V112VgtCgtT2626AY.4.20.000564
ORF3a112V112VgtCgtT2324AY.610.00241
ORF3a112V112VgtCgtA124AY.610.000105
ORF3a112V112VgtCgtT2424B.1.177.80.018059
ORF3a112V112VgtCgtT2424C.370.002786
ORF3a112V112VgtCgtT2323AY.290.000363
ORF3a112V112VgtCgtT2223AY.390.000544
ORF3a112V112VgtCgtG123AY.390.000025
ORF3a112V112VgtCgtT2222P.20.004106
ORF3a112V112VgtCgtT2020AY.200.000777
ORF3a112V112VgtCgtT2020B.1.1.2530.050125
ORF3a112V112VgtCgtT2020B.1.1.5190.000794
ORF3a112V112VgtCgtT1919B.1.177.530.045455
ORF3a112V112VgtCgtT1818B.1.2210.001279
ORF3a112V112VgtCgtT1617B.1.3510.000476
ORF3a112V112VgtCgtA117B.1.3510.00003
ORF3a112V112VgtCgtA1617B.1.4700.022472
ORF3a112V112VgtCgtT117B.1.4700.001404
ORF3a112V112VgtCgtT1617Q.80.002639
ORF3a112V112VgtCgtA117Q.80.000165
ORF3a112V112VgtCgtT1616AY.1110.00293
ORF3a112V112VgtCgtT1516B.1.2430.001044
ORF3a112V112VgtCgtG116B.1.2430.00007
ORF3a112V112VgtCgtT1515AY.99.20.001382
ORF3a112V112VgtCgtT1414AY.46.60.001011
ORF3a112V112VgtCgtT1314R.10.00117
ORF3a112V112VgtCgtG114R.10.00009
ORF3a112V112VgtCgtT1313AY.800.014673
ORF3a112V112VgtCgtT1313B.1.1.670.059361
ORF3a112V112VgtCgtT1212B.1.258.170.001248
ORF3a112V112VgtCgtT1212B.1.5260.000282
ORF3a112V112VgtCgtT1212B.1.6370.000877
ORF3a112V112VgtCgtT1212Q.40.005457
ORF3a112V112VgtCgtT1111AY.470.000342
ORF3a112V112VgtCgtT1111B.1.1600.000343
ORF3a112V112VgtCgtT610AY.1170.000507
ORF3a112V112VgtCgtA410AY.1170.000338
ORF3a112V112VgtCgtT1010AY.39.10.000396
ORF3a112V112VgtCgtT1010AY.4.50.001075
ORF3a112V112VgtCgtT1010B.1.2340.001319
ORF3a112V112VgtCgtT1010B.1.4290.000235
ORF3a112V112VgtCgtT1010P.1.120.00484
ORF3a112V112VgtCgtT99AU.20.021792
ORF3a112V112VgtCgtT99AY.1180.000564
ORF3a112V112VgtCgtT99AY.98.10.000436
ORF3a112V112VgtCgtT99B.1.177.810.001704
ORF3a112V112VgtCgtT99B.1.2580.000599
ORF3a112V112VgtCgtT88AY.1100.000902
ORF3a112V112VgtCgtT88B.1.1.2160.007124
ORF3a112V112VgtCgtT88B.1.2760.135593
ORF3a112V112VgtCgtT77AY.1000.000322
ORF3a112V112VgtCgtT77AY.1160.002007
ORF3a112V112VgtCgtT77AY.230.000488
ORF3a112V112VgtCgtT77AY.50.000145
ORF3a112V112VgtCgtT77AY.550.006422
ORF3a112V112VgtCgtT77AY.9.10.000586
ORF3a112V112VgtCgtT66AY.320.003195
ORF3a112V112VgtCgtT66AY.330.000401
ORF3a112V112VgtCgtT66AY.460.000624
ORF3a112V112VgtCgtT66AY.730.003992
ORF3a112V112VgtCgtT66AY.850.002563
ORF3a112V112VgtCgtT66B.1.177.440.003114
ORF3a112V112VgtCgtT66P.1.140.000287
ORF3a112V112VgtCgtT55AY.4.2.10.000745
ORF3a112V112VgtCgtT55AY.450.000608
ORF3a112V112VgtCgtT45AY.60.000165
ORF3a112V112VgtCgtA15AY.60.000041
ORF3a112V112VgtCgtT55AY.75.10.000902
ORF3a112V112VgtCgtT55B.1.1.3060.002192
ORF3a112V112VgtCgtT55B.1.1.3540.02193
ORF3a112V112VgtCgtT55B.1.1.3720.003444
ORF3a112V112VgtCgtT55B.1.930.004669
ORF3a112V112VgtCgtT45D.20.0003
ORF3a112V112VgtCgtA15D.20.000075
ORF3a112V112VgtCgtT240.111111
ORF3a112V112VgtCgtA240.111111
ORF3a112V112VgtCgtG34A.2.50.001497
ORF3a112V112VgtCgtT14A.2.50.000499
ORF3a112V112VgtCgtT44AY.270.000259
ORF3a112V112VgtCgtT44AY.300.001583
ORF3a112V112VgtCgtT44AY.370.001264
ORF3a112V112VgtCgtT34B0.000383
ORF3a112V112VgtCgtA14B0.000128
ORF3a112V112VgtCgtT44B.1.1.1160.25
ORF3a112V112VgtCgtT44B.1.1.1580.04878
ORF3a112V112VgtCgtT34B.1.1.2140.000166
ORF3a112V112VgtCgtA14B.1.1.2140.000055
ORF3a112V112VgtCgtT44B.1.1.250.002274
ORF3a112V112VgtCgtT44B.1.177.460.003673
ORF3a112V112VgtCgtT44B.1.4270.000202
ORF3a112V112VgtCgtT44B.1.5750.001214
ORF3a112V112VgtCgtT44B.1.617.10.000516
ORF3a112V112VgtCgtT44B.1.6250.009412
ORF3a112V112VgtCgtT44Z.10.011561
ORF3a112V112VgtCgtT33AY.120.20.003856
ORF3a112V112VgtCgtT33AY.1210.000406
ORF3a112V112VgtCgtT33AY.240.001293
ORF3a112V112VgtCgtT33AY.360.000445
ORF3a112V112VgtCgtT33AY.46.40.000494
ORF3a112V112VgtCgtT33AY.620.001307
ORF3a112V112VgtCgtT33AY.640.001786
ORF3a112V112VgtCgtT23AY.70.000392
ORF3a112V112VgtCgtA13AY.70.000196
ORF3a112V112VgtCgtT33AY.940.001328
ORF3a112V112VgtCgtT33AY.980.000237
ORF3a112V112VgtCgtT33AY.99.10.004658
ORF3a112V112VgtCgtT33B.1.1.1280.021277
ORF3a112V112VgtCgtT33B.1.1.1530.003286
ORF3a112V112VgtCgtT33B.1.1.3110.001074
ORF3a112V112VgtCgtT33B.1.1.3160.002775
ORF3a112V112VgtCgtT33B.1.1.3260.005282
ORF3a112V112VgtCgtT33B.1.1.330.001263
ORF3a112V112VgtCgtT33B.1.1.630.001157
ORF3a112V112VgtCgtT33B.1.177.600.000655
ORF3a112V112VgtCgtG33B.1.1890.012876
ORF3a112V112VgtCgtT33B.1.221.20.012048
ORF3a112V112VgtCgtT33B.1.243.10.066667
ORF3a112V112VgtCgtT33B.1.3110.000824
ORF3a112V112VgtCgtT33B.1.36.170.001482
ORF3a112V112VgtCgtT33B.1.36.290.001552
ORF3a112V112VgtCgtT33B.1.416.10.004687
ORF3a112V112VgtCgtT33B.1.4740.005703
ORF3a112V112VgtCgtT33B.1.5250.000339
ORF3a112V112VgtCgtT33B.1.5950.000783
ORF3a112V112VgtCgtT33B.1.780.025641
ORF3a112V112VgtCgtT33Q.10.000379
ORF3a112V112VgtCgtT22AY.1070.000932
ORF3a112V112VgtCgtT22AY.1080.002205
ORF3a112V112VgtCgtG12AY.120.10.000321
ORF3a112V112VgtCgtT12AY.120.10.000321
ORF3a112V112VgtCgtT22AY.5.30.000675
ORF3a112V112VgtCgtT22AY.690.000373
ORF3a112V112VgtCgtT22AY.700.000417
ORF3a112V112VgtCgtT22AY.810.003984
ORF3a112V112VgtCgtT22AY.910.001461
ORF3a112V112VgtCgtT22AY.930.000546
ORF3a112V112VgtCgtT22B.1.1.1740.006757
ORF3a112V112VgtCgtT22B.1.1.1890.003026
ORF3a112V112VgtCgtT22B.1.1.2170.007273
ORF3a112V112VgtCgtT22B.1.1.2310.006192
ORF3a112V112VgtCgtT22B.1.1.2690.002706
ORF3a112V112VgtCgtT22B.1.1.2790.002242
ORF3a112V112VgtCgtT22B.1.1.3170.000823
ORF3a112V112VgtCgtT22B.1.1.3480.001592
ORF3a112V112VgtCgtT22B.1.1.460.008734
ORF3a112V112VgtCgtT22B.1.1110.00235
ORF3a112V112VgtCgtT22B.1.140.035088
ORF3a112V112VgtCgtT22B.1.177.430.002954
ORF3a112V112VgtCgtT22B.1.177.60.001953
ORF3a112V112VgtCgtT22B.1.258.140.001961
ORF3a112V112VgtCgtT22B.1.3460.002621
ORF3a112V112VgtCgtT22B.1.36.180.00084
ORF3a112V112VgtCgtG22B.1.3750.001639
ORF3a112V112VgtCgtT22B.1.3960.001411
ORF3a112V112VgtCgtT22B.1.5610.000794
ORF3a112V112VgtCgtT22B.1.5820.000981
ORF3a112V112VgtCgtT22B.1.6200.001892
ORF3a112V112VgtCgtT22B.230.005848
ORF3a112V112VgtCgtT22P.1.130.001797
ORF3a112V112VgtCgtT22P.60.006289
ORF3a112V112VgtCgtT22W.40.002703
ORF3a112V112VgtCgtT11A.20.000662
ORF3a112V112VgtCgtT11A.210.00277
ORF3a112V112VgtCgtT11AH.30.003802
ORF3a112V112VgtCgtT11AU.30.00211
ORF3a112V112VgtCgtT11AY.10.000396
ORF3a112V112VgtCgtT11AY.1040.001984
ORF3a112V112VgtCgtT11AY.1050.000643
ORF3a112V112VgtCgtT11AY.1060.000335
ORF3a112V112VgtCgtT11AY.110.001339
ORF3a112V112VgtCgtT11AY.120.000316
ORF3a112V112VgtCgtT11AY.160.00038
ORF3a112V112VgtCgtT11AY.16.10.00047
ORF3a112V112VgtCgtT11AY.23.10.000417
ORF3a112V112VgtCgtT11AY.29.10.000221
ORF3a112V112VgtCgtT11AY.340.000097
ORF3a112V112VgtCgtT11AY.350.000233
ORF3a112V112VgtCgtT11AY.4.30.000842
ORF3a112V112VgtCgtT11AY.400.000964
ORF3a112V112VgtCgtT11AY.46.20.000635
ORF3a112V112VgtCgtT11AY.46.50.000198
ORF3a112V112VgtCgtT11AY.480.000465
ORF3a112V112VgtCgtT11AY.5.40.000277
ORF3a112V112VgtCgtA11AY.520.000814
ORF3a112V112VgtCgtT11AY.540.000095
ORF3a112V112VgtCgtT11AY.720.001361
ORF3a112V112VgtCgtT11AY.740.000116
ORF3a112V112VgtCgtT11AY.830.001724
ORF3a112V112VgtCgtT11AY.840.000437
ORF3a112V112VgtCgtT11AY.90.000068
ORF3a112V112VgtCgtT11AY.920.000287
ORF3a112V112VgtCgtT11AY.950.000761
ORF3a112V112VgtCgtT11B.1.1.1290.009174
ORF3a112V112VgtCgtT11B.1.1.1520.04
ORF3a112V112VgtCgtT11B.1.1.160.055556
ORF3a112V112VgtCgtT11B.1.1.1920.002309
ORF3a112V112VgtCgtT11B.1.1.2290.005747
ORF3a112V112VgtCgtT11B.1.1.2360.006897
ORF3a112V112VgtCgtT11B.1.1.2840.000107
ORF3a112V112VgtCgtT11B.1.1.2940.001266
ORF3a112V112VgtCgtT11B.1.1.3090.005848
ORF3a112V112VgtCgtA11B.1.1.3310.011628
ORF3a112V112VgtCgtT11B.1.1.3690.000446
ORF3a112V112VgtCgtT11B.1.1.370.000193
ORF3a112V112VgtCgtT11B.1.1.3740.002375
ORF3a112V112VgtCgtT11B.1.1.390.00051
ORF3a112V112VgtCgtT11B.1.1.4060.006494
ORF3a112V112VgtCgtT11B.1.1.4130.006897
ORF3a112V112VgtCgtT11B.1.1.4160.000905
ORF3a112V112VgtCgtT11B.1.1.4200.001006
ORF3a112V112VgtCgtT11B.1.1.4290.004608
ORF3a112V112VgtCgtT11B.1.1.4320.001266
ORF3a112V112VgtCgtT11B.1.1.4530.008475
ORF3a112V112VgtCgtT11B.1.1.4660.008696
ORF3a112V112VgtCgtT11B.1.1.5180.006329
ORF3a112V112VgtCgtT11B.1.1.700.000341
ORF3a112V112VgtCgtT11B.1.1470.000756
ORF3a112V112VgtCgtT11B.1.160.280.002924
ORF3a112V112VgtCgtT11B.1.160.320.004292
ORF3a112V112VgtCgtT11B.1.160.90.007194
ORF3a112V112VgtCgtT11B.1.1630.02439
ORF3a112V112VgtCgtT11B.1.1690.014925
ORF3a112V112VgtCgtT11B.1.177.150.000631
ORF3a112V112VgtCgtT11B.1.177.210.000076
ORF3a112V112VgtCgtT11B.1.177.420.000894
ORF3a112V112VgtCgtT11B.1.177.50.001242
ORF3a112V112VgtCgtT11B.1.177.570.000281
ORF3a112V112VgtCgtT11B.1.177.580.001332
ORF3a112V112VgtCgtT11B.1.177.630.002703
ORF3a112V112VgtCgtT11B.1.177.70.000165
ORF3a112V112VgtCgtT11B.1.177.860.000183
ORF3a112V112VgtCgtT11B.1.2060.000816
ORF3a112V112VgtCgtT11B.1.214.20.0006
ORF3a112V112VgtCgtT11B.1.2320.000537
ORF3a112V112VgtCgtA11B.1.258.210.007752
ORF3a112V112VgtCgtT11B.1.258.70.001912
ORF3a112V112VgtCgtA11B.1.3010.005917
ORF3a112V112VgtCgtT11B.1.3200.001245
ORF3a112V112VgtCgtT11B.1.3410.022727
ORF3a112V112VgtCgtT11B.1.351.20.000303
ORF3a112V112VgtCgtT11B.1.351.30.000876
ORF3a112V112VgtCgtT11B.1.36.250.002208
ORF3a112V112VgtCgtT11B.1.36.270.000763
ORF3a112V112VgtCgtT11B.1.36.310.001751
ORF3a112V112VgtCgtT11B.1.36.360.000602
ORF3a112V112VgtCgtT11B.1.3660.004878
ORF3a112V112VgtCgtT11B.1.4000.000429
ORF3a112V112VgtCgtT11B.1.4030.003268
ORF3a112V112VgtCgtT11B.1.4220.000812
ORF3a112V112VgtCgtT11B.1.4320.011236
ORF3a112V112VgtCgtT11B.1.440.008333
ORF3a112V112VgtCgtT11B.1.4410.009615
ORF3a112V112VgtCgtT11B.1.466.20.000391
ORF3a112V112VgtCgtT11B.1.4980.020408
ORF3a112V112VgtCgtT11B.1.5240.001406
ORF3a112V112VgtCgtT11B.1.5380.008065
ORF3a112V112VgtCgtT11B.1.5500.013699
ORF3a112V112VgtCgtT11B.1.5510.00129
ORF3a112V112VgtCgtT11B.1.5640.000426
ORF3a112V112VgtCgtT11B.1.564.10.001577
ORF3a112V112VgtCgtT11B.1.5680.001111
ORF3a112V112VgtCgtT11B.1.5740.002151
ORF3a112V112VgtCgtT11B.1.5770.000687
ORF3a112V112VgtCgtT11B.1.6040.017241
ORF3a112V112VgtCgtT11B.1.621.10.000506
ORF3a112V112VgtCgtT11B.1.6280.000352
ORF3a112V112VgtCgtT11B.1.6330.041667
ORF3a112V112VgtCgtT11B.30.000831
ORF3a112V112VgtCgtT11B.400.000364
ORF3a112V112VgtCgtT11P.1.10.000318
ORF3a112V112VgtCgtT11P.1.160.000374
ORF3a112V112VgtCgtT11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.