CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 74 | S74S | syn | tcC | tcT | 72952 | 72710 | 0.996683 | 25612-25614 | |
ORF3a | 74 | S74S | syn | tcC | tcA | 72952 | 167 | 0.00228918 | 25612-25614 | |
ORF3a | 74 | S74S | syn | tcC | tcG | 72952 | 73 | 0.00100066 | 25612-25614 | |
ORF3a | 74 | S74S | syn | TCc | AGc | 72952 | 2 | 0.0000274153 | 25612-25614 |
Details of the mutation S74S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 74 | S74S | tcC | tcT | 72710 | 72952 | All | 0.013907 |
ORF3a | 74 | S74S | tcC | tcA | 167 | 72952 | All | 0.000032 |
ORF3a | 74 | S74S | tcC | tcG | 73 | 72952 | All | 0.000014 |
ORF3a | 74 | S74S | TCc | AGc | 2 | 72952 | All | 0 |
ORF3a | 74 | S74S | tcC | tcT | 45807 | 45807 | AY.4.2 | 0.993493 |
ORF3a | 74 | S74S | tcC | tcT | 6270 | 6281 | AY.4 | 0.009759 |
ORF3a | 74 | S74S | tcC | tcA | 6 | 6281 | AY.4 | 0.000009 |
ORF3a | 74 | S74S | tcC | tcG | 5 | 6281 | AY.4 | 0.000008 |
ORF3a | 74 | S74S | tcC | tcT | 5745 | 5745 | AY.4.2.1 | 0.85593 |
ORF3a | 74 | S74S | tcC | tcT | 4731 | 4731 | B.1.177.4 | 0.998523 |
ORF3a | 74 | S74S | tcC | tcT | 2836 | 2861 | B.1.1.7 | 0.002539 |
ORF3a | 74 | S74S | tcC | tcA | 24 | 2861 | B.1.1.7 | 0.000021 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 2861 | B.1.1.7 | 0.000001 |
ORF3a | 74 | S74S | tcC | tcT | 1372 | 1374 | B.1.617.2 | 0.005166 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 1374 | B.1.617.2 | 0.000004 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 1374 | B.1.617.2 | 0.000004 |
ORF3a | 74 | S74S | tcC | tcT | 653 | 670 | B.1.177 | 0.008598 |
ORF3a | 74 | S74S | tcC | tcG | 14 | 670 | B.1.177 | 0.000184 |
ORF3a | 74 | S74S | tcC | tcA | 3 | 670 | B.1.177 | 0.00004 |
ORF3a | 74 | S74S | tcC | tcT | 391 | 400 | B.1.2 | 0.003443 |
ORF3a | 74 | S74S | tcC | tcA | 6 | 400 | B.1.2 | 0.000053 |
ORF3a | 74 | S74S | tcC | tcG | 3 | 400 | B.1.2 | 0.000026 |
ORF3a | 74 | S74S | tcC | tcT | 328 | 332 | AY.103 | 0.002037 |
ORF3a | 74 | S74S | tcC | tcA | 3 | 332 | AY.103 | 0.000019 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 332 | AY.103 | 0.000006 |
ORF3a | 74 | S74S | tcC | tcT | 320 | 321 | B.1.351 | 0.009512 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 321 | B.1.351 | 0.00003 |
ORF3a | 74 | S74S | tcC | tcT | 252 | 253 | AY.5 | 0.005204 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 253 | AY.5 | 0.000021 |
ORF3a | 74 | S74S | tcC | tcT | 232 | 237 | AY.43 | 0.001028 |
ORF3a | 74 | S74S | tcC | tcA | 3 | 237 | AY.43 | 0.000013 |
ORF3a | 74 | S74S | tcC | tcG | 2 | 237 | AY.43 | 0.000009 |
ORF3a | 74 | S74S | tcC | tcT | 228 | 228 | B.1.1.222 | 0.046512 |
ORF3a | 74 | S74S | tcC | tcT | 213 | 216 | AY.44 | 0.001296 |
ORF3a | 74 | S74S | tcC | tcA | 3 | 216 | AY.44 | 0.000018 |
ORF3a | 74 | S74S | tcC | tcT | 131 | 168 | AY.25 | 0.000788 |
ORF3a | 74 | S74S | tcC | tcA | 36 | 168 | AY.25 | 0.000217 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 168 | AY.25 | 0.000006 |
ORF3a | 74 | S74S | tcC | tcT | 147 | 147 | P.1 | 0.002316 |
ORF3a | 74 | S74S | tcC | tcT | 146 | 146 | B.1.177.18 | 0.169374 |
ORF3a | 74 | S74S | tcC | tcT | 132 | 133 | AY.39 | 0.003262 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 133 | AY.39 | 0.000025 |
ORF3a | 74 | S74S | tcC | tcT | 129 | 129 | B.1.526 | 0.003032 |
ORF3a | 74 | S74S | tcC | tcT | 123 | 128 | B.1 | 0.001127 |
ORF3a | 74 | S74S | tcC | tcA | 4 | 128 | B.1 | 0.000037 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 128 | B.1 | 0.000009 |
ORF3a | 74 | S74S | tcC | tcT | 114 | 114 | B.1.1 | 0.002068 |
ORF3a | 74 | S74S | tcC | tcT | 102 | 113 | AY.3 | 0.001015 |
ORF3a | 74 | S74S | tcC | tcA | 11 | 113 | AY.3 | 0.000109 |
ORF3a | 74 | S74S | tcC | tcT | 108 | 108 | AY.98.1 | 0.005231 |
ORF3a | 74 | S74S | tcC | tcT | 90 | 90 | B.1.351.5 | 0.053957 |
ORF3a | 74 | S74S | tcC | tcT | 76 | 76 | B.1.177.81 | 0.014388 |
ORF3a | 74 | S74S | tcC | tcT | 64 | 64 | B.1.429 | 0.001506 |
ORF3a | 74 | S74S | tcC | tcT | 54 | 56 | AY.23 | 0.003766 |
ORF3a | 74 | S74S | tcC | tcA | 2 | 56 | AY.23 | 0.000139 |
ORF3a | 74 | S74S | tcC | tcT | 47 | 47 | B.1.617.1 | 0.006061 |
ORF3a | 74 | S74S | tcC | tcT | 47 | 47 | C.37 | 0.005455 |
ORF3a | 74 | S74S | tcC | tcT | 45 | 45 | P.1.14 | 0.002151 |
ORF3a | 74 | S74S | tcC | tcT | 41 | 43 | AY.102 | 0.001087 |
ORF3a | 74 | S74S | tcC | tcG | 2 | 43 | AY.102 | 0.000053 |
ORF3a | 74 | S74S | tcC | tcT | 41 | 41 | AY.39.1 | 0.001624 |
ORF3a | 74 | S74S | tcC | tcT | 40 | 41 | B.1.36.8 | 0.04 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 41 | B.1.36.8 | 0.001 |
ORF3a | 74 | S74S | tcC | tcT | 38 | 38 | AY.32 | 0.020234 |
ORF3a | 74 | S74S | tcC | tcT | 36 | 38 | B.1.427 | 0.001818 |
ORF3a | 74 | S74S | tcC | tcA | 2 | 38 | B.1.427 | 0.000101 |
ORF3a | 74 | S74S | tcC | tcT | 35 | 36 | AY.29 | 0.000552 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 36 | AY.29 | 0.000016 |
ORF3a | 74 | S74S | tcC | tcT | 35 | 35 | B.1.258.17 | 0.003639 |
ORF3a | 74 | S74S | tcC | tcT | 34 | 34 | AY.6 | 0.001398 |
ORF3a | 74 | S74S | tcC | tcT | 33 | 33 | B.1.1.519 | 0.00131 |
ORF3a | 74 | S74S | tcC | tcT | 32 | 32 | B.1.221 | 0.002273 |
ORF3a | 74 | S74S | tcC | tcT | 31 | 31 | B.1.243 | 0.002157 |
ORF3a | 74 | S74S | tcC | tcA | 31 | 31 | B.1.542 | 0.96875 |
ORF3a | 74 | S74S | tcC | tcT | 29 | 29 | B.1.36.18 | 0.012185 |
ORF3a | 74 | S74S | tcC | tcT | 25 | 28 | AY.26 | 0.000708 |
ORF3a | 74 | S74S | tcC | tcG | 3 | 28 | AY.26 | 0.000085 |
ORF3a | 74 | S74S | tcC | tcT | 28 | 28 | B.1.438.1 | 0.003003 |
ORF3a | 74 | S74S | tcC | tcT | 25 | 26 | AY.42 | 0.001006 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 26 | AY.42 | 0.00004 |
ORF3a | 74 | S74S | tcC | tcT | 26 | 26 | AY.52 | 0.021173 |
ORF3a | 74 | S74S | tcC | tcT | 26 | 26 | B.1.1.420 | 0.026157 |
ORF3a | 74 | S74S | tcC | tcT | 24 | 24 | B.1.258 | 0.001597 |
ORF3a | 74 | S74S | tcC | tcT | 23 | 23 | B.1.160 | 0.000717 |
ORF3a | 74 | S74S | tcC | tcT | 23 | 23 | B.1.311 | 0.006315 |
ORF3a | 74 | S74S | tcC | tcT | 21 | 21 | B.1.1.189 | 0.03177 |
ORF3a | 74 | S74S | tcC | tcG | 13 | 20 | AY.113 | 0.001851 |
ORF3a | 74 | S74S | tcC | tcT | 7 | 20 | AY.113 | 0.000997 |
ORF3a | 74 | S74S | tcC | tcT | 20 | 20 | B.1.1.157 | 0.018265 |
ORF3a | 74 | S74S | tcC | tcT | 19 | 19 | AY.100 | 0.000874 |
ORF3a | 74 | S74S | tcC | tcT | 19 | 19 | AY.20 | 0.000738 |
ORF3a | 74 | S74S | tcC | tcT | 19 | 19 | AY.46.6 | 0.001372 |
ORF3a | 74 | S74S | tcC | tcT | 19 | 19 | AY.71 | 0.009026 |
ORF3a | 74 | S74S | tcC | tcT | 18 | 18 | AY.119 | 0.000636 |
ORF3a | 74 | S74S | tcC | tcT | 18 | 18 | AY.120.2.1 | 0.008969 |
ORF3a | 74 | S74S | tcC | tcT | 18 | 18 | AY.4.5 | 0.001935 |
ORF3a | 74 | S74S | tcC | tcT | 17 | 17 | AY.116.1 | 0.005294 |
ORF3a | 74 | S74S | tcC | tcT | 17 | 17 | P.2 | 0.003173 |
ORF3a | 74 | S74S | tcC | tcT | 15 | 16 | B.1.525 | 0.001697 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 16 | B.1.525 | 0.000113 |
ORF3a | 74 | S74S | tcC | tcT | 16 | 16 | N.5 | 0.028269 |
ORF3a | 74 | S74S | tcC | tcT | 14 | 15 | AY.120 | 0.000521 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 15 | AY.120 | 0.000037 |
ORF3a | 74 | S74S | tcC | tcT | 15 | 15 | AY.121 | 0.00203 |
ORF3a | 74 | S74S | tcC | tcA | 13 | 15 | AY.27 | 0.000841 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 15 | AY.27 | 0.000129 |
ORF3a | 74 | S74S | tcC | tcT | 15 | 15 | AY.87 | 0.01249 |
ORF3a | 74 | S74S | tcC | tcT | 15 | 15 | B.1.1.434 | 0.005228 |
ORF3a | 74 | S74S | tcC | tcT | 15 | 15 | B.1.177.29 | 1 |
ORF3a | 74 | S74S | tcC | tcT | 14 | 14 | AY.118 | 0.000877 |
ORF3a | 74 | S74S | tcC | tcT | 14 | 14 | AY.46 | 0.001457 |
ORF3a | 74 | S74S | tcC | tcT | 14 | 14 | B.1.36 | 0.002043 |
ORF3a | 74 | S74S | tcC | tcT | 13 | 13 | AY.54 | 0.00124 |
ORF3a | 74 | S74S | tcC | tcT | 13 | 13 | B.1.1.317 | 0.005352 |
ORF3a | 74 | S74S | tcC | tcT | 12 | 13 | B.1.177.21 | 0.000918 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 13 | B.1.177.21 | 0.000076 |
ORF3a | 74 | S74S | tcC | tcT | 9 | 13 | B.1.240 | 0.00194 |
ORF3a | 74 | S74S | tcC | tcG | 4 | 13 | B.1.240 | 0.000862 |
ORF3a | 74 | S74S | tcC | tcT | 13 | 13 | B.1.396 | 0.009174 |
ORF3a | 74 | S74S | tcC | tcT | 13 | 13 | W.4 | 0.017568 |
ORF3a | 74 | S74S | tcC | tcT | 12 | 12 | AY.45 | 0.00146 |
ORF3a | 74 | S74S | tcC | tcT | 11 | 12 | AY.47 | 0.000342 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 12 | AY.47 | 0.000031 |
ORF3a | 74 | S74S | tcC | tcT | 12 | 12 | AY.99.2 | 0.001106 |
ORF3a | 74 | S74S | tcC | tcT | 11 | 11 | AY.110 | 0.00124 |
ORF3a | 74 | S74S | tcC | tcT | 10 | 11 | AY.117 | 0.000845 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 11 | AY.117 | 0.000085 |
ORF3a | 74 | S74S | tcC | tcT | 11 | 11 | AY.16.1 | 0.005169 |
ORF3a | 74 | S74S | tcC | tcT | 11 | 11 | AY.29.1 | 0.002426 |
ORF3a | 74 | S74S | tcC | tcT | 11 | 11 | AY.38 | 0.005492 |
ORF3a | 74 | S74S | tcC | tcT | 11 | 11 | B.1.36.36 | 0.006623 |
ORF3a | 74 | S74S | tcC | tcT | 11 | 11 | B.1.621 | 0.000974 |
ORF3a | 74 | S74S | tcC | tcT | 10 | 10 | AY.75.1 | 0.001803 |
ORF3a | 74 | S74S | tcC | tcT | 10 | 10 | AY.98 | 0.00079 |
ORF3a | 74 | S74S | tcC | tcT | 10 | 10 | B.1.139 | 0.007331 |
ORF3a | 74 | S74S | tcC | tcT | 10 | 10 | B.1.234 | 0.001319 |
ORF3a | 74 | S74S | tcC | tcT | 10 | 10 | P.1.17 | 0.001618 |
ORF3a | 74 | S74S | tcC | tcA | 4 | 9 | 0.222222 | |
ORF3a | 74 | S74S | TCc | AGc | 2 | 9 | 0.111111 | |
ORF3a | 74 | S74S | tcC | tcG | 2 | 9 | 0.111111 | |
ORF3a | 74 | S74S | tcC | tcT | 1 | 9 | 0.055556 | |
ORF3a | 74 | S74S | tcC | tcT | 9 | 9 | AY.9.2 | 0.000331 |
ORF3a | 74 | S74S | tcC | tcT | 8 | 9 | B | 0.001022 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 9 | B | 0.000128 |
ORF3a | 74 | S74S | tcC | tcT | 9 | 9 | B.1.177.12 | 0.001365 |
ORF3a | 74 | S74S | tcC | tcA | 5 | 8 | AY.34 | 0.000485 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 8 | AY.34 | 0.000291 |
ORF3a | 74 | S74S | tcC | tcT | 8 | 8 | AY.53 | 0.0023 |
ORF3a | 74 | S74S | tcC | tcT | 8 | 8 | AY.84 | 0.0035 |
ORF3a | 74 | S74S | tcC | tcT | 7 | 7 | AY.14 | 0.000616 |
ORF3a | 74 | S74S | tcC | tcT | 7 | 7 | AY.30 | 0.00277 |
ORF3a | 74 | S74S | tcC | tcT | 7 | 7 | AY.5.4 | 0.001937 |
ORF3a | 74 | S74S | tcC | tcT | 7 | 7 | AY.86 | 0.005809 |
ORF3a | 74 | S74S | tcC | tcT | 7 | 7 | B.1.404 | 0.009115 |
ORF3a | 74 | S74S | tcC | tcT | 7 | 7 | B.1.568 | 0.007778 |
ORF3a | 74 | S74S | tcC | tcT | 7 | 7 | P.1.1 | 0.002224 |
ORF3a | 74 | S74S | tcC | tcG | 6 | 6 | A | 0.002322 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | AY.13 | 0.000966 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | AY.41 | 0.001764 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | AY.46.2 | 0.003812 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | AY.74 | 0.000694 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | B.1.1.290 | 0.109091 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | B.1.1.33 | 0.002525 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | B.1.1.50 | 0.004073 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | B.1.160.15 | 0.029703 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | B.1.36.27 | 0.00458 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | D.2 | 0.00045 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | P.1.15 | 0.001394 |
ORF3a | 74 | S74S | tcC | tcT | 6 | 6 | Q.8 | 0.000989 |
ORF3a | 74 | S74S | tcC | tcT | 5 | 5 | AY.33 | 0.000334 |
ORF3a | 74 | S74S | tcC | tcT | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 74 | S74S | tcC | tcT | 5 | 5 | AY.61 | 0.000524 |
ORF3a | 74 | S74S | tcC | tcT | 5 | 5 | B.1.1.132 | 0.074627 |
ORF3a | 74 | S74S | tcC | tcT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF3a | 74 | S74S | tcC | tcT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF3a | 74 | S74S | tcC | tcT | 5 | 5 | B.1.637 | 0.000365 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | AY.120.1 | 0.001284 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | AY.36 | 0.000593 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | AY.59 | 0.002119 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | AY.63 | 0.001547 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | AY.7.1 | 0.000451 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | AY.7.2 | 0.002237 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 4 | AY.75 | 0.000168 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 4 | AY.75 | 0.000056 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | AY.85 | 0.001709 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | AY.91 | 0.002922 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | B.1.1.344 | 0.043011 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | B.1.111 | 0.0047 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | B.1.232 | 0.002149 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | B.1.459 | 0.016327 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | B.1.558 | 0.018265 |
ORF3a | 74 | S74S | tcC | tcG | 4 | 4 | B.1.575 | 0.001214 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | B.1.588 | 0.00364 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | B.1.595 | 0.001044 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | B.1.596 | 0.000349 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | P.1.2 | 0.004624 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | P.3 | 0.00638 |
ORF3a | 74 | S74S | tcC | tcT | 4 | 4 | Q.1 | 0.000505 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AD.2 | 0.000657 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.106 | 0.001005 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.111 | 0.000549 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.39.2 | 0.004622 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.40 | 0.002893 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.46.1 | 0.00308 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.62 | 0.001307 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.66 | 0.003209 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.68 | 0.000821 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.88 | 0.002653 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.93 | 0.000819 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | AY.95 | 0.002283 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.1.416 | 0.002715 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.160.32 | 0.012876 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.36.22 | 0.003623 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.398 | 0.008929 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.462 | 0.021739 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | B.1.597 | 0.013889 |
ORF3a | 74 | S74S | tcC | tcT | 3 | 3 | C.37.1 | 0.007853 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | A.28 | 0.005291 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AE.8 | 0.000978 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AU.2 | 0.004843 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AY.19 | 0.002281 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AY.51 | 0.001818 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AY.73 | 0.001331 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | AY.99 | 0.002099 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.1.305 | 0.007722 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.1.354 | 0.008772 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.1.368 | 0.006173 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.146 | 0.008475 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.306 | 0.011429 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.349 | 0.00143 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 2 | B.1.36.29 | 0.000517 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 2 | B.1.36.29 | 0.000517 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.509 | 0.001732 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.582 | 0.000981 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.612 | 0.005305 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.619 | 0.001742 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.623 | 0.001073 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.627 | 0.00404 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.1.93 | 0.001867 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.3.1 | 0.003317 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | B.4 | 0.004415 |
ORF3a | 74 | S74S | tcC | tcT | 2 | 2 | C.16 | 0.002121 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | A.1 | 0.000282 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | A.2 | 0.000662 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | A.23 | 0.010526 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | A.25 | 0.018182 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | A.6 | 0.005128 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AU.3 | 0.00211 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.50 | 0.000799 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.57 | 0.000656 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.80 | 0.001129 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.91.1 | 0.004065 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | AZ.2 | 0.000821 |
ORF3a | 74 | S74S | tcC | tcG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.190 | 0.05 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.234 | 0.012048 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.320 | 0.018182 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.335 | 0.012987 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.355 | 0.015385 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.396 | 0.045455 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.428 | 0.009434 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.59 | 0.006494 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.131 | 0.008772 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 1 | B.1.160.14 | 0.002119 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.211 | 0.025 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.22 | 0.001318 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.237 | 0.004975 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.258.9 | 0.005 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.279 | 0.000514 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.305 | 0.002151 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.338 | 0.008621 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.36.23 | 0.016393 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.36.7 | 0.004 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.403 | 0.003268 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.505 | 0.004386 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.530 | 0.007143 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.544 | 0.006024 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.547 | 0.02439 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.548 | 0.035714 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.550 | 0.013699 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 74 | S74S | tcC | tcA | 1 | 1 | B.1.636 | 0.006711 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.38 | 0.02381 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.39 | 0.002331 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | B.6.8 | 0.008264 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | C.14 | 0.004329 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | C.30 | 0.001727 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | C.36.2 | 0.034483 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | L.3 | 0.003546 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | N.1 | 0.016949 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | P.1.3 | 0.034483 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | P.1.4 | 0.000977 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | P.1.8 | 0.004785 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | P.7 | 0.004367 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | Q.2 | 0.000613 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | Q.7 | 0.001111 |
ORF3a | 74 | S74S | tcC | tcT | 1 | 1 | R.1 | 0.00009 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|