CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = T24A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a24T24AnonsynActGct109109125462-25464

Details of the mutation T24A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a24T24AActGct109109All0.000021
ORF3a24T24AActGct2424B.1.177.600.005242
ORF3a24T24AActGct1616B.1.1.70.000014
ORF3a24T24AActGct1515B.1.617.20.000056
ORF3a24T24AActGct1212AY.430.000053
ORF3a24T24AActGct1111AY.40.000017
ORF3a24T24AActGct88AY.34.10.00408
ORF3a24T24AActGct55AY.250.00003
ORF3a24T24AActGct33AY.390.000074
ORF3a24T24AActGct33AY.440.000018
ORF3a24T24AActGct22AY.1190.000071
ORF3a24T24AActGct22B.1.20.000018
ORF3a24T24AActGct11AY.240.000431
ORF3a24T24AActGct11AY.260.000028
ORF3a24T24AActGct11AY.340.000097
ORF3a24T24AActGct11AY.4.20.000022
ORF3a24T24AActGct11AY.600.000938
ORF3a24T24AActGct11B.1.2210.000071
ORF3a24T24AActGct11B.1.5950.000261
ORF3a24T24AActGct11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.