CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = S60S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a60S60SsyntcCtcT781170020.89642825570-25572
ORF3a60S60SsyntcCtcA78117840.10037125570-25572
ORF3a60S60SsyntcCtcG7811250.0032006125570-25572

Details of the mutation S60S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a60S60StcCtcT70027811All0.001339
ORF3a60S60StcCtcA7847811All0.00015
ORF3a60S60StcCtcG257811All0.000005
ORF3a60S60StcCtcT25752677B.1.1.70.002305
ORF3a60S60StcCtcA852677B.1.1.70.000076
ORF3a60S60StcCtcG172677B.1.1.70.000015
ORF3a60S60StcCtcT648712B.1.617.20.00244
ORF3a60S60StcCtcA64712B.1.617.20.000241
ORF3a60S60StcCtcT385399AY.430.001706
ORF3a60S60StcCtcA13399AY.430.000058
ORF3a60S60StcCtcG1399AY.430.000004
ORF3a60S60StcCtcT392392AY.5.20.965517
ORF3a60S60StcCtcT376376AY.480.174884
ORF3a60S60StcCtcT274314B.1.4290.006447
ORF3a60S60StcCtcA40314B.1.4290.000941
ORF3a60S60StcCtcA292294AY.610.030595
ORF3a60S60StcCtcT2294AY.610.00021
ORF3a60S60StcCtcT192220AY.40.000299
ORF3a60S60StcCtcA27220AY.40.000042
ORF3a60S60StcCtcG1220AY.40.000002
ORF3a60S60StcCtcT172173B.1.1600.005364
ORF3a60S60StcCtcA1173B.1.1600.000031
ORF3a60S60StcCtcT143144B.1.1770.001883
ORF3a60S60StcCtcA1144B.1.1770.000013
ORF3a60S60StcCtcA100137AY.1030.000621
ORF3a60S60StcCtcT36137AY.1030.000224
ORF3a60S60StcCtcG1137AY.1030.000006
ORF3a60S60StcCtcT125125B.350.976562
ORF3a60S60StcCtcT116116B.1.3381
ORF3a60S60StcCtcT9092AY.39.10.003565
ORF3a60S60StcCtcA292AY.39.10.000079
ORF3a60S60StcCtcT8484AH.30.319392
ORF3a60S60StcCtcT7079AY.440.000426
ORF3a60S60StcCtcA979AY.440.000055
ORF3a60S60StcCtcT6177B.1.20.000537
ORF3a60S60StcCtcA1677B.1.20.000141
ORF3a60S60StcCtcT6161B.1.2430.004245
ORF3a60S60StcCtcT4654B.10.000421
ORF3a60S60StcCtcA854B.10.000073
ORF3a60S60StcCtcT4952P.10.000772
ORF3a60S60StcCtcA352P.10.000047
ORF3a60S60StcCtcT5050B.1.177.860.009173
ORF3a60S60StcCtcT4246AY.250.000253
ORF3a60S60StcCtcA446AY.250.000024
ORF3a60S60StcCtcT4343B.1.36.290.022245
ORF3a60S60StcCtcT3740B.1.10.000671
ORF3a60S60StcCtcA340B.1.10.000054
ORF3a60S60StcCtcT3538AY.1020.000928
ORF3a60S60StcCtcA338AY.1020.00008
ORF3a60S60StcCtcT3838B.1.1.3110.01361
ORF3a60S60StcCtcT3436B.1.2210.002415
ORF3a60S60StcCtcA236B.1.2210.000142
ORF3a60S60StcCtcT3535B.1.564.10.055205
ORF3a60S60StcCtcT3132AY.320.016507
ORF3a60S60StcCtcA132AY.320.000532
ORF3a60S60StcCtcT2729AY.390.000667
ORF3a60S60StcCtcA229AY.390.000049
ORF3a60S60StcCtcT2426B.1.3510.000713
ORF3a60S60StcCtcA226B.1.3510.000059
ORF3a60S60StcCtcT2525B.1.438.10.002682
ORF3a60S60StcCtcT2023AY.200.000777
ORF3a60S60StcCtcA323AY.200.000117
ORF3a60S60StcCtcT2021B.1.2580.001331
ORF3a60S60StcCtcA121B.1.2580.000067
ORF3a60S60StcCtcT2020B.1.1.4870.111732
ORF3a60S60StcCtcT1519B.1.5260.000353
ORF3a60S60StcCtcA419B.1.5260.000094
ORF3a60S60StcCtcT1717B.1.2400.003665
ORF3a60S60StcCtcT1617B.1.6210.001416
ORF3a60S60StcCtcA117B.1.6210.000089
ORF3a60S60StcCtcT1216AY.30.000119
ORF3a60S60StcCtcA416AY.30.00004
ORF3a60S60StcCtcT1216AY.470.000373
ORF3a60S60StcCtcA416AY.470.000124
ORF3a60S60StcCtcT1016AY.630.003868
ORF3a60S60StcCtcA616AY.630.002321
ORF3a60S60StcCtcT1515C.360.013661
ORF3a60S60StcCtcT1214AY.260.00034
ORF3a60S60StcCtcA214AY.260.000057
ORF3a60S60StcCtcT1414B.1.5610.005558
ORF3a60S60StcCtcT1213B.1.6370.000877
ORF3a60S60StcCtcA113B.1.6370.000073
ORF3a60S60StcCtcT1113C.370.001277
ORF3a60S60StcCtcA213C.370.000232
ORF3a60S60StcCtcT1112B.1.4270.000555
ORF3a60S60StcCtcA112B.1.4270.00005
ORF3a60S60StcCtcT811B.1.360.001167
ORF3a60S60StcCtcA311B.1.360.000438
ORF3a60S60StcCtcA610AY.350.001398
ORF3a60S60StcCtcT410AY.350.000932
ORF3a60S60StcCtcT910D.20.000675
ORF3a60S60StcCtcA110D.20.000075
ORF3a60S60StcCtcA910N.50.015901
ORF3a60S60StcCtcT110N.50.001767
ORF3a60S60StcCtcT99AY.230.000628
ORF3a60S60StcCtcT79AY.290.00011
ORF3a60S60StcCtcA29AY.290.000032
ORF3a60S60StcCtcT99AY.570.005906
ORF3a60S60StcCtcT99B.1.36.210.019438
ORF3a60S60StcCtcT89B.1.5250.000905
ORF3a60S60StcCtcA19B.1.5250.000113
ORF3a60S60StcCtcT88AY.460.000833
ORF3a60S60StcCtcT88AY.46.60.000578
ORF3a60S60StcCtcT88AY.620.003486
ORF3a60S60StcCtcT88AY.750.000448
ORF3a60S60StcCtcT88B.1.1.5190.000318
ORF3a60S60StcCtcT88B.1.351.20.002421
ORF3a60S60StcCtcA88B.1.4000.003432
ORF3a60S60StcCtcT88B.1.5680.008889
ORF3a60S60StcCtcT88B.1.5950.002088
ORF3a60S60StcCtcT88B.1.6280.002819
ORF3a60S60StcCtcT77B.1.5880.006369
ORF3a60S60StcCtcT77Q.80.001154
ORF3a60S60StcCtcT56AY.4.20.000108
ORF3a60S60StcCtcA16AY.4.20.000022
ORF3a60S60StcCtcT66B.1.440.05
ORF3a60S60StcCtcA55A.2.5.10.024038
ORF3a60S60StcCtcT55AY.1000.00023
ORF3a60S60StcCtcT55AY.1170.000423
ORF3a60S60StcCtcT45AY.1200.000149
ORF3a60S60StcCtcA15AY.1200.000037
ORF3a60S60StcCtcT45AY.330.000267
ORF3a60S60StcCtcA15AY.330.000067
ORF3a60S60StcCtcT55AY.580.004537
ORF3a60S60StcCtcA35AY.98.10.000145
ORF3a60S60StcCtcT25AY.98.10.000097
ORF3a60S60StcCtcT55B.1.1.1580.060976
ORF3a60S60StcCtcT55B.1.1.2850.03268
ORF3a60S60StcCtcT55B.60.00455
ORF3a60S60StcCtcG240.111111
ORF3a60S60StcCtcA240.111111
ORF3a60S60StcCtcT44AY.34.10.00204
ORF3a60S60StcCtcT44AY.5.40.001107
ORF3a60S60StcCtcT44AY.9.10.000335
ORF3a60S60StcCtcT44AY.99.20.000369
ORF3a60S60StcCtcT44B.1.1.1700.004988
ORF3a60S60StcCtcT44B.1.1.2140.000222
ORF3a60S60StcCtcT44B.1.1.2220.000816
ORF3a60S60StcCtcT44B.1.1.280.001245
ORF3a60S60StcCtcT44B.1.1.700.001364
ORF3a60S60StcCtcT44B.1.177.540.002426
ORF3a60S60StcCtcT44B.1.214.20.002398
ORF3a60S60StcCtcT44B.1.258.170.000416
ORF3a60S60StcCtcT34B.1.36.180.001261
ORF3a60S60StcCtcA14B.1.36.180.00042
ORF3a60S60StcCtcT44B.1.4620.028986
ORF3a60S60StcCtcT44B.1.4980.081633
ORF3a60S60StcCtcT34B.1.5960.000261
ORF3a60S60StcCtcA14B.1.5960.000087
ORF3a60S60StcCtcG24B.1.617.10.000258
ORF3a60S60StcCtcT24B.1.617.10.000258
ORF3a60S60StcCtcT44C.140.017316
ORF3a60S60StcCtcA44C.380.032258
ORF3a60S60StcCtcT44P.1.70.001277
ORF3a60S60StcCtcT44W.40.005405
ORF3a60S60StcCtcT33A.290.015957
ORF3a60S60StcCtcT33AL.10.038961
ORF3a60S60StcCtcA23AY.1050.001286
ORF3a60S60StcCtcT13AY.1050.000643
ORF3a60S60StcCtcA23AY.140.000176
ORF3a60S60StcCtcT13AY.140.000088
ORF3a60S60StcCtcA33AY.300.001187
ORF3a60S60StcCtcT23AY.50.000041
ORF3a60S60StcCtcA13AY.50.000021
ORF3a60S60StcCtcT33AY.840.001312
ORF3a60S60StcCtcT33B.1.1.10.00098
ORF3a60S60StcCtcT33B.1.1.2160.002671
ORF3a60S60StcCtcT33B.1.1.330.001263
ORF3a60S60StcCtcA33B.1.177.330.004934
ORF3a60S60StcCtcT23B.1.177.810.000379
ORF3a60S60StcCtcA13B.1.177.810.000189
ORF3a60S60StcCtcT33B.1.3670.002377
ORF3a60S60StcCtcT33B.1.6200.002838
ORF3a60S60StcCtcT23P.1.120.000968
ORF3a60S60StcCtcA13P.1.120.000484
ORF3a60S60StcCtcT33Q.30.000435
ORF3a60S60StcCtcT22AY.1100.000225
ORF3a60S60StcCtcT22AY.1130.000285
ORF3a60S60StcCtcT22AY.1160.000574
ORF3a60S60StcCtcT22AY.160.000759
ORF3a60S60StcCtcT22AY.240.000862
ORF3a60S60StcCtcT12AY.380.000499
ORF3a60S60StcCtcA12AY.380.000499
ORF3a60S60StcCtcT22AY.450.000243
ORF3a60S60StcCtcT22AY.46.50.000397
ORF3a60S60StcCtcT22AY.5.30.000675
ORF3a60S60StcCtcT22AY.540.000191
ORF3a60S60StcCtcT22AY.650.001066
ORF3a60S60StcCtcA12AY.740.000116
ORF3a60S60StcCtcT12AY.740.000116
ORF3a60S60StcCtcT22AY.75.10.000361
ORF3a60S60StcCtcT22AY.910.001461
ORF3a60S60StcCtcT22AY.930.000546
ORF3a60S60StcCtcT22AY.980.000158
ORF3a60S60StcCtcG12AY.990.001049
ORF3a60S60StcCtcT12AY.990.001049
ORF3a60S60StcCtcT22AZ.50.007018
ORF3a60S60StcCtcT22B0.000256
ORF3a60S60StcCtcT22B.1.1.4340.000697
ORF3a60S60StcCtcT22B.1.1.500.001358
ORF3a60S60StcCtcT22B.1.1.890.012121
ORF3a60S60StcCtcT22B.1.177.40.000422
ORF3a60S60StcCtcT22B.1.1990.008264
ORF3a60S60StcCtcT22B.1.2320.001075
ORF3a60S60StcCtcT22B.1.3050.004301
ORF3a60S60StcCtcT22B.1.3110.000549
ORF3a60S60StcCtcT22B.1.4160.002538
ORF3a60S60StcCtcT22B.1.4970.00063
ORF3a60S60StcCtcT22B.1.4990.002101
ORF3a60S60StcCtcT22B.1.5750.000607
ORF3a60S60StcCtcT12C.36.10.004149
ORF3a60S60StcCtcA12C.36.10.004149
ORF3a60S60StcCtcT12P.1.140.000048
ORF3a60S60StcCtcA12P.1.140.000048
ORF3a60S60StcCtcT22P.1.40.001953
ORF3a60S60StcCtcT22P.20.000373
ORF3a60S60StcCtcT11A0.000387
ORF3a60S60StcCtcT11A.20.000662
ORF3a60S60StcCtcT11A.2.20.001689
ORF3a60S60StcCtcT11A.2.5.20.001572
ORF3a60S60StcCtcT11AY.1090.00074
ORF3a60S60StcCtcT11AY.1110.000183
ORF3a60S60StcCtcT11AY.1180.000063
ORF3a60S60StcCtcT11AY.1190.000035
ORF3a60S60StcCtcT11AY.120.10.000321
ORF3a60S60StcCtcT11AY.130.000161
ORF3a60S60StcCtcT11AY.270.000065
ORF3a60S60StcCtcT11AY.340.000097
ORF3a60S60StcCtcT11AY.370.000316
ORF3a60S60StcCtcT11AY.39.20.001541
ORF3a60S60StcCtcT11AY.4.2.10.000149
ORF3a60S60StcCtcT11AY.4.50.000107
ORF3a60S60StcCtcT11AY.400.000964
ORF3a60S60StcCtcT11AY.410.000294
ORF3a60S60StcCtcT11AY.420.00004
ORF3a60S60StcCtcT11AY.510.000909
ORF3a60S60StcCtcT11AY.530.000288
ORF3a60S60StcCtcT11AY.670.000464
ORF3a60S60StcCtcT11AY.690.000187
ORF3a60S60StcCtcT11AY.800.001129
ORF3a60S60StcCtcT11AY.9.20.000037
ORF3a60S60StcCtcT11AY.950.000761
ORF3a60S60StcCtcT11AY.99.10.001553
ORF3a60S60StcCtcT11AZ.10.000867
ORF3a60S60StcCtcT11AZ.20.000821
ORF3a60S60StcCtcT11AZ.30.00152
ORF3a60S60StcCtcT11B.1.1.100.001115
ORF3a60S60StcCtcA11B.1.1.1210.002427
ORF3a60S60StcCtcT11B.1.1.1330.008475
ORF3a60S60StcCtcT11B.1.1.1360.021277
ORF3a60S60StcCtcT11B.1.1.1480.008772
ORF3a60S60StcCtcT11B.1.1.1520.04
ORF3a60S60StcCtcT11B.1.1.1890.001513
ORF3a60S60StcCtcT11B.1.1.2040.00304
ORF3a60S60StcCtcT11B.1.1.2070.001182
ORF3a60S60StcCtcT11B.1.1.2200.001859
ORF3a60S60StcCtcT11B.1.1.2410.00207
ORF3a60S60StcCtcT11B.1.1.250.000569
ORF3a60S60StcCtcT11B.1.1.2770.000759
ORF3a60S60StcCtcT11B.1.1.2940.001266
ORF3a60S60StcCtcT11B.1.1.2980.000862
ORF3a60S60StcCtcT11B.1.1.3060.000438
ORF3a60S60StcCtcA11B.1.1.3170.000412
ORF3a60S60StcCtcT11B.1.1.3180.000302
ORF3a60S60StcCtcT11B.1.1.3280.016949
ORF3a60S60StcCtcT11B.1.1.3320.03125
ORF3a60S60StcCtcA11B.1.1.3690.000446
ORF3a60S60StcCtcT11B.1.1.3720.000689
ORF3a60S60StcCtcT11B.1.1.3730.02381
ORF3a60S60StcCtcT11B.1.1.390.00051
ORF3a60S60StcCtcT11B.1.1.4350.034483
ORF3a60S60StcCtcT11B.1.1.4480.002033
ORF3a60S60StcCtcT11B.1.1.470.005348
ORF3a60S60StcCtcT11B.1.1.630.000386
ORF3a60S60StcCtcT11B.1.1620.005025
ORF3a60S60StcCtcT11B.1.177.100.000878
ORF3a60S60StcCtcT11B.1.177.120.000152
ORF3a60S60StcCtcT11B.1.177.420.000894
ORF3a60S60StcCtcT11B.1.177.50.001242
ORF3a60S60StcCtcT11B.1.177.550.002331
ORF3a60S60StcCtcA11B.1.177.560.000668
ORF3a60S60StcCtcT11B.1.177.570.000281
ORF3a60S60StcCtcA11B.1.177.670.007634
ORF3a60S60StcCtcT11B.1.177.70.000165
ORF3a60S60StcCtcT11B.1.177.720.00339
ORF3a60S60StcCtcT11B.1.177.770.000726
ORF3a60S60StcCtcT11B.1.177.790.002342
ORF3a60S60StcCtcT11B.1.2410.000812
ORF3a60S60StcCtcT11B.1.258.110.000396
ORF3a60S60StcCtcT11B.1.3460.001311
ORF3a60S60StcCtcT11B.1.3490.000715
ORF3a60S60StcCtcT11B.1.351.30.000876
ORF3a60S60StcCtcA11B.1.36.100.004785
ORF3a60S60StcCtcT11B.1.36.120.009615
ORF3a60S60StcCtcT11B.1.36.310.001751
ORF3a60S60StcCtcT11B.1.3610.001289
ORF3a60S60StcCtcT11B.1.3690.000285
ORF3a60S60StcCtcT11B.1.3960.000706
ORF3a60S60StcCtcA11B.1.3980.002976
ORF3a60S60StcCtcT11B.1.3990.001934
ORF3a60S60StcCtcT11B.1.4320.011236
ORF3a60S60StcCtcA11B.1.4500.011364
ORF3a60S60StcCtcT11B.1.4590.004082
ORF3a60S60StcCtcT11B.1.466.20.000391
ORF3a60S60StcCtcT11B.1.5640.000426
ORF3a60S60StcCtcT11B.1.5930.01087
ORF3a60S60StcCtcT11B.1.6090.000479
ORF3a60S60StcCtcT11B.1.90.006173
ORF3a60S60StcCtcA11B.100.008264
ORF3a60S60StcCtcT11B.400.000364
ORF3a60S60StcCtcA11B.600.015873
ORF3a60S60StcCtcT11C.160.00106
ORF3a60S60StcCtcT11C.30.10.006711
ORF3a60S60StcCtcT11P.1.100.000269
ORF3a60S60StcCtcT11Q.10.000126
ORF3a60S60StcCtcA11Q.40.000455
ORF3a60S60StcCtcT11R.10.00009