CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = T229T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a229T229TsynacCacT367425410.69161726077-26079
ORF3a229T229TsynacCacA367411010.29967326077-26079
ORF3a229T229TsynacCacG3674320.0087098526077-26079

Details of the mutation T229T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a229T229TacCacT25413674All0.000486
ORF3a229T229TacCacA11013674All0.000211
ORF3a229T229TacCacG323674All0.000006
ORF3a229T229TacCacT11431143AY.260.032359
ORF3a229T229TacCacA742742AY.580.673321
ORF3a229T229TacCacT251289AY.40.000391
ORF3a229T229TacCacA37289AY.40.000058
ORF3a229T229TacCacG1289AY.40.000002
ORF3a229T229TacCacT245259B.1.1.70.000219
ORF3a229T229TacCacA13259B.1.1.70.000012
ORF3a229T229TacCacG1259B.1.1.70.000001
ORF3a229T229TacCacA189240B.1.617.20.000712
ORF3a229T229TacCacT51240B.1.617.20.000192
ORF3a229T229TacCacT125130AY.1030.000776
ORF3a229T229TacCacA3130AY.1030.000019
ORF3a229T229TacCacG2130AY.1030.000012
ORF3a229T229TacCacT115117B.1.20.001013
ORF3a229T229TacCacA2117B.1.20.000018
ORF3a229T229TacCacT7474B.1.5240.104079
ORF3a229T229TacCacT6568P.10.001024
ORF3a229T229TacCacA368P.10.000047
ORF3a229T229TacCacT5353AY.29.10.011687
ORF3a229T229TacCacT3247AY.430.000142
ORF3a229T229TacCacA1547AY.430.000066
ORF3a229T229TacCacT4242AY.1100.004733
ORF3a229T229TacCacT2324B.1.10.000417
ORF3a229T229TacCacG124B.1.10.000018
ORF3a229T229TacCacT2022AY.200.000777
ORF3a229T229TacCacG122AY.200.000039
ORF3a229T229TacCacA122AY.200.000039
ORF3a229T229TacCacT2121B.1.1770.000277
ORF3a229T229TacCacT1420B.10.000128
ORF3a229T229TacCacA420B.10.000037
ORF3a229T229TacCacG220B.10.000018
ORF3a229T229TacCacT1719AY.750.000952
ORF3a229T229TacCacA219AY.750.000112
ORF3a229T229TacCacT1318AY.440.000079
ORF3a229T229TacCacA518AY.440.00003
ORF3a229T229TacCacT1818B.1.1.700.006139
ORF3a229T229TacCacG1718B.1.2430.001183
ORF3a229T229TacCacT118B.1.2430.00007
ORF3a229T229TacCacT1414B.1.360.002043
ORF3a229T229TacCacT1314B.1.4290.000306
ORF3a229T229TacCacA114B.1.4290.000024
ORF3a229T229TacCacT1414B.6.60.012444
ORF3a229T229TacCacT712AY.1020.000186
ORF3a229T229TacCacA512AY.1020.000133
ORF3a229T229TacCacT1111AY.1090.008136
ORF3a229T229TacCacG711AY.30.00007
ORF3a229T229TacCacT311AY.30.00003
ORF3a229T229TacCacA111AY.30.00001
ORF3a229T229TacCacA811AY.50.000165
ORF3a229T229TacCacT311AY.50.000062
ORF3a229T229TacCacA910AY.1200.000335
ORF3a229T229TacCacT110AY.1200.000037
ORF3a229T229TacCacT89AY.1160.002294
ORF3a229T229TacCacA19AY.1160.000287
ORF3a229T229TacCacT99AY.1190.000318
ORF3a229T229TacCacT99AY.250.000054
ORF3a229T229TacCacA48AY.390.000099
ORF3a229T229TacCacT48AY.390.000099
ORF3a229T229TacCacA68AY.75.10.001082
ORF3a229T229TacCacT28AY.75.10.000361
ORF3a229T229TacCacT88B.1.2210.000568
ORF3a229T229TacCacA66AY.230.000418
ORF3a229T229TacCacA46AY.610.000419
ORF3a229T229TacCacT26AY.610.00021
ORF3a229T229TacCacT46AY.9.20.000147
ORF3a229T229TacCacA26AY.9.20.000073
ORF3a229T229TacCacT66B.1.177.100.005268
ORF3a229T229TacCacT66P.1.140.000287
ORF3a229T229TacCacT45AY.1130.00057
ORF3a229T229TacCacA15AY.1130.000142
ORF3a229T229TacCacT55AY.980.000395
ORF3a229T229TacCacA35B.1.6210.000266
ORF3a229T229TacCacT25B.1.6210.000177
ORF3a229T229TacCacA240.111111
ORF3a229T229TacCacT240.111111
ORF3a229T229TacCacT44AY.10.001583
ORF3a229T229TacCacA44AY.100.00212
ORF3a229T229TacCacA44AY.190.004561
ORF3a229T229TacCacT44B.1.1600.000125
ORF3a229T229TacCacT44B.1.5750.001214
ORF3a229T229TacCacT44B.1.88.10.019231
ORF3a229T229TacCacA23B.1.3510.000059
ORF3a229T229TacCacT13B.1.3510.00003
ORF3a229T229TacCacA23B.1.4970.00063
ORF3a229T229TacCacT13B.1.4970.000315
ORF3a229T229TacCacT33R.10.00027
ORF3a229T229TacCacA22AY.120.10.000642
ORF3a229T229TacCacT22AY.290.000032
ORF3a229T229TacCacT22AY.360.000296
ORF3a229T229TacCacT12AY.4.20.000022
ORF3a229T229TacCacA12AY.4.20.000022
ORF3a229T229TacCacT22AY.46.20.001271
ORF3a229T229TacCacT22AY.470.000062
ORF3a229T229TacCacT22AY.620.000871
ORF3a229T229TacCacT12B0.000128
ORF3a229T229TacCacA12B0.000128
ORF3a229T229TacCacT22B.1.1.3170.000823
ORF3a229T229TacCacT22B.1.1.3720.001377
ORF3a229T229TacCacT22B.1.1.4860.003155
ORF3a229T229TacCacT22B.1.258.170.000208
ORF3a229T229TacCacT22B.1.36.220.002415
ORF3a229T229TacCacT22B.1.36.290.001035
ORF3a229T229TacCacT22B.1.36.80.002
ORF3a229T229TacCacT22B.1.4700.002809
ORF3a229T229TacCacT22B.1.5250.000226
ORF3a229T229TacCacT22B.1.5820.000981
ORF3a229T229TacCacT22D.20.00015
ORF3a229T229TacCacT11AT.10.005128
ORF3a229T229TacCacT11AY.1000.000046
ORF3a229T229TacCacT11AY.1140.000231
ORF3a229T229TacCacT11AY.1180.000063
ORF3a229T229TacCacA11AY.130.000161
ORF3a229T229TacCacT11AY.23.10.000417
ORF3a229T229TacCacT11AY.300.000396
ORF3a229T229TacCacA11AY.340.000097
ORF3a229T229TacCacT11AY.380.000499
ORF3a229T229TacCacT11AY.4.2.10.000149
ORF3a229T229TacCacT11AY.410.000294
ORF3a229T229TacCacA11AY.450.000122
ORF3a229T229TacCacT11AY.460.000104
ORF3a229T229TacCacA11AY.520.000814
ORF3a229T229TacCacA11AY.540.000095
ORF3a229T229TacCacA11AY.590.00053
ORF3a229T229TacCacT11AY.60.000041
ORF3a229T229TacCacT11AY.670.000464
ORF3a229T229TacCacT11AY.680.000274
ORF3a229T229TacCacA11AY.700.000209
ORF3a229T229TacCacT11AY.710.000475
ORF3a229T229TacCacA11AY.880.000884
ORF3a229T229TacCacA11AY.98.10.000048
ORF3a229T229TacCacT11B.1.1.2220.000204
ORF3a229T229TacCacT11B.1.1.3160.000925
ORF3a229T229TacCacT11B.1.1.370.000193
ORF3a229T229TacCacA11B.1.1.440.00241
ORF3a229T229TacCacT11B.1.1.5190.00004
ORF3a229T229TacCacA11B.1.1180.006711
ORF3a229T229TacCacA11B.1.177.150.000631
ORF3a229T229TacCacT11B.1.1950.005025
ORF3a229T229TacCacA11B.1.2340.000132
ORF3a229T229TacCacT11B.1.36.100.004785
ORF3a229T229TacCacT11B.1.36.170.000494
ORF3a229T229TacCacA11B.1.4270.00005
ORF3a229T229TacCacA11B.1.466.20.000391
ORF3a229T229TacCacT11B.1.5260.000024
ORF3a229T229TacCacT11B.1.5770.000687
ORF3a229T229TacCacT11B.1.617.10.000129
ORF3a229T229TacCacA11B.1.6370.000073
ORF3a229T229TacCacT11C.370.000116
ORF3a229T229TacCacT11P.1.120.000484