CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = T89I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a89T89InonsynaCaaTa832183130.99903925657-25659
ORF3a89T89InonsynaCAaTT832150.00060088925657-25659
ORF3a89T89InonsynaCAaTC832130.00036053425657-25659

Details of the mutation T89I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a89T89IaCaaTa83138321All0.00159
ORF3a89T89IaCAaTT58321All0.000001
ORF3a89T89IaCAaTC38321All0.000001
ORF3a89T89IaCaaTa22042204B.1.1.70.001973
ORF3a89T89IaCaaTa933933AY.40.001452
ORF3a89T89IaCaaTa501501B.1.617.20.001886
ORF3a89T89IaCaaTa440444AY.250.002647
ORF3a89T89IaCAaTT4444AY.250.000024
ORF3a89T89IaCaaTa238239AY.430.001054
ORF3a89T89IaCAaTC1239AY.430.000004
ORF3a89T89IaCaaTa234235B.1.5250.02648
ORF3a89T89IaCAaTC1235B.1.5250.000113
ORF3a89T89IaCaaTa192192B.1.20.001691
ORF3a89T89IaCaaTa172172B.1.4290.004047
ORF3a89T89IaCaaTa139139B.1.1770.00183
ORF3a89T89IaCaaTa124124AY.540.011823
ORF3a89T89IaCaaTa122122B.1.4511
ORF3a89T89IaCaaTa120120B.10.001099
ORF3a89T89IaCaaTa111111P.10.001749
ORF3a89T89IaCaaTa108108AY.440.000657
ORF3a89T89IaCaaTa103103AY.570.067585
ORF3a89T89IaCaaTa9797AY.1030.000602
ORF3a89T89IaCaaTa9393AY.130.014971
ORF3a89T89IaCaaTa8787AY.230.006068
ORF3a89T89IaCaaTa8585B.1.1.3170.034994
ORF3a89T89IaCaaTa8282B.1.10.001488
ORF3a89T89IaCaaTa7171B.1.5240.099859
ORF3a89T89IaCaaTa6868B.1.2320.036539
ORF3a89T89IaCaaTa6767AY.1060.022438
ORF3a89T89IaCaaTa5454AY.260.001529
ORF3a89T89IaCaaTa5454B.1.1.5190.002144
ORF3a89T89IaCaaTa5252Q.30.007542
ORF3a89T89IaCaaTa4848AY.1020.001273
ORF3a89T89IaCaaTa4545AY.200.001749
ORF3a89T89IaCaaTa4444B.1.5260.001034
ORF3a89T89IaCaaTa4343B.1.2580.002862
ORF3a89T89IaCaaTa4242AY.390.001038
ORF3a89T89IaCaaTa4041AY.30.000398
ORF3a89T89IaCAaTT141AY.30.00001
ORF3a89T89IaCaaTa4141B.1.6210.003629
ORF3a89T89IaCaaTa4040B.1.1.3680.123457
ORF3a89T89IaCaaTa3939AY.290.000615
ORF3a89T89IaCaaTa3939AY.480.01814
ORF3a89T89IaCaaTa3737B.1.3510.0011
ORF3a89T89IaCaaTa3636AY.1080.039691
ORF3a89T89IaCaaTa3333AY.60.001357
ORF3a89T89IaCaaTa3131AY.980.002449
ORF3a89T89IaCaaTa3131R.10.00279
ORF3a89T89IaCaaTa2727B.1.1.2840.0029
ORF3a89T89IaCaaTa2525AY.4.20.000542
ORF3a89T89IaCaaTa2424AY.450.00292
ORF3a89T89IaCaaTa2424B.1.1.2140.001331
ORF3a89T89IaCaaTa2424B.1.6200.022706
ORF3a89T89IaCaaTa2222B.1.1390.016129
ORF3a89T89IaCaaTa2121AY.750.001176
ORF3a89T89IaCaaTa2121Q.70.023333
ORF3a89T89IaCaaTa2020AY.1190.000706
ORF3a89T89IaCaaTa2020AY.50.000413
ORF3a89T89IaCaaTa2020Q.80.003298
ORF3a89T89IaCaaTa1718AY.1200.000632
ORF3a89T89IaCAaTC118AY.1200.000037
ORF3a89T89IaCaaTa1818C.370.002089
ORF3a89T89IaCaaTa1616AW.10.04878
ORF3a89T89IaCaaTa1515AY.1170.001268
ORF3a89T89IaCaaTa1515AY.270.000971
ORF3a89T89IaCaaTa1515B.1.1.3060.006576
ORF3a89T89IaCaaTa1515P.1.140.000717
ORF3a89T89IaCaaTa1414AY.470.000435
ORF3a89T89IaCaaTa1414B.1.5960.00122
ORF3a89T89IaCaaTa1313AY.330.000868
ORF3a89T89IaCaaTa1212AY.1000.000552
ORF3a89T89IaCaaTa1212AY.610.001257
ORF3a89T89IaCaaTa1212B.1.6230.006438
ORF3a89T89IaCaaTa1111AY.39.10.000436
ORF3a89T89IaCaaTa1111AY.580.009982
ORF3a89T89IaCaaTa1111B.1.177.80.008277
ORF3a89T89IaCaaTa1111B.1.2430.000765
ORF3a89T89IaCaaTa1111B.1.4090.008594
ORF3a89T89IaCaaTa1111P.1.150.002556
ORF3a89T89IaCaaTa1010AY.240.00431
ORF3a89T89IaCaaTa1010AY.3.10.000853
ORF3a89T89IaCaaTa1010B.1.1.3480.007962
ORF3a89T89IaCaaTa1010B.1.3960.007057
ORF3a89T89IaCaaTa1010B.1.4970.003148
ORF3a89T89IaCaaTa1010B.1.5410.044248
ORF3a89T89IaCaaTa99AY.4.50.000967
ORF3a89T89IaCaaTa99AY.950.006849
ORF3a89T89IaCaaTa99B.1.1600.000281
ORF3a89T89IaCaaTa99B.1.4270.000454
ORF3a89T89IaCaaTa88AY.46.60.000578
ORF3a89T89IaCaaTa88B.1.1.250.004548
ORF3a89T89IaCaaTa88B.1.160.270.121212
ORF3a89T89IaCaaTa88B.1.177.210.000612
ORF3a89T89IaCaaTa88B.1.177.580.010652
ORF3a89T89IaCaaTa88B.1.177.70.001319
ORF3a89T89IaCaaTa88B.1.2400.001725
ORF3a89T89IaCaaTa88B.1.3690.002282
ORF3a89T89IaCaaTa88B.1.466.20.00313
ORF3a89T89IaCaaTa77AY.420.000282
ORF3a89T89IaCaaTa77B.1.2210.000497
ORF3a89T89IaCaaTa77B.1.3110.001922
ORF3a89T89IaCaaTa77B.1.617.10.000903
ORF3a89T89IaCaaTa77B.30.005814
ORF3a89T89IaCaaTa77P.1.90.033654
ORF3a89T89IaCaaTa66AY.1160.001721
ORF3a89T89IaCaaTa66AY.120.10.001926
ORF3a89T89IaCaaTa66AY.350.001398
ORF3a89T89IaCaaTa66AY.46.40.000987
ORF3a89T89IaCaaTa66AY.99.20.000553
ORF3a89T89IaCaaTa66B.1.1.10.00196
ORF3a89T89IaCaaTa66B.1.1.510.010309
ORF3a89T89IaCaaTa66P.20.00112
ORF3a89T89IaCaaTa55AY.1130.000712
ORF3a89T89IaCaaTa55AY.160.001898
ORF3a89T89IaCaaTa55AY.46.20.003177
ORF3a89T89IaCaaTa55AY.75.10.000902
ORF3a89T89IaCaaTa55B.1.1.3540.02193
ORF3a89T89IaCaaTa55B.1.351.20.001513
ORF3a89T89IaCaaTa55B.1.438.10.000536
ORF3a89T89IaCaaTa55P.1.170.000809
ORF3a89T89IaCaaTa44AY.140.000352
ORF3a89T89IaCaaTa44AY.34.10.00204
ORF3a89T89IaCaaTa44AY.360.000593
ORF3a89T89IaCaaTa44AY.90.00027
ORF3a89T89IaCaaTa44AY.9.20.000147
ORF3a89T89IaCaaTa44AY.970.006803
ORF3a89T89IaCaaTa44B0.000511
ORF3a89T89IaCaaTa44B.1.1.1980.005874
ORF3a89T89IaCaaTa44B.1.1.2530.010025
ORF3a89T89IaCaaTa44B.1.1.280.001245
ORF3a89T89IaCaaTa44B.1.1.2980.003448
ORF3a89T89IaCaaTa44B.1.1.3980.012903
ORF3a89T89IaCaaTa44B.1.1.870.266667
ORF3a89T89IaCaaTa44B.1.177.40.000844
ORF3a89T89IaCaaTa44B.1.177.540.002426
ORF3a89T89IaCaaTa44B.1.177.860.000734
ORF3a89T89IaCaaTa44B.1.2340.000528
ORF3a89T89IaCaaTa44B.1.258.170.000416
ORF3a89T89IaCaaTa44B.1.4990.004202
ORF3a89T89IaCaaTa44B.1.5610.001588
ORF3a89T89IaCaaTa44B.1.5950.001044
ORF3a89T89IaCaaTa44B.60.00364
ORF3a89T89IaCaaTa44C.360.003643
ORF3a89T89IaCaaTa44Q.10.000505
ORF3a89T89IaCaaTa33AY.5.30.001012
ORF3a89T89IaCaaTa33AY.7.10.000338
ORF3a89T89IaCaaTa33AY.710.001425
ORF3a89T89IaCaaTa33AY.780.004622
ORF3a89T89IaCaaTa33AY.98.10.000145
ORF3a89T89IaCaaTa33AY.990.003148
ORF3a89T89IaCaaTa33B.1.1.1570.00274
ORF3a89T89IaCaaTa33B.1.1.3180.000905
ORF3a89T89IaCaaTa33B.1.1.390.001529
ORF3a89T89IaCaaTa33B.1.1.4340.001046
ORF3a89T89IaCaaTa33B.1.1.450.042254
ORF3a89T89IaCaaTa33B.1.1.630.001157
ORF3a89T89IaCaaTa33B.1.160.250.033333
ORF3a89T89IaCaaTa33B.1.177.100.002634
ORF3a89T89IaCaaTa33B.1.177.440.001557
ORF3a89T89IaCaaTa33B.1.177.570.000843
ORF3a89T89IaCaaTa33B.1.177.770.002179
ORF3a89T89IaCaaTa33B.1.177.810.000568
ORF3a89T89IaCaaTa33B.1.2650.003812
ORF3a89T89IaCaaTa33B.1.360.000438
ORF3a89T89IaCaaTa33B.1.36.290.001552
ORF3a89T89IaCaaTa33B.1.5430.03
ORF3a89T89IaCaaTa33B.1.5820.001472
ORF3a89T89IaCaaTa33Q.40.001364
ORF3a89T89IaCaaTa22AY.10.000791
ORF3a89T89IaCaaTa22AY.1100.000225
ORF3a89T89IaCaaTa22AY.1110.000366
ORF3a89T89IaCaaTa22AY.120.000632
ORF3a89T89IaCaaTa22AY.120.2.10.000997
ORF3a89T89IaCaaTa22AY.29.10.000441
ORF3a89T89IaCaaTa22AY.300.000791
ORF3a89T89IaCaaTa22AY.39.1.10.001449
ORF3a89T89IaCaaTa22AY.4.40.000818
ORF3a89T89IaCaaTa22AY.460.000208
ORF3a89T89IaCaaTa22AY.5.40.000553
ORF3a89T89IaCaaTa22AY.530.000575
ORF3a89T89IaCaaTa22AY.590.001059
ORF3a89T89IaCaaTa22AY.660.002139
ORF3a89T89IaCaaTa22AY.680.000547
ORF3a89T89IaCaaTa22AY.690.000373
ORF3a89T89IaCaaTa22AY.850.000854
ORF3a89T89IaCaaTa22AY.9.10.000167
ORF3a89T89IaCaaTa22AY.920.000575
ORF3a89T89IaCaaTa22B.1.1.1700.002494
ORF3a89T89IaCaaTa22B.1.1.1740.006757
ORF3a89T89IaCaaTa22B.1.1.2050.007435
ORF3a89T89IaCaaTa22B.1.1.2220.000408
ORF3a89T89IaCaaTa22B.1.1.2290.011494
ORF3a89T89IaCaaTa22B.1.1.2650.006309
ORF3a89T89IaCaaTa22B.1.1.2940.002532
ORF3a89T89IaCaaTa22B.1.1.3160.00185
ORF3a89T89IaCaaTa22B.1.1.370.000386
ORF3a89T89IaCaaTa22B.1.1.3700.025316
ORF3a89T89IaCaaTa22B.1.1.3720.001377
ORF3a89T89IaCaaTa22B.1.1.3970.004505
ORF3a89T89IaCaaTa22B.1.1.4640.002946
ORF3a89T89IaCaaTa22B.1.1.4860.003155
ORF3a89T89IaCaaTa22B.1.1.5230.003125
ORF3a89T89IaCaaTa22B.1.1270.004396
ORF3a89T89IaCaaTa22B.1.1310.017544
ORF3a89T89IaCaaTa22B.1.177.190.002861
ORF3a89T89IaCaaTa22B.1.177.660.083333
ORF3a89T89IaCaaTa22B.1.3400.008584
ORF3a89T89IaCaaTa22B.1.36.380.003284
ORF3a89T89IaCaaTa22B.1.4040.002604
ORF3a89T89IaCaaTa22B.1.4280.002041
ORF3a89T89IaCaaTa22B.1.4590.008163
ORF3a89T89IaCaaTa22B.1.4700.002809
ORF3a89T89IaCaaTa22B.1.5230.004902
ORF3a89T89IaCaaTa22B.1.5440.012048
ORF3a89T89IaCaaTa22B.1.5680.002222
ORF3a89T89IaCaaTa22B.1.617.30.00597
ORF3a89T89IaCaaTa22B.1.621.10.001012
ORF3a89T89IaCaaTa22B.1.6280.000705
ORF3a89T89IaCaaTa22B.400.000729
ORF3a89T89IaCaaTa22C.36.30.001134
ORF3a89T89IaCaaTa22D.20.00015
ORF3a89T89IaCaaTa11A0.000387
ORF3a89T89IaCaaTa11A.10.000282
ORF3a89T89IaCaaTa11A.210.00277
ORF3a89T89IaCaaTa11AY.100.00053
ORF3a89T89IaCaaTa11AY.110.001339
ORF3a89T89IaCaaTa11AY.116.10.000311
ORF3a89T89IaCaaTa11AY.1180.000063
ORF3a89T89IaCaaTa11AY.120.20.001285
ORF3a89T89IaCaaTa11AY.280.00189
ORF3a89T89IaCaaTa11AY.340.000097
ORF3a89T89IaCaaTa11AY.4.2.10.000149
ORF3a89T89IaCaaTa11AY.4.30.000842
ORF3a89T89IaCaaTa11AY.410.000294
ORF3a89T89IaCaaTa11AY.46.10.001027
ORF3a89T89IaCaaTa11AY.46.30.000934
ORF3a89T89IaCaaTa11AY.640.000595
ORF3a89T89IaCaaTa11AY.650.000533
ORF3a89T89IaCaaTa11AY.700.000209
ORF3a89T89IaCaaTa11AY.720.001361
ORF3a89T89IaCaaTa11AY.740.000116
ORF3a89T89IaCaaTa11AY.770.001127
ORF3a89T89IaCaaTa11AY.810.001992
ORF3a89T89IaCaaTa11AY.840.000437
ORF3a89T89IaCaaTa11AY.860.00083
ORF3a89T89IaCaaTa11AY.870.000833
ORF3a89T89IaCaaTa11AY.900.000684
ORF3a89T89IaCaaTa11AY.940.000443
ORF3a89T89IaCaaTa11B.1.1.100.001115
ORF3a89T89IaCaaTa11B.1.1.1100.090909
ORF3a89T89IaCaaTa11B.1.1.1630.007634
ORF3a89T89IaCaaTa11B.1.1.2160.00089
ORF3a89T89IaCaaTa11B.1.1.2420.043478
ORF3a89T89IaCaaTa11B.1.1.2570.009709
ORF3a89T89IaCaaTa11B.1.1.2630.001558
ORF3a89T89IaCaaTa11B.1.1.2960.018182
ORF3a89T89IaCaaTa11B.1.1.3190.017544
ORF3a89T89IaCaaTa11B.1.1.330.000421
ORF3a89T89IaCaaTa11B.1.1.430.014925
ORF3a89T89IaCaaTa11B.1.1.4320.001266
ORF3a89T89IaCaaTa11B.1.1.4620.008621
ORF3a89T89IaCaaTa11B.1.1.5060.037037
ORF3a89T89IaCaaTa11B.1.1.5170.006803
ORF3a89T89IaCaaTa11B.1.1.5250.005464
ORF3a89T89IaCaaTa11B.1.1.540.003021
ORF3a89T89IaCaaTa11B.1.1.610.008772
ORF3a89T89IaCaaTa11B.1.1.700.000341
ORF3a89T89IaCaaTa11B.1.1.830.00271
ORF3a89T89IaCaaTa11B.1.1080.005814
ORF3a89T89IaCaaTa11B.1.1280.000635
ORF3a89T89IaCaaTa11B.1.130.002375
ORF3a89T89IaCaaTa11B.1.140.017544
ORF3a89T89IaCaaTa11B.1.1470.000756
ORF3a89T89IaCaaTa11B.1.1570.002985
ORF3a89T89IaCaaTa11B.1.160.120.00641
ORF3a89T89IaCaaTa11B.1.177.110.001698
ORF3a89T89IaCaaTa11B.1.177.230.003236
ORF3a89T89IaCaaTa11B.1.177.50.001242
ORF3a89T89IaCaaTa11B.1.177.600.000218
ORF3a89T89IaCaaTa11B.1.177.620.001192
ORF3a89T89IaCaaTa11B.1.2010.005682
ORF3a89T89IaCaaTa11B.1.2100.002132
ORF3a89T89IaCaaTa11B.1.2790.000514
ORF3a89T89IaCaaTa11B.1.3200.001245
ORF3a89T89IaCaaTa11B.1.3240.001605
ORF3a89T89IaCaaTa11B.1.3250.006897
ORF3a89T89IaCaaTa11B.1.3460.001311
ORF3a89T89IaCaaTa11B.1.3490.000715
ORF3a89T89IaCaaTa11B.1.351.30.000876
ORF3a89T89IaCaaTa11B.1.3540.043478
ORF3a89T89IaCaaTa11B.1.36.100.004785
ORF3a89T89IaCaaTa11B.1.36.240.006173
ORF3a89T89IaCaaTa11B.1.36.270.000763
ORF3a89T89IaCaaTa11B.1.36.360.000602
ORF3a89T89IaCaaTa11B.1.3610.001289
ORF3a89T89IaCaaTa11B.1.3670.000792
ORF3a89T89IaCaaTa11B.1.3890.001002
ORF3a89T89IaCaaTa11B.1.3910.001127
ORF3a89T89IaCaaTa11B.1.4000.000429
ORF3a89T89IaCaaTa11B.1.4080.00369
ORF3a89T89IaCaaTa11B.1.4620.007246
ORF3a89T89IaCaaTa11B.1.5380.008065
ORF3a89T89IaCaaTa11B.1.5520.015152
ORF3a89T89IaCaaTa11B.1.5560.007519
ORF3a89T89IaCaaTa11B.1.564.10.001577
ORF3a89T89IaCaaTa11B.1.5650.00081
ORF3a89T89IaCaaTa11B.1.5760.000907
ORF3a89T89IaCaaTa11B.1.6000.005848
ORF3a89T89IaCaaTa11B.1.6090.000479
ORF3a89T89IaCaaTa11B.1.6370.000073
ORF3a89T89IaCaaTa11B.4.60.016667
ORF3a89T89IaCaaTa11C.110.010638
ORF3a89T89IaCaaTa11C.160.00106
ORF3a89T89IaCaaTa11C.250.125
ORF3a89T89IaCaaTa11C.300.001727
ORF3a89T89IaCaaTa11C.320.023256
ORF3a89T89IaCaaTa11C.350.000774
ORF3a89T89IaCaaTa11C.80.004464
ORF3a89T89IaCaaTa11P.1.20.001156
ORF3a89T89IaCaaTa11P.1.70.000319