CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = S40L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a40S40LnonsyntCatTa794979450.99949725510-25512
ORF3a40S40LnonsyntCAtTG794930.00037740625510-25512
ORF3a40S40LnonsynTCaCTa794910.00012580225510-25512

Details of the mutation S40L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a40S40LtCatTa79457949All0.00152
ORF3a40S40LtCAtTG37949All0.000001
ORF3a40S40LTCaCTa17949All0
ORF3a40S40LtCatTa21232123B.1.1.70.001901
ORF3a40S40LtCatTa746746AY.40.001161
ORF3a40S40LtCatTa594594B.10.005441
ORF3a40S40LtCatTa362362P.1.140.017304
ORF3a40S40LtCatTa357357AY.440.002173
ORF3a40S40LtCatTa263263AY.430.001165
ORF3a40S40LtCatTa219220B.1.617.20.000825
ORF3a40S40LTCaCTa1220B.1.617.20.000004
ORF3a40S40LtCatTa186186B.1.20.001638
ORF3a40S40LtCatTa172172B.1.6260.982857
ORF3a40S40LtCatTa161161AY.1030.001
ORF3a40S40LtCatTa147147B.1.1770.001936
ORF3a40S40LtCatTa133133AY.250.0008
ORF3a40S40LtCatTa121121AY.46.40.019905
ORF3a40S40LtCatTa101101B.1.258.170.010501
ORF3a40S40LtCatTa9698B.1.4290.002259
ORF3a40S40LtCAtTG298B.1.4290.000047
ORF3a40S40LtCatTa9292B.1.5250.010411
ORF3a40S40LtCatTa8383B.1.2580.005523
ORF3a40S40LtCatTa7171AY.30.000706
ORF3a40S40LtCatTa7171P.10.001119
ORF3a40S40LtCatTa6565B.1.1.1700.081047
ORF3a40S40LtCatTa5858C.40.58
ORF3a40S40LtCatTa5757AY.7.20.031879
ORF3a40S40LtCatTa5454B.1.258.140.052941
ORF3a40S40LtCatTa4848B.1.10.000871
ORF3a40S40LtCatTa4343B.1.3041
ORF3a40S40LtCatTa4141B.1.5260.000964
ORF3a40S40LtCatTa3939B.1.2430.002714
ORF3a40S40LtCatTa3737AY.460.003851
ORF3a40S40LtCatTa3737B.1.1.5190.001469
ORF3a40S40LtCatTa3636AY.290.000568
ORF3a40S40LtCatTa3434AY.390.00084
ORF3a40S40LtCatTa3434AY.450.004137
ORF3a40S40LtCatTa3333B.1.3460.04325
ORF3a40S40LtCatTa3333B.1.3510.000981
ORF3a40S40LtCatTa3131B.1.438.10.003325
ORF3a40S40LtCatTa3030AY.1020.000795
ORF3a40S40LtCatTa3030B.1.1.4340.010457
ORF3a40S40LtCatTa2828B.1.1.2790.03139
ORF3a40S40LtCatTa2727AY.4.20.000586
ORF3a40S40LtCatTa2727B.1.4270.001363
ORF3a40S40LtCatTa2525B.1.1600.00078
ORF3a40S40LtCatTa2020AY.330.001336
ORF3a40S40LtCatTa2020P.1.150.004647
ORF3a40S40LtCatTa1818AY.470.00056
ORF3a40S40LtCatTa1818AY.610.001886
ORF3a40S40LtCatTa1818B.1.6380.947368
ORF3a40S40LtCatTa1717AY.200.000661
ORF3a40S40LtCatTa1717AY.230.001186
ORF3a40S40LtCatTa1717AY.270.0011
ORF3a40S40LtCatTa1717AY.4.2.10.002533
ORF3a40S40LtCatTa1616AY.50.00033
ORF3a40S40LtCatTa1616B.1.1.980.296296
ORF3a40S40LtCatTa1515B.1.36.180.006303
ORF3a40S40LtCatTa1515P.1.120.00726
ORF3a40S40LtCatTa1414B.1.4250.041916
ORF3a40S40LtCatTa1414B.1.6210.001239
ORF3a40S40LtCatTa1313AY.1000.000598
ORF3a40S40LtCatTa1313AY.1130.001851
ORF3a40S40LtCatTa1313B.1.1.460.056769
ORF3a40S40LtCatTa1212AY.1210.001624
ORF3a40S40LtCatTa1212B0.001534
ORF3a40S40LtCatTa1212B.1.1.280.003735
ORF3a40S40LtCatTa1212B.1.177.20.054545
ORF3a40S40LtCatTa1111AY.1110.002015
ORF3a40S40LtCatTa1111B.1.1.3740.026128
ORF3a40S40LtCatTa1111P.20.002053
ORF3a40S40LtCatTa1010AY.1180.000626
ORF3a40S40LtCatTa1010D.20.00075
ORF3a40S40LtCatTa99AY.540.000858
ORF3a40S40LtCatTa99AY.99.20.000829
ORF3a40S40LtCatTa99B.1.2210.000639
ORF3a40S40LtCatTa99B.1.36.290.004656
ORF3a40S40LtCatTa99B.1.5960.000784
ORF3a40S40LtCatTa99R.10.00081
ORF3a40S40LtCatTa88AY.260.000226
ORF3a40S40LtCatTa88AY.4.30.006734
ORF3a40S40LtCatTa88AY.9.10.00067
ORF3a40S40LtCatTa88AY.9.20.000294
ORF3a40S40LtCatTa88B.1.214.20.004796
ORF3a40S40LtCatTa77AY.1090.005178
ORF3a40S40LtCatTa77AY.1170.000592
ORF3a40S40LtCatTa77AY.140.000616
ORF3a40S40LtCatTa77AY.360.001037
ORF3a40S40LtCatTa77AY.46.60.000505
ORF3a40S40LtCatTa77B.1.177.410.0175
ORF3a40S40LtCatTa77B.1.177.690.010386
ORF3a40S40LtCatTa77B.1.36.10.007982
ORF3a40S40LtCatTa77B.1.4700.009831
ORF3a40S40LtCatTa77B.1.617.10.000903
ORF3a40S40LtCatTa77B.6.60.006222
ORF3a40S40LtCatTa77Q.80.001154
ORF3a40S40LtCatTa66AY.1200.000223
ORF3a40S40LtCatTa66AY.3.10.000512
ORF3a40S40LtCatTa66AY.680.001642
ORF3a40S40LtCatTa66B.1.1.1210.014563
ORF3a40S40LtCatTa66B.1.177.70.000989
ORF3a40S40LtCatTa66B.1.177.810.001136
ORF3a40S40LtCatTa66B.1.3690.001711
ORF3a40S40LtCatTa66B.1.3910.006764
ORF3a40S40LtCatTa66B.1.4160.007614
ORF3a40S40LtCatTa66C.300.010363
ORF3a40S40LtCatTa55AY.620.002179
ORF3a40S40LtCatTa55B.1.1.10.001633
ORF3a40S40LtCatTa55B.1.177.210.000382
ORF3a40S40LtCatTa55B.1.177.440.002595
ORF3a40S40LtCatTa55B.1.2410.004058
ORF3a40S40LtCatTa55B.1.3350.051546
ORF3a40S40LtCatTa55B.1.360.00073
ORF3a40S40LtCatTa55C.370.00058
ORF3a40S40LtCatTa44AY.1050.002572
ORF3a40S40LtCatTa44AY.1190.000141
ORF3a40S40LtCatTa44AY.39.10.000158
ORF3a40S40LtCatTa44AY.46.50.000794
ORF3a40S40LtCatTa44AY.7.10.000451
ORF3a40S40LtCatTa44AY.750.000224
ORF3a40S40LtCatTa44AY.980.000316
ORF3a40S40LtCatTa44B.1.1.2160.003562
ORF3a40S40LtCatTa44B.1.1.330.001684
ORF3a40S40LtCatTa44B.1.1.3720.002755
ORF3a40S40LtCatTa44B.1.1.4560.222222
ORF3a40S40LtCatTa44B.1.177.860.000734
ORF3a40S40LtCatTa44B.1.3060.022857
ORF3a40S40LtCatTa44B.1.3110.001098
ORF3a40S40LtCatTa44B.1.466.20.001565
ORF3a40S40LtCatTa44C.36.30.002269
ORF3a40S40LtCatTa44Q.10.000505
ORF3a40S40LtCatTa33AY.16.10.00141
ORF3a40S40LtCatTa33AY.340.000291
ORF3a40S40LtCatTa33AY.370.000948
ORF3a40S40LtCatTa33AY.4.50.000322
ORF3a40S40LtCatTa33AY.420.000121
ORF3a40S40LtCatTa33AY.5.30.001012
ORF3a40S40LtCatTa33AY.850.001282
ORF3a40S40LtCatTa33AY.930.000819
ORF3a40S40LtCatTa33AY.960.006224
ORF3a40S40LtCatTa33AY.98.10.000145
ORF3a40S40LtCatTa33B.1.1.3480.002389
ORF3a40S40LtCatTa33B.1.1.4160.002715
ORF3a40S40LtCatTa33B.1.177.200.004552
ORF3a40S40LtCatTa33B.1.3670.002377
ORF3a40S40LtCatTa33B.1.3750.002459
ORF3a40S40LtCatTa33B.1.5820.001472
ORF3a40S40LtCatTa33B.1.5950.000783
ORF3a40S40LtCatTa33B.1.6090.001438
ORF3a40S40LtCatTa33B.1.6230.001609
ORF3a40S40LtCatTa33B.1.6370.000219
ORF3a40S40LtCatTa33B.520.030303
ORF3a40S40LtCatTa33C.110.031915
ORF3a40S40LtCatTa33P.1.10.000953
ORF3a40S40LtCatTa22A.2.20.003378
ORF3a40S40LtCatTa22A.230.021053
ORF3a40S40LtCatTa22AY.1010.000981
ORF3a40S40LtCatTa22AY.1100.000225
ORF3a40S40LtCatTa22AY.116.10.000623
ORF3a40S40LtCatTa22AY.120.10.000642
ORF3a40S40LtCatTa22AY.130.000322
ORF3a40S40LtCatTa22AY.20.000712
ORF3a40S40LtCatTa22AY.4.40.000818
ORF3a40S40LtCatTa22AY.60.000082
ORF3a40S40LtCatTa22AY.640.00119
ORF3a40S40LtCatTa22AY.75.10.000361
ORF3a40S40LtCatTa22AY.800.002257
ORF3a40S40LtCatTa22AY.840.000875
ORF3a40S40LtCatTa22AY.920.000575
ORF3a40S40LtCatTa22B.1.1.1530.002191
ORF3a40S40LtCatTa22B.1.1.2310.006192
ORF3a40S40LtCatTa22B.1.1.2840.000215
ORF3a40S40LtCatTa22B.1.1.3060.000877
ORF3a40S40LtCatTa22B.1.1.3180.000604
ORF3a40S40LtCatTa22B.1.1.4030.051282
ORF3a40S40LtCatTa22B.1.1.500.001358
ORF3a40S40LtCatTa22B.1.1.5210.010695
ORF3a40S40LtCatTa22B.1.177.620.002384
ORF3a40S40LtCatTa22B.1.177.750.002081
ORF3a40S40LtCatTa22B.1.2340.000264
ORF3a40S40LtCatTa22B.1.4280.002041
ORF3a40S40LtCatTa22B.1.4690.00722
ORF3a40S40LtCatTa22B.1.4800.004975
ORF3a40S40LtCatTa22B.1.5870.003795
ORF3a40S40LtCatTa22B.1.5970.009259
ORF3a40S40LtCatTa22B.1.6190.001742
ORF3a40S40LtCatTa22B.1.6280.000705
ORF3a40S40LtCatTa22B.1.6390.043478
ORF3a40S40LtCatTa22B.550.0059
ORF3a40S40LtCatTa22L.30.007092
ORF3a40S40LtCatTa22P.1.17.10.00175
ORF3a40S40LtCatTa22P.1.70.000639
ORF3a40S40LtCatTa22Q.30.00029
ORF3a40S40LtCatTa11A0.000387
ORF3a40S40LtCatTa11A.10.000282
ORF3a40S40LtCatTa11A.2.5.20.001572
ORF3a40S40LtCatTa11A.270.001656
ORF3a40S40LtCatTa11AE.80.000489
ORF3a40S40LtCatTa11AY.1070.000466
ORF3a40S40LtCatTa11AY.1140.000231
ORF3a40S40LtCatTa11AY.1160.000287
ORF3a40S40LtCatTa11AY.160.00038
ORF3a40S40LtCatTa11AY.210.001898
ORF3a40S40LtCatTa11AY.23.10.000417
ORF3a40S40LtCatTa11AY.240.000431
ORF3a40S40LtCatTa11AY.280.00189
ORF3a40S40LtCatTa11AY.300.000396
ORF3a40S40LtCatTa11AY.34.10.00051
ORF3a40S40LtCatTa11AY.380.000499
ORF3a40S40LtCatTa11AY.410.000294
ORF3a40S40LtCatTa11AY.5.40.000277
ORF3a40S40LtCatTa11AY.570.000656
ORF3a40S40LtCatTa11AY.590.00053
ORF3a40S40LtCatTa11AY.650.000533
ORF3a40S40LtCatTa11AY.690.000187
ORF3a40S40LtCatTa11AY.710.000475
ORF3a40S40LtCatTa11AY.80.000606
ORF3a40S40LtCatTa11AY.9.2.10.001976
ORF3a40S40LtCatTa11AZ.10.000867
ORF3a40S40LtCatTa11B.1.1.1280.007092
ORF3a40S40LtCatTa11B.1.1.1360.021277
ORF3a40S40LtCatTa11B.1.1.1410.002012
ORF3a40S40LtCatTa11B.1.1.1760.000439
ORF3a40S40LtCatTa11B.1.1.1920.002309
ORF3a40S40LtCatTa11B.1.1.2070.001182
ORF3a40S40LtCatTa11B.1.1.2140.000055
ORF3a40S40LtCatTa11B.1.1.2200.001859
ORF3a40S40LtCatTa11B.1.1.2220.000204
ORF3a40S40LtCatTa11B.1.1.2430.004082
ORF3a40S40LtCatTa11B.1.1.250.000569
ORF3a40S40LtCatTa11B.1.1.2550.00303
ORF3a40S40LtCatTa11B.1.1.2770.000759
ORF3a40S40LtCatTa11B.1.1.2800.003086
ORF3a40S40LtCatTa11B.1.1.2970.002237
ORF3a40S40LtCatTa11B.1.1.3010.001179
ORF3a40S40LtCatTa11B.1.1.3170.000412
ORF3a40S40LtCatTa11B.1.1.3690.000446
ORF3a40S40LtCatTa11B.1.1.390.00051
ORF3a40S40LtCatTa11B.1.1.4320.001266
ORF3a40S40LtCatTa11B.1.1.4350.034483
ORF3a40S40LtCatTa11B.1.1.4480.002033
ORF3a40S40LtCatTa11B.1.1.540.003021
ORF3a40S40LtCatTa11B.1.1.700.000341
ORF3a40S40LtCatTa11B.1.1110.001175
ORF3a40S40LtCatTa11B.1.1120.005181
ORF3a40S40LtCatTa11B.1.1470.000756
ORF3a40S40LtCatTa11B.1.1530.018868
ORF3a40S40LtCatTa11B.1.1580.02381
ORF3a40S40LtCatTa11B.1.160.100.008065
ORF3a40S40LtCatTa11B.1.160.280.002924
ORF3a40S40LtCatTa11B.1.160.80.001289
ORF3a40S40LtCatTa11B.1.177.100.000878
ORF3a40S40LtCatTa11B.1.177.120.000152
ORF3a40S40LtCatTa11B.1.177.160.000664
ORF3a40S40LtCatTa11B.1.177.40.000211
ORF3a40S40LtCatTa11B.1.177.430.001477
ORF3a40S40LtCatTa11B.1.177.540.000606
ORF3a40S40LtCatTa11B.1.177.60.000977
ORF3a40S40LtCatTa11B.1.177.600.000218
ORF3a40S40LtCatTa11B.1.177.730.000566
ORF3a40S40LtCatTa11B.1.177.780.009709
ORF3a40S40LtCatTa11B.1.177.870.000728
ORF3a40S40LtCatTa11B.1.2060.000816
ORF3a40S40LtCatTa11B.1.2390.001221
ORF3a40S40LtCatTa11B.1.2470.014925
ORF3a40S40LtCatTa11B.1.2650.001271
ORF3a40S40LtCatTa11B.1.2840.013158
ORF3a40S40LtCatTa11B.1.3010.005917
ORF3a40S40LtCatTa11B.1.3190.003049
ORF3a40S40LtCatTa11B.1.3400.004292
ORF3a40S40LtCatTa11B.1.3560.001727
ORF3a40S40LtCatTa11B.1.36.160.001425
ORF3a40S40LtCatTa11B.1.36.170.000494
ORF3a40S40LtCatTa11B.1.36.350.002604
ORF3a40S40LtCatTa11B.1.36.80.001
ORF3a40S40LtCatTa11B.1.3900.010638
ORF3a40S40LtCatTa11B.1.3960.000706
ORF3a40S40LtCatTa11B.1.4370.020833
ORF3a40S40LtCatTa11B.1.4450.011765
ORF3a40S40LtCatTa11B.1.4620.007246
ORF3a40S40LtCatTa11B.1.4970.000315
ORF3a40S40LtCatTa11B.1.5090.000866
ORF3a40S40LtCatTa11B.1.5240.001406
ORF3a40S40LtCatTa11B.1.5300.007143
ORF3a40S40LtCatTa11B.1.5380.008065
ORF3a40S40LtCatTa11B.1.5510.00129
ORF3a40S40LtCatTa11B.1.5610.000397
ORF3a40S40LtCatTa11B.1.5650.00081
ORF3a40S40LtCatTa11B.1.5750.000303
ORF3a40S40LtCatTa11B.1.5800.004065
ORF3a40S40LtCatTa11B.1.596.10.009346
ORF3a40S40LtCatTa11B.1.6030.010638
ORF3a40S40LtCatTa11B.1.6250.002353
ORF3a40S40LtCAtTG11B.1.6300.005236
ORF3a40S40LtCatTa11B.1.780.008547
ORF3a40S40LtCatTa11B.3.10.001658
ORF3a40S40LtCatTa11B.400.000364
ORF3a40S40LtCatTa11B.530.011765
ORF3a40S40LtCatTa11C.10.002392
ORF3a40S40LtCatTa11C.1.20.004255
ORF3a40S40LtCatTa11C.140.004329
ORF3a40S40LtCatTa11C.360.000911
ORF3a40S40LtCatTa11N.40.004255
ORF3a40S40LtCatTa11P.1.160.000374
ORF3a40S40LtCatTa11P.1.20.001156
ORF3a40S40LtCatTa11P.1.40.000977
ORF3a40S40LtCatTa11Q.40.000455
ORF3a40S40LtCatTa11W.10.008696
ORF3a40S40LtCatTa11W.40.001351