CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = T24N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a24T24NnonsynaCtaAt4044020.99504925462-25464
ORF3a24T24NnonsynaCTaAC40420.0049504925462-25464

Details of the mutation T24N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a24T24NaCtaAt402404All0.000077
ORF3a24T24NaCTaAC2404All0
ORF3a24T24NaCtaAt7373AY.430.000323
ORF3a24T24NaCtaAt6868AY.4.20.001475
ORF3a24T24NaCtaAt5959B.1.617.20.000222
ORF3a24T24NaCtaAt4040AY.290.000631
ORF3a24T24NaCtaAt3131B.1.1.70.000028
ORF3a24T24NaCtaAt2424AY.99.20.002212
ORF3a24T24NaCtaAt1414AY.40.000022
ORF3a24T24NaCtaAt1010AY.39.20.015408
ORF3a24T24NaCtaAt99AY.5.40.00249
ORF3a24T24NaCtaAt88AY.710.0038
ORF3a24T24NaCtaAt66AY.390.000148
ORF3a24T24NaCtaAt66B.10.000055
ORF3a24T24NaCtaAt66B.1.10.000109
ORF3a24T24NaCtaAt55AY.250.00003
ORF3a24T24NaCtaAt44AY.460.000416
ORF3a24T24NaCTaAC230.111111
ORF3a24T24NaCtaAt130.055556
ORF3a24T24NaCtaAt33AY.1200.000112
ORF3a24T24NaCtaAt33AY.34.10.00153
ORF3a24T24NaCtaAt33AY.440.000018
ORF3a24T24NaCtaAt33B.1.20.000026
ORF3a24T24NaCtaAt33B.1.4290.000071
ORF3a24T24NaCtaAt33P.10.000047
ORF3a24T24NaCtaAt22B.1.1.4870.011173
ORF3a24T24NaCtaAt22B.1.6090.000959
ORF3a24T24NaCtaAt11AY.1020.000027
ORF3a24T24NaCtaAt11AY.1030.000006
ORF3a24T24NaCtaAt11AY.1160.000287
ORF3a24T24NaCtaAt11AY.116.10.000311
ORF3a24T24NaCtaAt11AY.1190.000035
ORF3a24T24NaCtaAt11AY.260.000028
ORF3a24T24NaCtaAt11AY.300.000396
ORF3a24T24NaCtaAt11AY.320.000532
ORF3a24T24NaCtaAt11AY.470.000031
ORF3a24T24NaCtaAt11AY.540.000095
ORF3a24T24NaCtaAt11B.1.1.390.00051
ORF3a24T24NaCtaAt11B.1.1890.004292
ORF3a24T24NaCtaAt11B.1.2430.00007
ORF3a24T24NaCtaAt11C.140.004329
ORF3a24T24NaCtaAt11L.30.003546
ORF3a24T24NaCtaAt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.