CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = S26L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a26S26LnonsyntCatTa275907627588770.99992825468-25470
ORF3a26S26LnonsynTCaCTa27590761490.000054003625468-25470
ORF3a26S26LnonsyntCAtTG2759076500.00001812225468-25470

Details of the mutation S26L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a26S26LtCatTa27588772759076All0.527668
ORF3a26S26LTCaCTa1492759076All0.000028
ORF3a26S26LtCAtTG502759076All0.00001
ORF3a26S26LtCatTa641614641646AY.40.998623
ORF3a26S26LtCAtTG25641646AY.40.000039
ORF3a26S26LTCaCTa7641646AY.40.000011
ORF3a26S26LtCatTa264722264763B.1.617.20.996788
ORF3a26S26LTCaCTa40264763B.1.617.20.000151
ORF3a26S26LtCAtTG1264763B.1.617.20.000004
ORF3a26S26LtCatTa224852224869AY.430.996199
ORF3a26S26LtCAtTG10224869AY.430.000044
ORF3a26S26LTCaCTa7224869AY.430.000031
ORF3a26S26LtCatTa165950165950AY.250.998159
ORF3a26S26LtCatTa163843163846AY.440.997273
ORF3a26S26LtCAtTG2163846AY.440.000012
ORF3a26S26LTCaCTa1163846AY.440.000006
ORF3a26S26LtCatTa160771160808AY.1030.998237
ORF3a26S26LTCaCTa33160808AY.1030.000205
ORF3a26S26LtCAtTG4160808AY.1030.000025
ORF3a26S26LtCatTa100368100369AY.30.998299
ORF3a26S26LTCaCTa1100369AY.30.00001
ORF3a26S26LtCatTa6336363364AY.290.999464
ORF3a26S26LtCAtTG163364AY.290.000016
ORF3a26S26LtCatTa4819448194AY.50.995168
ORF3a26S26LtCatTa4606746067AY.4.20.999132
ORF3a26S26LtCatTa4027240275AY.390.995181
ORF3a26S26LtCAtTG240275AY.390.000049
ORF3a26S26LTCaCTa140275AY.390.000025
ORF3a26S26LtCatTa3764437646AY.1020.998091
ORF3a26S26LTCaCTa237646AY.1020.000053
ORF3a26S26LtCatTa3524335244AY.260.997735
ORF3a26S26LTCaCTa135244AY.260.000028
ORF3a26S26LtCatTa3209832098AY.470.998414
ORF3a26S26LtCatTa2825128251AY.1190.997493
ORF3a26S26LtCatTa2713827138AY.9.20.996768
ORF3a26S26LtCatTa2685926860AY.1200.998587
ORF3a26S26LTCaCTa126860AY.1200.000037
ORF3a26S26LtCatTa2569425694AY.200.998601
ORF3a26S26LtCatTa2480524806AY.39.10.98261
ORF3a26S26LTCaCTa124806AY.39.10.00004
ORF3a26S26LtCatTa2476224762AY.420.996178
ORF3a26S26LtCatTa2426824268AY.60.998108
ORF3a26S26LtCatTa2170721708AY.1000.998666
ORF3a26S26LtCAtTG121708AY.1000.000046
ORF3a26S26LtCatTa2058220582AY.98.10.996804
ORF3a26S26LtCatTa1778917790AY.750.996583
ORF3a26S26LTCaCTa117790AY.750.000056
ORF3a26S26LtCatTa1593815938AY.1180.998496
ORF3a26S26LtCatTa1544915449AY.270.999871
ORF3a26S26LtCatTa1490314903AY.330.995192
ORF3a26S26LtCatTa1478114781AY.90.999121
ORF3a26S26LtCatTa1417814178AY.230.98891
ORF3a26S26LtCatTa1375913760AY.46.60.993501
ORF3a26S26LtCAtTG113760AY.46.60.000072
ORF3a26S26LtCatTa1261412614AY.980.996445
ORF3a26S26LtCatTa1190211902AY.9.10.996484
ORF3a26S26LtCatTa1180611806AY.1170.997803
ORF3a26S26LtCatTa1171611716AY.3.10.998892
ORF3a26S26LtCatTa1134611346AY.140.998592
ORF3a26S26LtCatTa1082610826AY.99.20.997696
ORF3a26S26LtCatTa1047410474AY.540.998665
ORF3a26S26LtCatTa1024310243AY.340.993212
ORF3a26S26LtCatTa95119511AY.610.996542
ORF3a26S26LtCatTa94929492AY.460.987927
ORF3a26S26LtCatTa92399239AY.4.50.99312
ORF3a26S26LtCatTa88678867AY.1100.999211
ORF3a26S26LtCatTa88658865AY.7.10.999098
ORF3a26S26LtCatTa86028635AY.740.994796
ORF3a26S26LTCaCTa338635AY.740.003816
ORF3a26S26LtCatTa79867987AY.450.971769
ORF3a26S26LTCaCTa17987AY.450.000122
ORF3a26S26LtCatTa76677669B.1.617.10.98878
ORF3a26S26LTCaCTa27669B.1.617.10.000258
ORF3a26S26LtCatTa73727372AY.1210.997564
ORF3a26S26LtCatTa70047014AY.1130.997295
ORF3a26S26LTCaCTa107014AY.1130.001424
ORF3a26S26LtCatTa67196719AY.360.99585
ORF3a26S26LtCatTa67086708AY.4.2.10.999404
ORF3a26S26LtCatTa61906190AY.130.996458
ORF3a26S26LtCatTa60346034AY.46.40.992597
ORF3a26S26LtCatTa54985498AY.75.10.991345
ORF3a26S26LtCatTa54455445AY.1110.997253
ORF3a26S26LtCatTa53555355AY.690.999627
ORF3a26S26LtCatTa50955095AY.70.998628
ORF3a26S26LtCatTa50395039AY.46.50.999802
ORF3a26S26LtCatTa47664766AY.700.993745
ORF3a26S26LtCatTa45354535AY.29.11
ORF3a26S26LtCatTa43204320AY.1140.998382
ORF3a26S26LtCatTa42844284AY.350.998369
ORF3a26S26LtCatTa36613661AY.930.999727
ORF3a26S26LtCatTa36293629AY.680.99343
ORF3a26S26LtCatTa35933593AY.5.40.994189
ORF3a26S26LtCatTa34693469AY.530.997412
ORF3a26S26LtCatTa34613461AY.1160.992544
ORF3a26S26LtCatTa34463446AY.920.989945
ORF3a26S26LtCatTa33923392AY.410.997061
ORF3a26S26LtCatTa32073207AY.116.10.998754
ORF3a26S26LtCatTa31583158AY.370.998104
ORF3a26S26LtCatTa31563156AY.120.997472
ORF3a26S26LtCatTa31133113AY.120.10.999358
ORF3a26S26LtCatTa29532954AY.5.30.996289
ORF3a26S26LTCaCTa12954AY.5.30.000337
ORF3a26S26LtCatTa28612861AY.1060.958138
ORF3a26S26LtCatTa27682768AY.20.985755
ORF3a26S26LtCatTa27592760B.10.025271
ORF3a26S26LtCAtTG12760B.10.000009
ORF3a26S26LtCatTa26192619AY.160.994305
ORF3a26S26LtCatTa25852585AY.631
ORF3a26S26LtCatTa25212521AY.300.997626
ORF3a26S26LtCatTa25202520AY.10.99723
ORF3a26S26LtCatTa24392439AY.4.40.997954
ORF3a26S26LtCatTa23962396AY.23.11
ORF3a26S26LtCatTa23352335AY.850.997437
ORF3a26S26LtCatTa22952295AY.240.989224
ORF3a26S26LtCatTa22802280AY.620.993464
ORF3a26S26LtCatTa22742275AY.840.994751
ORF3a26S26LTCaCTa12275AY.840.000437
ORF3a26S26LtCatTa22012201AY.940.974325
ORF3a26S26LtCatTa21452145AY.480.997674
ORF3a26S26LtCatTa21432143AY.1070.998602
ORF3a26S26LtCatTa21422142AY.670.994429
ORF3a26S26LtCatTa21082108AY.16.10.990602
ORF3a26S26LtCatTa21012101AY.710.9981
ORF3a26S26LtCatTa20302030AY.1010.995586
ORF3a26S26LtCatTa19991999AY.120.2.10.996014
ORF3a26S26LtCatTa19821982AY.380.989516
ORF3a26S26LtCatTa19261926AY.34.10.982152
ORF3a26S26LtCatTa18851885AY.100.99894
ORF3a26S26LtCatTa18761878AY.590.993644
ORF3a26S26LTCaCTa21878AY.590.001059
ORF3a26S26LtCatTa18731873AY.320.997338
ORF3a26S26LtCatTa18691869AY.650.996269
ORF3a26S26LtCatTa17881788AY.7.21
ORF3a26S26LtCatTa16781678AY.640.99881
ORF3a26S26LtCatTa16501650AY.81
ORF3a26S26LtCatTa15771577B.1.1.70.001412
ORF3a26S26LtCatTa15521552AY.1050.998071
ORF3a26S26LtCatTa15221524AY.570.998688
ORF3a26S26LtCAtTG11524AY.570.000656
ORF3a26S26LTCaCTa11524AY.570.000656
ORF3a26S26LtCatTa14991499AY.730.997339
ORF3a26S26LtCatTa14601460AY.900.999316
ORF3a26S26LtCatTa13791379AY.39.1.10.999275
ORF3a26S26LtCatTa13531353AY.4.10.997788
ORF3a26S26LtCatTa13331333AY.1090.985947
ORF3a26S26LtCatTa13191319AY.910.963477
ORF3a26S26LtCatTa13001302AY.950.989346
ORF3a26S26LTCaCTa21302AY.950.001522
ORF3a26S26LtCatTa12451245AY.500.995204
ORF3a26S26LtCatTa12211221AY.520.9943
ORF3a26S26LtCatTa12021202AY.860.99751
ORF3a26S26LtCatTa11971197AY.870.996669
ORF3a26S26LtCatTa11291129AY.46.20.717281
ORF3a26S26LtCatTa11281128AY.880.997347
ORF3a26S26LtCatTa11001100AY.580.998185
ORF3a26S26LtCatTa10991099AY.510.999091
ORF3a26S26LtCatTa10971097AY.4.30.923401
ORF3a26S26LtCatTa10841084AY.550.994495
ORF3a26S26LtCatTa10701070AY.46.30.999066
ORF3a26S26LtCatTa10571057AY.600.991557
ORF3a26S26LtCatTa10271027AY.400.990357
ORF3a26S26LtCatTa971971AY.46.10.99692
ORF3a26S26LtCatTa938938AY.990.98426
ORF3a26S26LtCatTa929929AY.660.993583
ORF3a26S26LtCatTa901901AY.1080.993385
ORF3a26S26LtCatTa884884AY.770.996618
ORF3a26S26LtCatTa884884AY.800.997743
ORF3a26S26LtCatTa870870AY.190.992018
ORF3a26S26LtCatTa820820AY.790.992736
ORF3a26S26LtCatTa757757AY.120.20.973008
ORF3a26S26LtCatTa745745AY.110.997323
ORF3a26S26LtCatTa733733AY.820.994573
ORF3a26S26LtCatTa732732AY.720.995918
ORF3a26S26LtCatTa649649AY.39.21
ORF3a26S26LtCatTa643643AY.780.990755
ORF3a26S26LtCatTa640640AY.99.10.993789
ORF3a26S26LtCatTa620620AY.560.995185
ORF3a26S26LtCatTa586586AY.970.996599
ORF3a26S26LtCatTa580580AY.831
ORF3a26S26LtCatTa527527AY.280.996219
ORF3a26S26LtCatTa506506AY.9.2.11
ORF3a26S26LtCatTa505505AY.210.958254
ORF3a26S26LtCatTa498498AY.810.992032
ORF3a26S26LtCatTa490490AY.1040.972222
ORF3a26S26LtCatTa464464AY.220.970711
ORF3a26S26LtCatTa463463AY.960.960581
ORF3a26S26LtCatTa450450AY.151
ORF3a26S26LtCatTa421421B0.053809
ORF3a26S26LtCatTa394394AY.5.20.970443
ORF3a26S26LtCatTa286286AY.490.913738
ORF3a26S26LtCatTa252252AY.5.10.947368
ORF3a26S26LtCatTa243243AY.91.10.987805
ORF3a26S26LtCatTa207207AY.761
ORF3a26S26LtCatTa202202P.10.003182
ORF3a26S26LtCatTa201201AY.890.985294
ORF3a26S26LtCatTa192192AY.1151
ORF3a26S26LtCatTa125125B.1.10.002268
ORF3a26S26LtCatTa122122AY.171
ORF3a26S26LtCatTa101101B.1.4290.002376
ORF3a26S26LtCatTa9999AY.181
ORF3a26S26LtCatTa9999B.1.20.000872
ORF3a26S26LtCatTa9999B.1.3510.002943
ORF3a26S26LtCatTa7979B.1.5960.006884
ORF3a26S26LtCatTa7575B.1.177.730.042469
ORF3a26S26LtCatTa6060B.1.5260.00141
ORF3a26S26LtCatTa5959B.1.1770.000777
ORF3a26S26LtCatTa5555P.1.140.002629
ORF3a26S26LtCatTa5454AY.311
ORF3a26S26LtCatTa3838B.1.1.2840.004081
ORF3a26S26LtCatTa3535B.1.1.4200.035211
ORF3a26S26LtCatTa3434B.1.2140.124542
ORF3a26S26LtCatTa3434B.1.5760.030825
ORF3a26S26LtCatTa3131B.1.160.140.065678
ORF3a26S26LtCatTa2828B.1.1.1530.030668
ORF3a26S26LtCatTa2626B.1.1.3740.061758
ORF3a26S26LtCatTa2626B.1.5750.007888
ORF3a26S26LtCatTa2626Q.80.004288
ORF3a26S26LtCatTa2424B.1.2210.001705
ORF3a26S26LtCatTa2222B.1.617.30.065672
ORF3a26S26LtCatTa2121P.1.70.006705
ORF3a26S26LtCatTa1919P.1.170.003073
ORF3a26S26LtCatTa1818B.1.6210.001593
ORF3a26S26LtCatTa1717B.1.2430.001183
ORF3a26S26LtCatTa1717C.370.001973
ORF3a26S26LtCatTa1616B.1.1.630.006173
ORF3a26S26LtCatTa1616B.1.6230.008584
ORF3a26S26LtCatTa1515B.1.1.3480.011943
ORF3a26S26LtCatTa1515B.1.1.5260.053191
ORF3a26S26LtCatTa1414A0.005418
ORF3a26S26LtCatTa1313B.1.1.5190.000516
ORF3a26S26LtCatTa1313B.1.1570.038806
ORF3a26S26LtCatTa1313B.1.177.860.002385
ORF3a26S26LtCatTa1212B.1.351.50.007194
ORF3a26S26LtCatTa1212P.1.150.002788
ORF3a26S26LtCatTa1010B.1.3350.103093
ORF3a26S26LtCatTa1010B.1.4620.072464
ORF3a26S26LtCatTa1010P.1.100.002695
ORF3a26S26LtCatTa99B.1.1.3170.003705
ORF3a26S26LtCatTa99B.1.1600.000281
ORF3a26S26LtCatTa99B.1.2320.004836
ORF3a26S26LtCatTa99B.1.5250.001018
ORF3a26S26LtCatTa88B.1.2580.000532
ORF3a26S26LtCatTa88P.1.120.003872
ORF3a26S26LtCatTa77B.1.1.3180.002112
ORF3a26S26LtCatTa77B.1.1.4340.00244
ORF3a26S26LtCatTa77B.1.177.320.009447
ORF3a26S26LtCatTa77B.1.360.001021
ORF3a26S26LtCatTa77B.1.3690.001997
ORF3a26S26LtCatTa77B.1.6370.000512
ORF3a26S26LtCatTa77P.20.001306
ORF3a26S26LtCatTa66B.1.1.5230.009375
ORF3a26S26LtCatTa66B.1.6040.103448
ORF3a26S26LtCatTa66B.1.6190.005226
ORF3a26S26LtCatTa66B.1.6280.002114
ORF3a26S26LtCatTa66D.20.00045
ORF3a26S26LtCatTa55B.1.1.2140.000277
ORF3a26S26LtCatTa55B.1.1.2190.025
ORF3a26S26LtCatTa55B.1.1.2940.006329
ORF3a26S26LtCatTa55B.1.177.210.000382
ORF3a26S26LtCatTa55B.1.177.830.007407
ORF3a26S26LtCatTa55B.1.3750.004098
ORF3a26S26LtCatTa55B.1.4390.029586
ORF3a26S26LtCatTa55B.1.5540.022026
ORF3a26S26LtCatTa55B.1.6090.002397
ORF3a26S26LtCatTa440.222222
ORF3a26S26LtCatTa44B.1.1.2160.003562
ORF3a26S26LtCatTa44B.1.1.530.054795
ORF3a26S26LtCatTa44B.1.1.750.042553
ORF3a26S26LtCatTa44B.1.2400.000862
ORF3a26S26LtCatTa44B.1.351.30.003506
ORF3a26S26LtCatTa44B.1.36.80.004
ORF3a26S26LtCatTa44B.1.4270.000202
ORF3a26S26LtCatTa44B.1.466.20.001565
ORF3a26S26LtCatTa44B.1.5820.001963
ORF3a26S26LtCatTa44B.1.6290.053333
ORF3a26S26LtCatTa44C.37.10.010471
ORF3a26S26LtCatTa44P.1.10.001271
ORF3a26S26LtCatTa44P.1.130.003594
ORF3a26S26LtCatTa44P.1.20.004624
ORF3a26S26LtCatTa44R.10.00036
ORF3a26S26LtCatTa33B.1.1.2220.000612
ORF3a26S26LtCatTa33B.1.1.2850.019608
ORF3a26S26LtCatTa33B.1.1.3060.001315
ORF3a26S26LtCatTa33B.1.177.350.002073
ORF3a26S26LtCatTa33B.1.258.170.000312
ORF3a26S26LtCatTa33B.1.36.180.001261
ORF3a26S26LtCatTa33B.1.36.310.005254
ORF3a26S26LtCatTa33B.1.4740.005703
ORF3a26S26LtCatTa33B.1.5300.021429
ORF3a26S26LtCatTa33B.1.5640.001278
ORF3a26S26LtCatTa33B.1.5770.002062
ORF3a26S26LtCatTa33B.1.6000.017544
ORF3a26S26LtCatTa33B.550.00885
ORF3a26S26LtCatTa33C.36.3.10.008152
ORF3a26S26LtCatTa22A.2.50.000998
ORF3a26S26LtCatTa22AD.20.000438
ORF3a26S26LtCatTa22AU.30.004219
ORF3a26S26LtCatTa22B.1.1.1210.004854
ORF3a26S26LtCatTa22B.1.1.1590.009346
ORF3a26S26LtCatTa22B.1.1.1980.002937
ORF3a26S26LtCatTa22B.1.1.280.000622
ORF3a26S26LtCatTa22B.1.1.2980.001724
ORF3a26S26LtCatTa22B.1.1.330.000842
ORF3a26S26LtCatTa22B.1.1.390.001019
ORF3a26S26LtCatTa22B.1.1.4240.090909
ORF3a26S26LtCatTa22B.1.1.4320.002532
ORF3a26S26LtCatTa22B.1.1.4620.017241
ORF3a26S26LtCatTa22B.1.1.700.000682
ORF3a26S26LtCatTa22B.1.1260.002551
ORF3a26S26LtCatTa22B.1.1430.042553
ORF3a26S26LtCatTa22B.1.1690.029851
ORF3a26S26LtCatTa22B.1.177.190.002861
ORF3a26S26LtCatTa22B.1.177.820.000955
ORF3a26S26LtCatTa22B.1.1950.01005
ORF3a26S26LtCatTa22B.1.2340.000264
ORF3a26S26LtCatTa22B.1.2410.001623
ORF3a26S26LtCatTa22B.1.2470.029851
ORF3a26S26LtCatTa22B.1.258.120.015748
ORF3a26S26LtCatTa22B.1.2600.006689
ORF3a26S26LtCatTa22B.1.3620.003082
ORF3a26S26LtCatTa22B.1.3970.009709
ORF3a26S26LtCatTa22B.1.4030.006536
ORF3a26S26LtCatTa22B.1.4330.00639
ORF3a26S26LtCatTa22B.1.4850.029851
ORF3a26S26LtCatTa22B.1.5510.002581
ORF3a26S26LtCatTa22B.1.564.10.003155
ORF3a26S26LtCatTa22B.1.5950.000522
ORF3a26S26LtCatTa22B.1.6200.001892
ORF3a26S26LtCatTa22B.1.810.042553
ORF3a26S26LtCatTa22B.4.50.02381
ORF3a26S26LtCatTa22N.100.058824
ORF3a26S26LtCatTa22Q.10.000253
ORF3a26S26LtCatTa11A.10.000282
ORF3a26S26LtCatTa11A.20.000662
ORF3a26S26LtCatTa11A.2.5.20.001572
ORF3a26S26LtCatTa11A.270.001656
ORF3a26S26LtCatTa11A.50.001923
ORF3a26S26LtCatTa11AD.10.004115
ORF3a26S26LtCatTa11AU.10.001266
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