CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 223 | T223I | nonsyn | aCt | aTt | 35141 | 35137 | 0.999886 | 26059-26061 | |
ORF3a | 223 | T223I | nonsyn | aCT | aTA | 35141 | 4 | 0.000113827 | 26059-26061 |
Details of the mutation T223I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 223 | T223I | aCt | aTt | 35137 | 35141 | All | 0.00672 |
ORF3a | 223 | T223I | aCT | aTA | 4 | 35141 | All | 0.000001 |
ORF3a | 223 | T223I | aCt | aTt | 6900 | 6900 | B.1.2 | 0.060757 |
ORF3a | 223 | T223I | aCt | aTt | 4536 | 4536 | AD.2 | 0.993212 |
ORF3a | 223 | T223I | aCt | aTt | 3480 | 3480 | B.1.1.7 | 0.003115 |
ORF3a | 223 | T223I | aCt | aTt | 2458 | 2458 | AY.36 | 0.36431 |
ORF3a | 223 | T223I | aCt | aTt | 1799 | 1799 | AY.4 | 0.0028 |
ORF3a | 223 | T223I | aCt | aTt | 1788 | 1791 | B.1 | 0.016377 |
ORF3a | 223 | T223I | aCT | aTA | 3 | 1791 | B.1 | 0.000027 |
ORF3a | 223 | T223I | aCt | aTt | 1119 | 1119 | B.1.1.216 | 0.996438 |
ORF3a | 223 | T223I | aCt | aTt | 1051 | 1051 | B.1.1.416 | 0.951131 |
ORF3a | 223 | T223I | aCt | aTt | 784 | 784 | B.1.36.27 | 0.598473 |
ORF3a | 223 | T223I | aCt | aTt | 718 | 718 | AY.43 | 0.003181 |
ORF3a | 223 | T223I | aCt | aTt | 648 | 648 | B.1.36 | 0.094543 |
ORF3a | 223 | T223I | aCt | aTt | 634 | 634 | B.1.1.433 | 0.903134 |
ORF3a | 223 | T223I | aCt | aTt | 582 | 582 | B.1.1 | 0.010558 |
ORF3a | 223 | T223I | aCt | aTt | 432 | 432 | B.1.111 | 0.507638 |
ORF3a | 223 | T223I | aCt | aTt | 407 | 407 | P.1.14 | 0.019455 |
ORF3a | 223 | T223I | aCt | aTt | 310 | 310 | B.1.177 | 0.004082 |
ORF3a | 223 | T223I | aCt | aTt | 271 | 271 | AM.4 | 0.967857 |
ORF3a | 223 | T223I | aCt | aTt | 269 | 269 | P.1.16 | 0.100636 |
ORF3a | 223 | T223I | aCt | aTt | 256 | 256 | C.16 | 0.271474 |
ORF3a | 223 | T223I | aCt | aTt | 254 | 254 | AY.25 | 0.001528 |
ORF3a | 223 | T223I | aCt | aTt | 243 | 243 | B.1.617.2 | 0.000915 |
ORF3a | 223 | T223I | aCt | aTt | 240 | 240 | AD.1 | 0.987654 |
ORF3a | 223 | T223I | aCt | aTt | 229 | 229 | AY.103 | 0.001422 |
ORF3a | 223 | T223I | aCt | aTt | 226 | 226 | AY.3 | 0.002248 |
ORF3a | 223 | T223I | aCt | aTt | 219 | 219 | B.1.160 | 0.00683 |
ORF3a | 223 | T223I | aCt | aTt | 218 | 218 | B.1.1.519 | 0.008657 |
ORF3a | 223 | T223I | aCt | aTt | 204 | 204 | P.1 | 0.003214 |
ORF3a | 223 | T223I | aCt | aTt | 160 | 160 | B.1.243 | 0.011134 |
ORF3a | 223 | T223I | aCt | aTt | 143 | 143 | B.1.265 | 0.181703 |
ORF3a | 223 | T223I | aCt | aTt | 135 | 135 | AY.120 | 0.005019 |
ORF3a | 223 | T223I | aCt | aTt | 131 | 131 | B.1.337 | 0.731844 |
ORF3a | 223 | T223I | aCt | aTt | 127 | 127 | B.1.1.294 | 0.160759 |
ORF3a | 223 | T223I | aCt | aTt | 119 | 119 | B.1.609 | 0.057047 |
ORF3a | 223 | T223I | aCt | aTt | 115 | 115 | AB.1 | 0.942623 |
ORF3a | 223 | T223I | aCt | aTt | 113 | 113 | B.1.1.315 | 0.957627 |
ORF3a | 223 | T223I | aCt | aTt | 108 | 108 | B.1.429 | 0.002541 |
ORF3a | 223 | T223I | aCt | aTt | 107 | 107 | AY.44 | 0.000651 |
ORF3a | 223 | T223I | aCt | aTt | 106 | 106 | B.1.1.428 | 1 |
ORF3a | 223 | T223I | aCt | aTt | 103 | 103 | B.1.596 | 0.008975 |
ORF3a | 223 | T223I | aCt | aTt | 97 | 97 | B.1.1.1 | 0.031689 |
ORF3a | 223 | T223I | aCt | aTt | 96 | 96 | B.1.523 | 0.235294 |
ORF3a | 223 | T223I | aCt | aTt | 93 | 93 | B.1.577 | 0.063918 |
ORF3a | 223 | T223I | aCt | aTt | 83 | 83 | P.1.10 | 0.022366 |
ORF3a | 223 | T223I | aCt | aTt | 78 | 78 | B.1.466.2 | 0.030516 |
ORF3a | 223 | T223I | aCt | aTt | 77 | 77 | B.1.377 | 0.351598 |
ORF3a | 223 | T223I | aCt | aTt | 75 | 75 | B.1.398 | 0.223214 |
ORF3a | 223 | T223I | aCt | aTt | 74 | 74 | P.1.7 | 0.023627 |
ORF3a | 223 | T223I | aCt | aTt | 71 | 71 | B.1.1.33 | 0.029882 |
ORF3a | 223 | T223I | aCt | aTt | 66 | 66 | B.1.36.35 | 0.171875 |
ORF3a | 223 | T223I | aCt | aTt | 63 | 63 | AY.101 | 0.030897 |
ORF3a | 223 | T223I | aCt | aTt | 57 | 57 | B.1.539 | 1 |
ORF3a | 223 | T223I | aCt | aTt | 50 | 50 | AY.102 | 0.001326 |
ORF3a | 223 | T223I | aCt | aTt | 48 | 48 | AY.20 | 0.001866 |
ORF3a | 223 | T223I | aCt | aTt | 47 | 47 | B.1.595 | 0.012265 |
ORF3a | 223 | T223I | aCt | aTt | 45 | 45 | P.1.15 | 0.010455 |
ORF3a | 223 | T223I | aCt | aTt | 44 | 44 | B.1.1.209 | 0.392857 |
ORF3a | 223 | T223I | aCt | aTt | 44 | 44 | B.1.36.22 | 0.05314 |
ORF3a | 223 | T223I | aCt | aTt | 44 | 44 | P.1.17.1 | 0.038495 |
ORF3a | 223 | T223I | aCt | aTt | 43 | 43 | M.1 | 1 |
ORF3a | 223 | T223I | aCt | aTt | 42 | 42 | AY.33 | 0.002805 |
ORF3a | 223 | T223I | aCt | aTt | 41 | 41 | B.1.558 | 0.187215 |
ORF3a | 223 | T223I | aCt | aTt | 40 | 40 | B.1.1.404 | 0.634921 |
ORF3a | 223 | T223I | aCt | aTt | 39 | 39 | B.1.1.63 | 0.015046 |
ORF3a | 223 | T223I | aCt | aTt | 38 | 38 | AY.83 | 0.065517 |
ORF3a | 223 | T223I | aCt | aTt | 38 | 38 | B.1.396 | 0.026817 |
ORF3a | 223 | T223I | aCt | aTt | 37 | 37 | B.1.617.1 | 0.004772 |
ORF3a | 223 | T223I | aCt | aTt | 36 | 36 | AY.119 | 0.001271 |
ORF3a | 223 | T223I | aCt | aTt | 36 | 36 | B.1.351 | 0.00107 |
ORF3a | 223 | T223I | aCt | aTt | 36 | 36 | B.1.517.1 | 0.189474 |
ORF3a | 223 | T223I | aCt | aTt | 34 | 34 | B.1.1.28 | 0.010582 |
ORF3a | 223 | T223I | aCt | aTt | 34 | 34 | B.1.401 | 0.278689 |
ORF3a | 223 | T223I | aCt | aTt | 31 | 31 | C.1 | 0.074163 |
ORF3a | 223 | T223I | aCt | aTt | 30 | 30 | AM.3 | 1 |
ORF3a | 223 | T223I | aCt | aTt | 29 | 29 | B.1.36.29 | 0.015003 |
ORF3a | 223 | T223I | aCt | aTt | 29 | 29 | B.1.36.38 | 0.047619 |
ORF3a | 223 | T223I | aCt | aTt | 28 | 28 | AY.39 | 0.000692 |
ORF3a | 223 | T223I | aCt | aTt | 28 | 28 | C.1.2 | 0.119149 |
ORF3a | 223 | T223I | aCt | aTt | 27 | 27 | B.1.1.153 | 0.029573 |
ORF3a | 223 | T223I | aCt | aTt | 25 | 25 | C.36 | 0.022769 |
ORF3a | 223 | T223I | aCt | aTt | 24 | 24 | B.1.526 | 0.000564 |
ORF3a | 223 | T223I | aCt | aTt | 23 | 23 | B.1.1.306 | 0.010083 |
ORF3a | 223 | T223I | aCt | aTt | 23 | 23 | C.37 | 0.002669 |
ORF3a | 223 | T223I | aCt | aTt | 22 | 22 | AD.2.1 | 1 |
ORF3a | 223 | T223I | aCt | aTt | 22 | 22 | AY.73 | 0.014637 |
ORF3a | 223 | T223I | aCt | aTt | 20 | 20 | B.1.36.8 | 0.02 |
ORF3a | 223 | T223I | aCt | aTt | 19 | 19 | AY.100 | 0.000874 |
ORF3a | 223 | T223I | aCt | aTt | 19 | 19 | AY.46.6 | 0.001372 |
ORF3a | 223 | T223I | aCt | aTt | 19 | 19 | P.2 | 0.003546 |
ORF3a | 223 | T223I | aCt | aTt | 18 | 18 | AY.42 | 0.000724 |
ORF3a | 223 | T223I | aCt | aTt | 18 | 18 | B.1.177.81 | 0.003408 |
ORF3a | 223 | T223I | aCt | aTt | 18 | 18 | B.1.391 | 0.020293 |
ORF3a | 223 | T223I | aCt | aTt | 17 | 17 | B.1.1.284 | 0.001826 |
ORF3a | 223 | T223I | aCt | aTt | 16 | 16 | B.1.1.174 | 0.054054 |
ORF3a | 223 | T223I | aCt | aTt | 16 | 16 | B.1.258 | 0.001065 |
ORF3a | 223 | T223I | aCt | aTt | 16 | 16 | B.1.456 | 0.052288 |
ORF3a | 223 | T223I | aCt | aTt | 16 | 16 | P.1.17 | 0.002588 |
ORF3a | 223 | T223I | aCt | aTt | 15 | 15 | A.2.5 | 0.007485 |
ORF3a | 223 | T223I | aCt | aTt | 15 | 15 | AY.29 | 0.000237 |
ORF3a | 223 | T223I | aCt | aTt | 15 | 15 | B.1.177.86 | 0.002752 |
ORF3a | 223 | T223I | aCt | aTt | 15 | 15 | B.1.565 | 0.012156 |
ORF3a | 223 | T223I | aCt | aTt | 15 | 15 | B.1.597 | 0.069444 |
ORF3a | 223 | T223I | aCt | aTt | 14 | 14 | AY.4.5 | 0.001505 |
ORF3a | 223 | T223I | aCt | aTt | 14 | 14 | AY.92 | 0.004022 |
ORF3a | 223 | T223I | aCt | aTt | 14 | 14 | B.1.1.222 | 0.002856 |
ORF3a | 223 | T223I | aCt | aTt | 14 | 14 | B.1.1.25 | 0.007959 |
ORF3a | 223 | T223I | aCt | aTt | 14 | 14 | B.1.177.15 | 0.008833 |
ORF3a | 223 | T223I | aCt | aTt | 14 | 14 | B.1.229 | 0.135922 |
ORF3a | 223 | T223I | aCt | aTt | 13 | 13 | B.1.221 | 0.000923 |
ORF3a | 223 | T223I | aCt | aTt | 13 | 13 | B.1.240 | 0.002802 |
ORF3a | 223 | T223I | aCt | aTt | 12 | 12 | A | 0.004644 |
ORF3a | 223 | T223I | aCt | aTt | 12 | 12 | AY.23 | 0.000837 |
ORF3a | 223 | T223I | aCt | aTt | 12 | 12 | AY.4.2.1 | 0.001788 |
ORF3a | 223 | T223I | aCt | aTt | 12 | 12 | B.1.260 | 0.040134 |
ORF3a | 223 | T223I | aCt | aTt | 12 | 12 | B.1.621 | 0.001062 |
ORF3a | 223 | T223I | aCt | aTt | 11 | 11 | B.1.36.36 | 0.006623 |
ORF3a | 223 | T223I | aCt | aTt | 10 | 10 | AY.117 | 0.000845 |
ORF3a | 223 | T223I | aCt | aTt | 10 | 10 | AY.118 | 0.000626 |
ORF3a | 223 | T223I | aCt | aTt | 10 | 10 | AY.4.2 | 0.000217 |
ORF3a | 223 | T223I | aCt | aTt | 10 | 10 | AY.46 | 0.001041 |
ORF3a | 223 | T223I | aCt | aTt | 10 | 10 | AY.47 | 0.000311 |
ORF3a | 223 | T223I | aCt | aTt | 10 | 10 | AY.5 | 0.000206 |
ORF3a | 223 | T223I | aCt | aTt | 10 | 10 | B.1.234 | 0.001319 |
ORF3a | 223 | T223I | aCt | aTt | 10 | 10 | B.1.468 | 0.057143 |
ORF3a | 223 | T223I | aCt | aTt | 9 | 9 | AM.1 | 1 |
ORF3a | 223 | T223I | aCt | aTt | 9 | 9 | AM.2 | 1 |
ORF3a | 223 | T223I | aCt | aTt | 9 | 9 | B.1.1.39 | 0.004587 |
ORF3a | 223 | T223I | aCt | aTt | 9 | 9 | B.1.1.526 | 0.031915 |
ORF3a | 223 | T223I | aCt | aTt | 9 | 9 | B.1.177.21 | 0.000688 |
ORF3a | 223 | T223I | aCt | aTt | 9 | 9 | B.1.232 | 0.004836 |
ORF3a | 223 | T223I | aCt | aTt | 9 | 9 | B.1.427 | 0.000454 |
ORF3a | 223 | T223I | aCt | aTt | 8 | 8 | AY.111 | 0.001465 |
ORF3a | 223 | T223I | aCt | aTt | 8 | 8 | AY.121 | 0.001083 |
ORF3a | 223 | T223I | aCt | aTt | 8 | 8 | B.1.1.214 | 0.000444 |
ORF3a | 223 | T223I | aCt | aTt | 8 | 8 | B.1.1.357 | 1 |
ORF3a | 223 | T223I | aCt | aTt | 8 | 8 | B.1.199 | 0.033058 |
ORF3a | 223 | T223I | aCt | aTt | 8 | 8 | B.1.408 | 0.02952 |
ORF3a | 223 | T223I | aCt | aTt | 8 | 8 | Q.8 | 0.001319 |
ORF3a | 223 | T223I | aCt | aTt | 7 | 7 | AY.26 | 0.000198 |
ORF3a | 223 | T223I | aCt | aTt | 7 | 7 | AY.54 | 0.000667 |
ORF3a | 223 | T223I | aCt | aTt | 7 | 7 | B.1.177.44 | 0.003633 |
ORF3a | 223 | T223I | aCt | aTt | 7 | 7 | B.1.36.17 | 0.003458 |
ORF3a | 223 | T223I | aCt | aTt | 7 | 7 | B.1.371 | 0.007856 |
ORF3a | 223 | T223I | aCt | aTt | 7 | 7 | B.1.533 | 0.067308 |
ORF3a | 223 | T223I | aCt | aTt | 7 | 7 | B.1.582 | 0.003435 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | AY.35 | 0.001398 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | AY.39.1 | 0.000238 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | AY.45 | 0.00073 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | AY.71 | 0.00285 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | AY.84 | 0.002625 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | AY.98.1 | 0.000291 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | AY.99.2 | 0.000553 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | B.1.1.220 | 0.011152 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | B.1.1.351 | 0.01676 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | B.1.1.525 | 0.032787 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | B.1.139 | 0.004399 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | B.1.36.19 | 0.055556 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | B.1.400 | 0.002574 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | B.1.562 | 0.111111 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | B.1.628 | 0.002114 |
ORF3a | 223 | T223I | aCt | aTt | 6 | 6 | D.2 | 0.00045 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | AY.61 | 0.000524 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | AY.65 | 0.002665 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B | 0.000639 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.1.317 | 0.002058 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.1.329 | 0.019231 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.1.403 | 0.128205 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.1.58 | 0.026882 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.145 | 0.263158 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.177.75 | 0.005203 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.192 | 0.046296 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.214 | 0.018315 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.349 | 0.003574 |
ORF3a | 223 | T223I | aCt | aTt | 5 | 5 | B.1.525 | 0.000566 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | AY.113 | 0.00057 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | AY.114 | 0.000924 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | AY.14 | 0.000352 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | AY.16.1 | 0.00188 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | AY.32 | 0.00213 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | AY.34 | 0.000388 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | AY.69 | 0.000747 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | AY.96 | 0.008299 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.1.10 | 0.004459 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.1.170 | 0.004988 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.1.268 | 0.059701 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.1.309 | 0.023392 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.1.335 | 0.051948 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.1.37 | 0.000771 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.1.372 | 0.002755 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.1.409 | 0.011331 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.177.16 | 0.002658 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.201 | 0.022727 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.210 | 0.008529 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.336 | 0.009756 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.36.16 | 0.005698 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.36.24 | 0.024691 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.462 | 0.028986 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.538 | 0.032258 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | B.1.564 | 0.001704 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | N.5 | 0.007067 |
ORF3a | 223 | T223I | aCt | aTt | 4 | 4 | Q.1 | 0.000505 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | AY.109 | 0.002219 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | AY.16 | 0.001139 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | AY.3.1 | 0.000256 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | AY.62 | 0.001307 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.1.261 | 0.025862 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.1.305 | 0.011583 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.1.368 | 0.009259 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.1.432 | 0.003797 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.1.459 | 0.046154 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.1.46 | 0.0131 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.177.10 | 0.002634 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.177.12 | 0.000455 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.177.4 | 0.000633 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.177.7 | 0.000495 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.177.73 | 0.001699 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.214.2 | 0.001799 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.237 | 0.014925 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.369 | 0.000856 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.389 | 0.003006 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.459 | 0.012245 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | B.1.9.5 | 0.017045 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | C.14 | 0.012987 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | Q.3 | 0.000435 |
ORF3a | 223 | T223I | aCt | aTt | 3 | 3 | Q.6 | 0.019868 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | A.23.1 | 0.001408 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | A.27 | 0.003311 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.120.2 | 0.002571 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.27 | 0.000129 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.50 | 0.001599 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.7 | 0.000392 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.82 | 0.002714 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.95 | 0.001522 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.169 | 0.036364 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.189 | 0.003026 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.196 | 0.011429 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.219 | 0.01 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.225 | 0.014388 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.27 | 0.011299 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.279 | 0.002242 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.291 | 0.001485 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.311 | 0.000716 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.116 | 0.023256 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.142 | 0.005797 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.157 | 0.00597 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.177.3 | 0.015267 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.177.76 | 0.004988 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.195 | 0.01005 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.315 | 0.012121 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.351.5 | 0.001199 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.36.10 | 0.009569 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.36.31 | 0.003503 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.367 | 0.001585 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.375 | 0.001639 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.395 | 0.014085 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.399 | 0.003868 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.428 | 0.002041 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.436 | 0.002058 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.471 | 0.005464 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.527 | 0.007407 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.530 | 0.014286 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.623 | 0.001073 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.637 | 0.000146 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.78 | 0.017094 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.1.93 | 0.001867 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | B.55 | 0.0059 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | C.23 | 0.011628 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | C.36.3.1 | 0.005435 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | L.3 | 0.007092 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | N.3 | 0.011628 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | N.9 | 0.011905 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | P.1.2 | 0.002312 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | P.3 | 0.00319 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | Q.4 | 0.00091 |
ORF3a | 223 | T223I | aCt | aTt | 2 | 2 | R.1 | 0.00018 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | A.19 | 0.009434 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | A.25 | 0.018182 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AT.1 | 0.005128 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AU.1 | 0.001266 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.31 | 0.018519 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.63 | 0.000387 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.121 | 0.002427 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.137 | 0.0125 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.159 | 0.004673 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.160 | 0.02381 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.217 | 0.003636 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.226 | 0.005814 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.253 | 0.002506 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.262 | 0.015152 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.319 | 0.017544 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.325 | 0.025641 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.334 | 0.016393 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.336 | 0.016667 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.356 | 0.008547 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.370 | 0.012658 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.371 | 0.010417 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.393 | 0.111111 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.411 | 0.014706 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.484 | 0.1 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.507 | 0.008696 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.518 | 0.006329 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.1.95 | 0.019608 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.158 | 0.02381 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.160.22 | 0.006757 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.160.31 | 0.008065 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.164 | 0.014925 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.189 | 0.004292 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.203 | 0.0625 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.214.3 | 0.007143 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.221.3 | 0.000833 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.242 | 0.018868 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.258.12 | 0.007874 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.263 | 0.047619 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.319 | 0.003049 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.340 | 0.004292 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.350 | 0.002933 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.36.33 | 0.007576 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.36.7 | 0.004 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.379 | 0.017241 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.402 | 0.009804 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.426 | 0.001009 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.433 | 0.003195 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.435 | 0.011364 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.443 | 0.004673 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.466 | 0.023256 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.473 | 0.019231 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.476 | 0.1 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.480 | 0.002488 |
ORF3a | 223 | T223I | aCT | aTA | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.505 | 0.004386 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.506 | 0.02381 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.510 | 0.026316 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.520 | 0.021739 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.521 | 0.004975 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.541 | 0.004425 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.542 | 0.03125 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.545 | 0.014493 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.554 | 0.004405 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.574 | 0.002151 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.589 | 0.007576 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.590 | 0.004545 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.606 | 0.006024 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.612 | 0.002653 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.1.620 | 0.000946 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.4 | 0.002208 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | B.40 | 0.000364 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | C.11 | 0.010638 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | C.3 | 0.007634 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | C.6 | 0.037037 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | N.4 | 0.004255 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 223 | T223I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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