CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 112 | V112V | syn | gtC | gtT | 6385 | 6129 | 0.959906 | 25726-25728 | |
ORF3a | 112 | V112V | syn | gtC | gtG | 6385 | 143 | 0.0223962 | 25726-25728 | |
ORF3a | 112 | V112V | syn | gtC | gtA | 6385 | 113 | 0.0176977 | 25726-25728 |
Details of the mutation V112V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 112 | V112V | gtC | gtT | 6129 | 6385 | All | 0.001172 |
ORF3a | 112 | V112V | gtC | gtG | 143 | 6385 | All | 0.000027 |
ORF3a | 112 | V112V | gtC | gtA | 113 | 6385 | All | 0.000022 |
ORF3a | 112 | V112V | gtC | gtT | 1085 | 1148 | B.1.1.7 | 0.000971 |
ORF3a | 112 | V112V | gtC | gtA | 51 | 1148 | B.1.1.7 | 0.000046 |
ORF3a | 112 | V112V | gtC | gtG | 12 | 1148 | B.1.1.7 | 0.000011 |
ORF3a | 112 | V112V | gtC | gtT | 466 | 466 | AY.3 | 0.004635 |
ORF3a | 112 | V112V | gtC | gtT | 319 | 337 | B.1.2 | 0.002809 |
ORF3a | 112 | V112V | gtC | gtG | 17 | 337 | B.1.2 | 0.00015 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 337 | B.1.2 | 0.000009 |
ORF3a | 112 | V112V | gtC | gtT | 322 | 330 | AY.4 | 0.000501 |
ORF3a | 112 | V112V | gtC | gtG | 8 | 330 | AY.4 | 0.000012 |
ORF3a | 112 | V112V | gtC | gtT | 302 | 302 | AY.3.1 | 0.025748 |
ORF3a | 112 | V112V | gtC | gtT | 287 | 287 | B.1.1.28 | 0.089325 |
ORF3a | 112 | V112V | gtC | gtT | 284 | 284 | AY.120 | 0.010559 |
ORF3a | 112 | V112V | gtC | gtT | 228 | 232 | B.1.617.2 | 0.000859 |
ORF3a | 112 | V112V | gtC | gtA | 2 | 232 | B.1.617.2 | 0.000008 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 232 | B.1.617.2 | 0.000008 |
ORF3a | 112 | V112V | gtC | gtT | 215 | 219 | AY.44 | 0.001309 |
ORF3a | 112 | V112V | gtC | gtA | 4 | 219 | AY.44 | 0.000024 |
ORF3a | 112 | V112V | gtC | gtT | 178 | 180 | B.1.177 | 0.002344 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 180 | B.1.177 | 0.000013 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 180 | B.1.177 | 0.000013 |
ORF3a | 112 | V112V | gtC | gtT | 133 | 135 | AY.43 | 0.000589 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 135 | AY.43 | 0.000004 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 135 | AY.43 | 0.000004 |
ORF3a | 112 | V112V | gtC | gtT | 129 | 129 | B.1.1.243 | 0.526531 |
ORF3a | 112 | V112V | gtC | gtT | 125 | 128 | B.1 | 0.001145 |
ORF3a | 112 | V112V | gtC | gtA | 3 | 128 | B.1 | 0.000027 |
ORF3a | 112 | V112V | gtC | gtT | 125 | 127 | B.1.1 | 0.002268 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 127 | B.1.1 | 0.000036 |
ORF3a | 112 | V112V | gtC | gtT | 124 | 124 | AY.103 | 0.00077 |
ORF3a | 112 | V112V | gtC | gtT | 55 | 86 | AY.25 | 0.000331 |
ORF3a | 112 | V112V | gtC | gtG | 17 | 86 | AY.25 | 0.000102 |
ORF3a | 112 | V112V | gtC | gtA | 14 | 86 | AY.25 | 0.000084 |
ORF3a | 112 | V112V | gtC | gtT | 69 | 69 | AY.42 | 0.002776 |
ORF3a | 112 | V112V | gtC | gtT | 62 | 64 | P.1 | 0.000977 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 64 | P.1 | 0.000032 |
ORF3a | 112 | V112V | gtC | gtT | 49 | 51 | B.1.36 | 0.007149 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 51 | B.1.36 | 0.000292 |
ORF3a | 112 | V112V | gtC | gtT | 50 | 50 | B.1.369 | 0.014261 |
ORF3a | 112 | V112V | gtC | gtT | 49 | 49 | AY.113 | 0.006977 |
ORF3a | 112 | V112V | gtC | gtT | 46 | 47 | B.1.621 | 0.004072 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 47 | B.1.621 | 0.000089 |
ORF3a | 112 | V112V | gtC | gtT | 45 | 45 | AY.26 | 0.001274 |
ORF3a | 112 | V112V | gtC | gtT | 39 | 39 | AY.75 | 0.002185 |
ORF3a | 112 | V112V | gtC | gtT | 39 | 39 | B.1.1.159 | 0.182243 |
ORF3a | 112 | V112V | gtC | gtT | 37 | 38 | AY.119 | 0.001306 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 38 | AY.119 | 0.000035 |
ORF3a | 112 | V112V | gtC | gtT | 37 | 37 | AA.3 | 1 |
ORF3a | 112 | V112V | gtC | gtT | 37 | 37 | P.1.15 | 0.008597 |
ORF3a | 112 | V112V | gtC | gtG | 33 | 36 | AY.14 | 0.002904 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 36 | AY.14 | 0.000264 |
ORF3a | 112 | V112V | gtC | gtT | 35 | 36 | B.1.623 | 0.018777 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 36 | B.1.623 | 0.000536 |
ORF3a | 112 | V112V | gtC | gtT | 33 | 33 | B.1.1.280 | 0.101852 |
ORF3a | 112 | V112V | gtC | gtG | 30 | 31 | AY.53 | 0.008626 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 31 | AY.53 | 0.000288 |
ORF3a | 112 | V112V | gtC | gtT | 31 | 31 | B.1.596 | 0.002701 |
ORF3a | 112 | V112V | gtC | gtT | 28 | 30 | AY.102 | 0.000742 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 30 | AY.102 | 0.000027 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 30 | AY.102 | 0.000027 |
ORF3a | 112 | V112V | gtC | gtT | 29 | 30 | AY.9.2 | 0.001065 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 30 | AY.9.2 | 0.000037 |
ORF3a | 112 | V112V | gtC | gtT | 26 | 26 | AY.4.2 | 0.000564 |
ORF3a | 112 | V112V | gtC | gtT | 23 | 24 | AY.61 | 0.00241 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 24 | AY.61 | 0.000105 |
ORF3a | 112 | V112V | gtC | gtT | 24 | 24 | B.1.177.8 | 0.018059 |
ORF3a | 112 | V112V | gtC | gtT | 24 | 24 | C.37 | 0.002786 |
ORF3a | 112 | V112V | gtC | gtT | 23 | 23 | AY.29 | 0.000363 |
ORF3a | 112 | V112V | gtC | gtT | 22 | 23 | AY.39 | 0.000544 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 23 | AY.39 | 0.000025 |
ORF3a | 112 | V112V | gtC | gtT | 22 | 22 | P.2 | 0.004106 |
ORF3a | 112 | V112V | gtC | gtT | 20 | 20 | AY.20 | 0.000777 |
ORF3a | 112 | V112V | gtC | gtT | 20 | 20 | B.1.1.253 | 0.050125 |
ORF3a | 112 | V112V | gtC | gtT | 20 | 20 | B.1.1.519 | 0.000794 |
ORF3a | 112 | V112V | gtC | gtT | 19 | 19 | B.1.177.53 | 0.045455 |
ORF3a | 112 | V112V | gtC | gtT | 18 | 18 | B.1.221 | 0.001279 |
ORF3a | 112 | V112V | gtC | gtT | 16 | 17 | B.1.351 | 0.000476 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 17 | B.1.351 | 0.00003 |
ORF3a | 112 | V112V | gtC | gtA | 16 | 17 | B.1.470 | 0.022472 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 17 | B.1.470 | 0.001404 |
ORF3a | 112 | V112V | gtC | gtT | 16 | 17 | Q.8 | 0.002639 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 17 | Q.8 | 0.000165 |
ORF3a | 112 | V112V | gtC | gtT | 16 | 16 | AY.111 | 0.00293 |
ORF3a | 112 | V112V | gtC | gtT | 15 | 16 | B.1.243 | 0.001044 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 16 | B.1.243 | 0.00007 |
ORF3a | 112 | V112V | gtC | gtT | 15 | 15 | AY.99.2 | 0.001382 |
ORF3a | 112 | V112V | gtC | gtT | 14 | 14 | AY.46.6 | 0.001011 |
ORF3a | 112 | V112V | gtC | gtT | 13 | 14 | R.1 | 0.00117 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 14 | R.1 | 0.00009 |
ORF3a | 112 | V112V | gtC | gtT | 13 | 13 | AY.80 | 0.014673 |
ORF3a | 112 | V112V | gtC | gtT | 13 | 13 | B.1.1.67 | 0.059361 |
ORF3a | 112 | V112V | gtC | gtT | 12 | 12 | B.1.258.17 | 0.001248 |
ORF3a | 112 | V112V | gtC | gtT | 12 | 12 | B.1.526 | 0.000282 |
ORF3a | 112 | V112V | gtC | gtT | 12 | 12 | B.1.637 | 0.000877 |
ORF3a | 112 | V112V | gtC | gtT | 12 | 12 | Q.4 | 0.005457 |
ORF3a | 112 | V112V | gtC | gtT | 11 | 11 | AY.47 | 0.000342 |
ORF3a | 112 | V112V | gtC | gtT | 11 | 11 | B.1.160 | 0.000343 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 10 | AY.117 | 0.000507 |
ORF3a | 112 | V112V | gtC | gtA | 4 | 10 | AY.117 | 0.000338 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | AY.39.1 | 0.000396 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | AY.4.5 | 0.001075 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | B.1.234 | 0.001319 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | B.1.429 | 0.000235 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | P.1.12 | 0.00484 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | AU.2 | 0.021792 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | AY.118 | 0.000564 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | AY.98.1 | 0.000436 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | B.1.177.81 | 0.001704 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | B.1.258 | 0.000599 |
ORF3a | 112 | V112V | gtC | gtT | 8 | 8 | AY.110 | 0.000902 |
ORF3a | 112 | V112V | gtC | gtT | 8 | 8 | B.1.1.216 | 0.007124 |
ORF3a | 112 | V112V | gtC | gtT | 8 | 8 | B.1.276 | 0.135593 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.100 | 0.000322 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.116 | 0.002007 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.23 | 0.000488 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.5 | 0.000145 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.55 | 0.006422 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.9.1 | 0.000586 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.32 | 0.003195 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.33 | 0.000401 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.46 | 0.000624 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.73 | 0.003992 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.85 | 0.002563 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | B.1.177.44 | 0.003114 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | P.1.14 | 0.000287 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | AY.4.2.1 | 0.000745 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 5 | AY.6 | 0.000165 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 5 | AY.6 | 0.000041 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | AY.75.1 | 0.000902 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | B.1.1.306 | 0.002192 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | B.1.1.354 | 0.02193 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | B.1.1.372 | 0.003444 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | B.1.93 | 0.004669 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 5 | D.2 | 0.0003 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 5 | D.2 | 0.000075 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112V | gtC | gtA | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112V | gtC | gtG | 3 | 4 | A.2.5 | 0.001497 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 4 | A.2.5 | 0.000499 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | AY.27 | 0.000259 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | AY.30 | 0.001583 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | AY.37 | 0.001264 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 4 | B | 0.000383 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 4 | B | 0.000128 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.1.116 | 0.25 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.1.158 | 0.04878 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 4 | B.1.1.214 | 0.000166 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 4 | B.1.1.214 | 0.000055 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.177.46 | 0.003673 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.427 | 0.000202 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.575 | 0.001214 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.625 | 0.009412 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | Z.1 | 0.011561 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.120.2 | 0.003856 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.24 | 0.001293 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.36 | 0.000445 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.46.4 | 0.000494 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.62 | 0.001307 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.64 | 0.001786 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 3 | AY.7 | 0.000392 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 3 | AY.7 | 0.000196 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.94 | 0.001328 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.98 | 0.000237 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.99.1 | 0.004658 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.128 | 0.021277 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.153 | 0.003286 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.316 | 0.002775 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.326 | 0.005282 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF3a | 112 | V112V | gtC | gtG | 3 | 3 | B.1.189 | 0.012876 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.221.2 | 0.012048 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.243.1 | 0.066667 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.36.17 | 0.001482 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.416.1 | 0.004687 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.474 | 0.005703 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.525 | 0.000339 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.595 | 0.000783 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.78 | 0.025641 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.107 | 0.000932 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 2 | AY.120.1 | 0.000321 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 2 | AY.120.1 | 0.000321 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.93 | 0.000546 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.174 | 0.006757 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.217 | 0.007273 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.46 | 0.008734 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.111 | 0.00235 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.14 | 0.035088 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.177.43 | 0.002954 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.177.6 | 0.001953 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.346 | 0.002621 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 2 | B.1.375 | 0.001639 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.396 | 0.001411 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.561 | 0.000794 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.582 | 0.000981 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.23 | 0.005848 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | P.1.13 | 0.001797 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | P.6 | 0.006289 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | W.4 | 0.002703 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | A.2 | 0.000662 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | A.21 | 0.00277 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AU.3 | 0.00211 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.83 | 0.001724 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.129 | 0.009174 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.152 | 0.04 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.16 | 0.055556 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 1 | B.1.1.331 | 0.011628 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.406 | 0.006494 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.453 | 0.008475 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.466 | 0.008696 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.160.32 | 0.004292 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.163 | 0.02439 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.169 | 0.014925 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 1 | B.1.258.21 | 0.007752 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 1 | B.1.301 | 0.005917 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.341 | 0.022727 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.36.25 | 0.002208 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.366 | 0.004878 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.403 | 0.003268 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.432 | 0.011236 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.44 | 0.008333 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.441 | 0.009615 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.498 | 0.020408 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.550 | 0.013699 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.574 | 0.002151 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.604 | 0.017241 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.633 | 0.041667 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.3 | 0.000831 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.40 | 0.000364 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | P.1.2 | 0.001156 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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